CsaV3_4G031550 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G031550
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 22023341 .. 22023633 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGG

mRNA sequence

ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGG

Coding sequence (CDS)

ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGG

Protein sequence

MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTX

Homology

[Close]

BLAST of CsaV3_4G031550 vs. NCBI nr
Match: KGN54894.1 (hypothetical protein Csa_4G575360 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60
          MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH
Sbjct: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60

Query: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT 98
          FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT
Sbjct: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT 97

[Close]

BLAST of CsaV3_4G031550 vs. NCBI nr
Match: KGN44006.1 (hypothetical protein Csa_7G098740 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 26 MKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGG 73
          MK LS+DA  LARRT ACTAAGL +TEK+KMVAE F FDRDSTDDGG
Sbjct: 1  MKKLSDDASTLARRTVACTAAGLCQTEKKKMVAERFSFDRDSTDDGG 47

[Close]

BLAST of CsaV3_4G031550 vs. NCBI nr
Match: KGN47280.1 (hypothetical protein Csa_6G280200 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 20 RDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVA 59
          R +RD MKGLS+DALALARRT  CTAAGLRR EKRKMVA
Sbjct: 10 RTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVA 48

[Close]

BLAST of CsaV3_4G031550 vs. TrEMBL
Match: tr|A0A0A0L1G4|A0A0A0L1G4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G575360 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.7e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60
          MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH
Sbjct: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60

Query: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT 98
          FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT
Sbjct: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT 97

[Close]

BLAST of CsaV3_4G031550 vs. TrEMBL
Match: tr|A0A0A0K8B4|A0A0A0K8B4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098740 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 26 MKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGG 73
          MK LS+DA  LARRT ACTAAGL +TEK+KMVAE F FDRDSTDDGG
Sbjct: 1  MKKLSDDASTLARRTVACTAAGLCQTEKKKMVAERFSFDRDSTDDGG 47

[Close]

BLAST of CsaV3_4G031550 vs. TrEMBL
Match: tr|A0A0A0KC31|A0A0A0KC31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G280200 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.6e-07
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 20 RDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVA 59
          R +RD MKGLS+DALALARRT  CTAAGLRR EKRKMVA
Sbjct: 10 RTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVA 48

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031550 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54894.1	1.2e-47	100.00	hypothetical protein Csa_4G575360 [Cucumis sativus]	[more]
KGN44006.1	4.3e-10	78.72	hypothetical protein Csa_7G098740 [Cucumis sativus]	[more]
KGN47280.1	1.3e-06	82.05	hypothetical protein Csa_6G280200 [Cucumis sativus]	[more]

BLAST of CsaV3_4G031550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1G4\|A0A0A0L1G4_CUCSA	7.7e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G575360 PE=4 SV=1	[more]
tr\|A0A0A0K8B4\|A0A0A0K8B4_CUCSA	2.9e-10	78.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098740 PE=4 SV=1	[more]
tr\|A0A0A0KC31\|A0A0A0KC31_CUCSA	8.6e-07	82.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G280200 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031550.1	CsaV3_4G031550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..98

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G031550	Silver-seed gourd	carcucB0314
CsaV3_4G031550	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G031550	Cucurbita maxima (Rimu)	cmacucB0799
CsaV3_4G031550	Cucurbita maxima (Rimu)	cmacucB1018
CsaV3_4G031550	Cucurbita moschata (Rifu)	cmocucB0782
CsaV3_4G031550	Cucurbita moschata (Rifu)	cmocucB1001
CsaV3_4G031550	Cucurbita pepo (Zucchini)	cpecucB0076
CsaV3_4G031550	Cucurbita pepo (Zucchini)	cpecucB0613
CsaV3_4G031550	Cucurbita pepo (Zucchini)	cpecucB0973
CsaV3_4G031550	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G031550	Bottle gourd (USVL1VR-Ls)	cuclsiB279
CsaV3_4G031550	Melon (DHL92) v3.5.1	cucmeB343
CsaV3_4G031550	Melon (DHL92) v3.6.1	cucmedB337
CsaV3_4G031550	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G031550	Watermelon (97103) v1	cucwmB348
CsaV3_4G031550	Watermelon (97103) v2	cucwmbB308
CsaV3_4G031550	Wax gourd	cucwgoB413