CsaV3_4G031240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionexopolygalacturonase-like
Locationchr4 : 21512337 .. 21513984 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTAAAAATCTTCTCAAGGGGATCGTACCAACAGCAAATGAGCAGTTCCTTCGTCCTGTAGAAGCACCCCGACGTCTTGGCTTCAGTACTCTTTCCAACAATGGCCGCACAGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGTTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAGGTGAGAAATATCAACACACCTAACTTCAAACCTTTTAATTTGAGTTAATTATCTTTAAATCGATGACTATAGGAAATTGTATATATTTTTTGCTATTAAATTCTACCGTCATATTATTCGAAACCGATATCAATTTTTCTTGTATTCTATTTGGGTGGAAATGGATGGTACAATTATTTCAACATTTTTTTGGCAAAAAGAGTTACAATTTGTTTTTATTTTCCATTTGGCAGGCATTCATGACAACGTGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCAAAGTTCTTAATCCCACAACGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCGAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCGTAACTATATATTTTTCCTTTCATTCTAAATTACAAGTGTTTTTACACTCTAAACGTTACGATTTGTGTCTAACACGTAGCTAAAATAACCTACAATAGACCAAATATGTTTAAAAATGAAAATTTATTTTAAATTACAAAAACTATGAAGATTATTTAGAAAATATATAGCAAAATTTCATGTATCCTATCGATAAGTATTTGAAATTTTACTTTAAATATTTTTTTATTTATTATGCTATATTCGAAAATGTCTTTTCAACCATAGTGAGTAATTCTTGGTTTTTTTTCTTTTTTTGGCAGTCGATTAAATTCACGAGATTAAATCACACGATTGTTGATGGGCTCACTTCGATAAATAGCATGGGGTTTCACACGTCTGTATTCTACTGCTACAATTTCACTGCTACTAACATGAAAATTATAGCTCCACATAATAGTCCCAACACCGATGGAATGCACCTTAGCACCTCAAAATTGGTCACCATTGCCAACAGTGTCATTGGCACCGGTGATGATTGTGTCTCCATTGGCCACAGTACTGAGAATATCACCGTCACCAACGTCACTTGCGGCCCTGGACATGGCCTTAGGTAAATAGTGCACTTTTTAAAAAAGAAATTAAAGATTAAGTAGACACAAAGGAAAACATCTGAAAGCTAATTTCCATTTTTCATCTTTTTCAGTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACTTGGGCTAG

mRNA sequence

ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTAAAAATCTTCTCAAGGGGATCGTACCAACAGCAAATGAGCAGTTCCTTCGTCCTGTAGAAGCACCCCGACGTCTTGGCTTCAGTACTCTTTCCAACAATGGCCGCACAGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGTTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAGGCATTCATGACAACGTGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCAAAGTTCTTAATCCCACAACGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCGAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACTTGGGCTAG

Coding sequence (CDS)

ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTAAAAATCTTCTCAAGGGGATCGTACCAACAGCAAATGAGCAGTTCCTTCGTCCTGTAGAAGCACCCCGACGTCTTGGCTTCAGTACTCTTTCCAACAATGGCCGCACAGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGTTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAGGCATTCATGACAACGTGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCAAAGTTCTTAATCCCACAACGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCGAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACTTGGGCTAG

Protein sequence

MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTLSNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQILPICGQLGQVLERKGCLRRSSKELHHFQCHQWCQNQDLG
Homology
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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: KGN44638.1 (hypothetical protein Csa_7G353000 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 8.0e-106
Identity = 188/206 (91.26%), Postives = 196/206 (95.15%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAV+F D+TGT+N LKGIVPT NEQFLRP EAPRRLGF+TL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
           SN G TVNDIKANVDLNENG S+FDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVW YNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: XP_011656188.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 185/206 (89.81%), Postives = 196/206 (95.15%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQI+LL FAWQ CAVIF+D+TGT+NLLKGIVPT N+QFLRP EAPR LGF+TL
Sbjct: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            + G TVNDI ANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKS+PITLEN+GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSLEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: KGN44961.1 (hypothetical protein Csa_7G398720 [Cucumis sativus])

HSP 1 Score: 387.5 bits (994), Expect = 3.3e-104
Identity = 187/206 (90.78%), Postives = 193/206 (93.69%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRN SLIQILLLVFA QCCAVIFDDVTGT+NLLKGIVP AN+QFLRP E+PR LGFSTL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            N G  VNDIKANVDLNENGGSVFDVTKHGAK DG+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: KGN50738.1 (hypothetical protein Csa_5G222970 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 157/173 (90.75%), Postives = 164/173 (94.80%), Query Frame = 0 

Query: 34  LKGIVPTANEQFLRPVEAPRRLGFSTLSNNGRTVNDIKANVDLNENGGSVFDVTKHGAKA 93
           L GIVPT N+QFLRP EAPR LGF+TL + G TVNDI ANVDLNENGGSVFDVTKHGAKA
Sbjct: 6   LYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 65

Query: 94  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKA 153
           DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQ TFLVGPVTFAGPCKS+PITLEN+GTVKA
Sbjct: 66  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 125

Query: 154 TTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQILPI 207
           TTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 126 TTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of CsaV3_4G031240 vs. NCBI nr
Match: KGN44960.1 (hypothetical protein Csa_7G398220 [Cucumis sativus])

HSP 1 Score: 317.8 bits (813), Expect = 3.3e-83
Identity = 161/192 (83.85%), Postives = 167/192 (86.98%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCC---AVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGF 60
           MTRN SLIQILLLVFAW+CC   A IF D   T+ LL GIVP  NEQFLRP EAP  LGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLSN-NGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVG 120
           STL N  G TVNDIK NVDLNENGG VFDVTKHGAKADG+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLS 189
           TGSGVFDGQG+S
Sbjct: 181 TGSGVFDGQGVS 192

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BLAST of CsaV3_4G031240 vs. TAIR10
Match: AT1G02790.1 (polygalacturonase 4)

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-28
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 0 

Query: 77  NENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAG 136
           N    +V+D+TK GA  DG T+  +AF+ TWI  C + V PA  L+P+ TFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQILPICGQLGQV--LERKGCLRRSSKELHHF 231
           K   C + P   +   +  +E  G    ++K  H F
Sbjct: 165 KKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMF 196

[Close]
BLAST of CsaV3_4G031240 vs. TAIR10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 0 

Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+ TF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLC 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNC 147

[Close]
BLAST of CsaV3_4G031240 vs. TAIR10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 0 

Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+ TF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLC 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNC 147

[Close]
BLAST of CsaV3_4G031240 vs. TAIR10
Match: AT2G26620.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 0 

Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFP 142
           VF+V +HG+K DGKTD+  AF + W  AC+   G +K  +P+ TF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + +      W +   I    ++GSG  DGQG   WP NDC KN  C 
Sbjct: 90  IEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 203 ILPI 207
            L I
Sbjct: 150 KLAI 152

[Close]
BLAST of CsaV3_4G031240 vs. TAIR10
Match: AT2G15470.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-23
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+ TF +G V F G CK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGLCKN-P 89

Query: 143 ITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLC 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNC 147

[Close]
BLAST of CsaV3_4G031240 vs. Swiss-Prot
Match: sp|P49062|PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-27
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 0 

Query: 77  NENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAG 136
           N    +V+D+TK GA  DG T+  +AF+ TWI  C + V PA  L+P+ TFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQILPICGQLGQV--LERKGCLRRSSKELHHF 231
           K   C + P   +   +  +E  G    ++K  H F
Sbjct: 165 KKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMF 196

[Close]
BLAST of CsaV3_4G031240 vs. Swiss-Prot
Match: sp|P35339|PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-24
Identity = 60/139 (43.17%), Postives = 77/139 (55.40%), Query Frame = 0 

Query: 68  NDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTF 127
           ND KA+       G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+  F
Sbjct: 30  NDAKAS-----GPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDF 89

Query: 128 LVGPVTFAGPCKSFPITLENRGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQG 187
           LVGP+ F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG
Sbjct: 90  LVGPLNFTGPCKG-DVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQG 149

Query: 188 LSVWPYNDCKKNNLCQILP 206
            +VW  N C K   C+ILP
Sbjct: 150 PAVWSKNSCVKKYDCKILP 161

[Close]
BLAST of CsaV3_4G031240 vs. Swiss-Prot
Match: sp|P26216|PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.5e-23
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 0 

Query: 74  VDLNENG-GSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPV 133
           +D   +G G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+  FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 134 TFAGPCKSFPITLENRGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWP 193
            F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW 
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 194 YNDCKKNNLCQILP 206
            N C K   C+ILP
Sbjct: 150 KNSCTKKYDCKILP 161

[Close]
BLAST of CsaV3_4G031240 vs. Swiss-Prot
Match: sp|P35338|PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.5e-23
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 0 

Query: 74  VDLNENG-GSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPV 133
           +D   +G G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+  FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 134 TFAGPCKSFPITLENRGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWP 193
            F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW 
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 194 YNDCKKNNLCQILP 206
            N C K   C+ILP
Sbjct: 150 KNSCTKKYDCKILP 161

[Close]
BLAST of CsaV3_4G031240 vs. Swiss-Prot
Match: sp|Q6H9K0|PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.6e-20
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0 

Query: 78  ENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGP 137
           ++ GSVF+V  +GAK  G  D +QA M  W AAC +  GP+  LIP+  + +G V   GP
Sbjct: 4   QSSGSVFNVNDYGAKGAG--DISQAVMKAWKAACASQ-GPSTVLIPKGNYNMGEVAMQGP 63

Query: 138 CKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKK 197
           CK   I  +  G VKA  D S + S  W S   I G  ++G+G  DGQG + W  N+C K
Sbjct: 64  CKGSKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDK 123

Query: 198 NNLCQ 203
           N  C+
Sbjct: 124 NPNCK 125

[Close]
BLAST of CsaV3_4G031240 vs. TrEMBL
Match: tr|A0A0A0K588|A0A0A0K588_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 5.3e-106
Identity = 188/206 (91.26%), Postives = 196/206 (95.15%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAV+F D+TGT+N LKGIVPT NEQFLRP EAPRRLGF+TL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
           SN G TVNDIKANVDLNENG S+FDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVW YNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPI 206

[Close]
BLAST of CsaV3_4G031240 vs. TrEMBL
Match: tr|A0A0A0KAZ2|A0A0A0KAZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 2.2e-104
Identity = 187/206 (90.78%), Postives = 193/206 (93.69%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRN SLIQILLLVFA QCCAVIFDDVTGT+NLLKGIVP AN+QFLRP E+PR LGFSTL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            N G  VNDIKANVDLNENGGSVFDVTKHGAK DG+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

[Close]
BLAST of CsaV3_4G031240 vs. TrEMBL
Match: tr|A0A0A0KMA6|A0A0A0KMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.4e-87
Identity = 157/173 (90.75%), Postives = 164/173 (94.80%), Query Frame = 0 

Query: 34  LKGIVPTANEQFLRPVEAPRRLGFSTLSNNGRTVNDIKANVDLNENGGSVFDVTKHGAKA 93
           L GIVPT N+QFLRP EAPR LGF+TL + G TVNDI ANVDLNENGGSVFDVTKHGAKA
Sbjct: 6   LYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 65

Query: 94  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKA 153
           DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQ TFLVGPVTFAGPCKS+PITLEN+GTVKA
Sbjct: 66  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 125

Query: 154 TTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQILPI 207
           TTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 126 TTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of CsaV3_4G031240 vs. TrEMBL
Match: tr|A0A0A0K5I2|A0A0A0K5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398220 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.2e-83
Identity = 161/192 (83.85%), Postives = 167/192 (86.98%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCC---AVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGF 60
           MTRN SLIQILLLVFAW+CC   A IF D   T+ LL GIVP  NEQFLRP EAP  LGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLSN-NGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVG 120
           STL N  G TVNDIK NVDLNENGG VFDVTKHGAKADG+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLS 189
           TGSGVFDGQG+S
Sbjct: 181 TGSGVFDGQGVS 192

[Close]
BLAST of CsaV3_4G031240 vs. TrEMBL
Match: tr|A0A1S3BRD3|A0A1S3BRD3_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103492867 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.4e-79
Identity = 153/240 (63.75%), Postives = 175/240 (72.92%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           +TR++ L QILL VFAWQCC  +        NL   IV T N+Q   PV AP  LG  TL
Sbjct: 3   ITRDIGLFQILLWVFAWQCCDKVSAITNDIANLNYEIVSTINQQLPSPVAAPGPLGIETL 62

Query: 61  SNNGRTVN-DIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAK 120
            +    VN DI  N DLN NGGSVF VTKHGAKADGKTDDAQAF+TTWI ACRNTVGPAK
Sbjct: 63  PDLDNMVNDDINTNNDLNGNGGSVFHVTKHGAKADGKTDDAQAFVTTWIEACRNTVGPAK 122

Query: 121 FLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGS 180
            LIP+ T+LVGPVT AGPCKSFPITLEN+GTVKATTDIS YSSPEWFSIEDITGFILTGS
Sbjct: 123 ILIPEGTYLVGPVTLAGPCKSFPITLENQGTVKATTDISQYSSPEWFSIEDITGFILTGS 182

Query: 181 GVFDGQGLSVWPYNDCKKNNLCQILPICGQLGQ----VLERKGCLRRSSKELHHFQCHQW 236
           GVFDGQG++ WPYNDCK NN+CQ+LPI  +  +    +++R   L      +  F C+ +
Sbjct: 183 GVFDGQGVAAWPYNDCKNNNICQLLPISIKFSRLNDTIVDRLTSLNSKGFHMSLFSCYNF 242

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44638.18.0e-10691.26hypothetical protein Csa_7G353000 [Cucumis sativus][more]
XP_011656188.11.5e-10489.81PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
KGN44961.13.3e-10490.78hypothetical protein Csa_7G398720 [Cucumis sativus][more]
KGN50738.12.2e-8790.75hypothetical protein Csa_5G222970 [Cucumis sativus][more]
KGN44960.13.3e-8383.85hypothetical protein Csa_7G398220 [Cucumis sativus][more]
BLAST of CsaV3_4G031240 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02790.12.1e-2841.67polygalacturonase 4[more]
AT2G15460.11.4e-2443.70Pectin lyase-like superfamily protein[more]
AT2G15450.11.4e-2443.70Pectin lyase-like superfamily protein[more]
AT2G26620.12.4e-2441.94Pectin lyase-like superfamily protein[more]
AT2G15470.12.1e-2342.86Pectin lyase-like superfamily protein[more]
BLAST of CsaV3_4G031240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49062|PGLR1_ARATH3.8e-2741.67Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ... [more]
sp|P35339|PGLR3_MAIZE4.0e-2443.17Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1[more]
sp|P26216|PGLR1_MAIZE7.5e-2342.54Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1[more]
sp|P35338|PGLR2_MAIZE7.5e-2342.54Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1[more]
sp|Q6H9K0|PGLR2_PLAAC4.6e-2041.60Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S... [more]
BLAST of CsaV3_4G031240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K588|A0A0A0K588_CUCSA5.3e-10691.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1[more]
tr|A0A0A0KAZ2|A0A0A0KAZ2_CUCSA2.2e-10490.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1[more]
tr|A0A0A0KMA6|A0A0A0KMA6_CUCSA1.4e-8790.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1[more]
tr|A0A0A0K5I2|A0A0A0K5I2_CUCSA2.2e-8383.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398220 PE=3 SV=1[more]
tr|A0A1S3BRD3|A0A1S3BRD3_CUCME1.4e-7963.75exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103492867 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031240.1CsaV3_4G031240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 115..207
e-value: 2.9E-13
score: 49.5
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 61..229
e-value: 4.8E-26
score: 93.4
NoneNo IPR availablePANTHERPTHR31375:SF17EXOPOLYGALACTURONASE CLONE GBGE184coord: 65..210
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 65..210
IPR011050Pectin lyase fold/virulence factorSUPERFAMILYSSF51126Pectin lyase-likecoord: 82..199

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G031240CSPI04G20780Wild cucumber (PI 183967)cpicucB212
CsaV3_4G031240Cucsa.357430Cucumber (Gy14) v1cgycucB543
CsaV3_4G031240CsGy4G019510Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G031240Silver-seed gourdcarcucB0314
CsaV3_4G031240Silver-seed gourdcarcucB0898
CsaV3_4G031240Cucurbita maxima (Rimu)cmacucB0799
CsaV3_4G031240Cucurbita maxima (Rimu)cmacucB1018
CsaV3_4G031240Cucurbita moschata (Rifu)cmocucB0782
CsaV3_4G031240Cucurbita moschata (Rifu)cmocucB1001
CsaV3_4G031240Cucurbita pepo (Zucchini)cpecucB0076
CsaV3_4G031240Cucurbita pepo (Zucchini)cpecucB0613
CsaV3_4G031240Bottle gourd (USVL1VR-Ls)cuclsiB279
CsaV3_4G031240Melon (DHL92) v3.5.1cucmeB336
CsaV3_4G031240Melon (DHL92) v3.6.1cucmedB329
CsaV3_4G031240Watermelon (Charleston Gray)cucwcgB319
CsaV3_4G031240Watermelon (97103) v1cucwmB348
CsaV3_4G031240Watermelon (97103) v2cucwmbB308
CsaV3_4G031240Wax gourdcucwgoB402
CsaV3_4G031240Wax gourdcucwgoB413