CsaV3_4G031750 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G031750
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 22308025 .. 22309050 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGAAAAAAAAAAACGAAGCAAACAAAACAAAACAAAACACACACTCAAAACTCAAAAACTCCCCCGAAAGGACAAACAGAGAAACTCCCGCATGTTCAAACGGAGGGTTTTGGGAGATTTCAGAGGGTAAAATTCGTCGAGAATTAGGTAAAAAACTTTCAGATTTCTTTCGACGTATGCCTTTTAGATTTTCATTTCTTCTTTGTGTTTTCTTTGATCTGTGATTTCTTCCCTGTTTTTTTTTTTTTTTTTGGTTTTGATCTGACAGCATTTCAATGCCTACCCTGTTTCAAAAGTAGGGTTTTCCCTCTCTTCTTCTTTCATTTTTCATTTTTGGCTTTCGTGATCATTTGATTGTTTTCTTTTCTGGGTTTCTGTTTTTCGGTTGCTACTTGCTTCTTTGTTAGGAACAAATTGAGCGTAATTGAAGAAAGTTGAGATGCTTCTTCTTTTCTTTTTTCGTTTGTCAGTCCTAAGTAGCTAAAAGGTTCTCAATTTCGCTTTCTTTTTCTTCTTGTTTGTTGTTGAACTAAAGATACGAGGAAATCCTGGTGTAAAGGTGTTGAAGGATAATTTAATTGCAGAAGTTTTTGGTAAGAGAAATTTTCTAGTTGCGTTTTATCTAAAGGTTTGGCCTTGTTTTCTAAGTTGAAAGCTGGAAAGAGGGATTTAGAAGCTCTTCTTAAATGATTAGACAGAGTCAATTCAACCGAAAAACACTGATTTTCACTTGCATGTTGTGGGGAAGATTTTTCACATTATAGTTCATCTACACTCATTGGAGAATTGATATCATTTCTTCAAACTCGGTTTCTTCTATATTAGTTGTCTTGCATTGGTAGGTAAATAAATCAGCTATACTATTGGTGACTAGTCAATAGTACTTTTAAACTACTCTAATGGCTCTGTTCTCTCCCTCGCTCTGTCTTCTTTGCATCATGGTAATTGTTTATTGTGTTCTTCAGACTTCAAGCTATATAATTCGCACATCAACTACTGGAAGGGTATTTTTGGAGAATGA

mRNA sequence

AAAAAGAAAAAAAAAAACGAAGCAAACAAAACAAAACAAAACACACACTCAAAACTCAAAAACTCCCCCGAAAGGACAAACAGAGAAACTCCCGCATGTTCAAACGGAGGGTTTTGGGAGATTTCAGAGGGTAAAATTCGTCGAGAATTAGACTTCAAGCTATATAATTCGCACATCAACTACTGGAAGGGTATTTTTGGAGAATG

Coding sequence (CDS)

AAAAAGAAAAAAAAAAACGAAGCAAACAAAACAAAACAAAACACACACTCAAAACTCAAAAACTCCCCCGAAAGGACAAACAGAGAAACTCCCGCATGTTCAAACGGAGGGTTTTGGGAGATTTCAGAGGGTAAAATTCGTCGAGAATTAGACTTCAAGCTATATAATTCGCACATCAACTACTGGAAGGGTATTTTTGGAGAATG

Protein sequence

KKKKKNEANKTKQNTHSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHINYWKGIFGEX
BLAST of CsaV3_4G031750 vs. NCBI nr
Match: KGN54917.1 (hypothetical protein Csa_4G596000 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 16 HSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHINYWKGIFGE 69
          HSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHINYWKGIFGE
Sbjct: 17 HSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHINYWKGIFGE 69

BLAST of CsaV3_4G031750 vs. TrEMBL
Match: tr|A0A0A0L2T7|A0A0A0L2T7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G596000 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 16 HSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHINYWKGIFGE 69
          HSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHINYWKGIFGE
Sbjct: 17 HSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHINYWKGIFGE 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54917.11.8e-23100.00hypothetical protein Csa_4G596000 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L2T7|A0A0A0L2T7_CUCSA1.2e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G596000 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031750.1CsaV3_4G031750.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..25

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None