CsaV3_4G031050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 21220012 .. 21220382 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCCCAACGTATTCCGATTCATCATAATTTCCTTAATAAGACCATACCCAGCCCTAATTTCAGTAAATGTTTCAAACTACCAGCATCCTGCGTCGGTACTAACCTCTCGCTTGCCTCCGTAGTCAGCTCTCGTACGCCTGCTGATGTTTTTCCCCTCTCCTCTTAAAATTCGTAAGATTGAAATTTTATTATCTTTCAATTTTTCATTTCTTCAAGTTCATGGCTTGTGCCAGTTTGATTTTGGATTGATGTTGGGAAGTGTGTTAAGAGATGGAAGAAGAGGAGACGATTGATATTGGCCGCGTGGCGTTGGAGATCAAAGAGATGGAAGAAGAGGGGACGAAAGAGGAGATGCGAGATGAGTAA

mRNA sequence

ATGAAACCCCAACGTATTCCGATTCATCATAATTTCCTTAATAAGACCATACCCAGCCCTAATTTCAGTAAATGTTTCAAACTACCAGCATCCTGCGTCGGTACTAACCTCTCGCTTGCCTCCGTAGTCAGCTCTCGTACGCCTGCTGATTTTGATTTTGGATTGATGTTGGGAAGTGTGTTAAGAGATGGAAGAAGAGGAGACGATTGA

Coding sequence (CDS)

ATGAAACCCCAACGTATTCCGATTCATCATAATTTCCTTAATAAGACCATACCCAGCCCTAATTTCAGTAAATGTTTCAAACTACCAGCATCCTGCGTCGGTACTAACCTCTCGCTTGCCTCCGTAGTCAGCTCTCGTACGCCTGCTGATTTTGATTTTGGATTGATGTTGGGAAGTGTGTTAAGAGATGGAAGAAGAGGAGACGATTGA

Protein sequence

MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSVLRDGRRGDD
Homology
[Close]
BLAST of CsaV3_4G031050 vs. NCBI nr
Match: KGN54846.1 (hypothetical protein Csa_4G539620 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 8.3e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSV 60
          MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSV
Sbjct: 1  MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSV 60

Query: 61 LRDGRRGDD 70
          LRDGRRGDD
Sbjct: 61 LRDGRRGDD 69

[Close]
BLAST of CsaV3_4G031050 vs. TrEMBL
Match: tr|A0A0A0L3Y6|A0A0A0L3Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539620 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.5e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSV 60
          MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSV
Sbjct: 1  MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSV 60

Query: 61 LRDGRRGDD 70
          LRDGRRGDD
Sbjct: 61 LRDGRRGDD 69

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54846.18.3e-32100.00hypothetical protein Csa_4G539620 [Cucumis sativus][more]
BLAST of CsaV3_4G031050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3Y6|A0A0A0L3Y6_CUCSA5.5e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031050.1CsaV3_4G031050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G031050Watermelon (97103) v2cucwmbB306
CsaV3_4G031050Watermelon (97103) v2cucwmbB308
CsaV3_4G031050Wax gourdcucwgoB403
CsaV3_4G031050Wax gourdcucwgoB414
CsaV3_4G031050Silver-seed gourdcarcucB0314
CsaV3_4G031050Silver-seed gourdcarcucB0898
CsaV3_4G031050Cucumber (Gy14) v2cgybcucB171
CsaV3_4G031050Cucumber (Gy14) v1cgycucB543
CsaV3_4G031050Cucurbita maxima (Rimu)cmacucB0799
CsaV3_4G031050Cucurbita maxima (Rimu)cmacucB1018
CsaV3_4G031050Cucurbita moschata (Rifu)cmocucB0782
CsaV3_4G031050Cucurbita moschata (Rifu)cmocucB1001
CsaV3_4G031050Cucurbita pepo (Zucchini)cpecucB0076
CsaV3_4G031050Cucurbita pepo (Zucchini)cpecucB0613
CsaV3_4G031050Wild cucumber (PI 183967)cpicucB212
CsaV3_4G031050Wild cucumber (PI 183967)cpicucB222
CsaV3_4G031050Bottle gourd (USVL1VR-Ls)cuclsiB279
CsaV3_4G031050Melon (DHL92) v3.5.1cucmeB336
CsaV3_4G031050Melon (DHL92) v3.6.1cucmedB329
CsaV3_4G031050Watermelon (Charleston Gray)cucwcgB319
CsaV3_4G031050Watermelon (97103) v1cucwmB357