CsaV3_4G031090 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G031090
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 21254647 .. 21255026 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGATGGAGATGGCTTGAACACGGGAGCATCGACTCACTTCAAGGAGGAGGTTAGCTTGGATGGGACACGTGGCTCGGCTTCGCGAGGAGGGGTAGATCAGATTTCTTGCACGCATGTGACTCAGAGGAAGATCGACTACAGGTTGAGCTTCAGTAGTCGGCAGACGGAGGAACGTCGGCTAGAACACTTTCGGCTTGCGAAGGAACGTTCGGGATGCGCAGCTTGTGATGGAAACGACTTTGATCTACAATGCATGGTGGAGACTTGTGACAGAGAAGAGGATGCGACGAAGACGAAGCTTCAAAATCGTTCGACCTTTGACGCGAAGTGGACAACTTCGTTTGAGCGTGGACTGAGCAGCTGCAGTCGTCGATGGTAG

mRNA sequence

GATGGAGATGGCTTGAACACGGGAGCATCGACTCACTTCAAGGAGGAGGTTAGCTTGGATGGGACACGTGGCTCGGCTTCGCGAGGAGGGGTAGATCAGATTTCTTGCACGCATGTGACTCAGAGGAAGATCGACTACAGGTTGAGCTTCAGTAGTCGGCAGACGGAGGAACGTCGGCTAGAACACTTTCGGCTTGCGAAGGAACGTTCGGGATGCGCAGCTTGTGATGGAAACGACTTTGATCTACAATGCATGGTGGAGACTTGTGACAGAGAAGAGGATGCGACGAAGACGAAGCTTCAAAATCGTTCGACCTTTGACGCGAAGTGGACAACTTCGTTTGAGCGTGGACTGAGCAGCTGCAGTCGTCGATGGTAG

Coding sequence (CDS)

GATGGAGATGGCTTGAACACGGGAGCATCGACTCACTTCAAGGAGGAGGTTAGCTTGGATGGGACACGTGGCTCGGCTTCGCGAGGAGGGGTAGATCAGATTTCTTGCACGCATGTGACTCAGAGGAAGATCGACTACAGGTTGAGCTTCAGTAGTCGGCAGACGGAGGAACGTCGGCTAGAACACTTTCGGCTTGCGAAGGAACGTTCGGGATGCGCAGCTTGTGATGGAAACGACTTTGATCTACAATGCATGGTGGAGACTTGTGACAGAGAAGAGGATGCGACGAAGACGAAGCTTCAAAATCGTTCGACCTTTGACGCGAAGTGGACAACTTCGTTTGAGCGTGGACTGAGCAGCTGCAGTCGTCGATGGTAG

Protein sequence

DGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERRLEHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLSSCSRRW

Homology

[Close]

BLAST of CsaV3_4G031090 vs. NCBI nr
Match: KGN54849.1 (hypothetical protein Csa_4G541630 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 4.6e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   DGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERRL 60
           DGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERRL
Sbjct: 2   DGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERRL 61

Query: 61  EHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLSS 120
           EHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLSS
Sbjct: 62  EHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLSS 121

Query: 121 CSRRW 126
           CSRRW
Sbjct: 122 CSRRW 126

[Close]

BLAST of CsaV3_4G031090 vs. TrEMBL
Match: tr|A0A0A0L1B4|A0A0A0L1B4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G541630 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.1e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   DGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERRL 60
           DGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERRL
Sbjct: 2   DGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERRL 61

Query: 61  EHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLSS 120
           EHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLSS
Sbjct: 62  EHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLSS 121

Query: 121 CSRRW 126
           CSRRW
Sbjct: 122 CSRRW 126

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031090 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54849.1	4.6e-65	100.00	hypothetical protein Csa_4G541630 [Cucumis sativus]	[more]

BLAST of CsaV3_4G031090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1B4\|A0A0A0L1B4_CUCSA	3.1e-65	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G541630 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031090.1	CsaV3_4G031090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G031090	CsGy4G019400	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G031090	Wax gourd	cucwgoB403
CsaV3_4G031090	Wax gourd	cucwgoB414
CsaV3_4G031090	Silver-seed gourd	carcucB0314
CsaV3_4G031090	Silver-seed gourd	carcucB0898
CsaV3_4G031090	Cucumber (Gy14) v1	cgycucB543
CsaV3_4G031090	Cucurbita maxima (Rimu)	cmacucB0799
CsaV3_4G031090	Cucurbita maxima (Rimu)	cmacucB1018
CsaV3_4G031090	Cucurbita moschata (Rifu)	cmocucB0782
CsaV3_4G031090	Cucurbita moschata (Rifu)	cmocucB1001
CsaV3_4G031090	Cucurbita pepo (Zucchini)	cpecucB0076
CsaV3_4G031090	Cucurbita pepo (Zucchini)	cpecucB0613
CsaV3_4G031090	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G031090	Bottle gourd (USVL1VR-Ls)	cuclsiB279
CsaV3_4G031090	Melon (DHL92) v3.5.1	cucmeB336
CsaV3_4G031090	Melon (DHL92) v3.6.1	cucmedB329
CsaV3_4G031090	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G031090	Watermelon (97103) v1	cucwmB357
CsaV3_4G031090	Watermelon (97103) v2	cucwmbB306
CsaV3_4G031090	Watermelon (97103) v2	cucwmbB308