CsaV3_4G031020 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031020
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 21216196 .. 21216372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCAACGAAGAAGGAAGAAAGAAAGAGGAAAATGGGGTTTGTGAGATAGATGATTGGAAAAGTGGGAAGAAGAAGGGAAAAGTGAGTATTGTGTTAGGTGGGGCGGATTTGAAACGTGAGTCGCCATTAGTCGTGAGGTCTGAAAGAGAAGGGGTTGAGTATGAAGCGTGA

mRNA sequence

ATGCAAAGCAACGAAGAAGGAAGAAAGAAAGAGGAAAATGGGGTTTGTGAGATAGATGATTGGAAAAGTGGGAAGAAGAAGGGAAAAGTGAGTATTGTGTTAGGTGGGGCGGATTTGAAACGTGAGTCGCCATTAGTCGTGAGGTCTGAAAGAGAAGGGGTTGAGTATGAAGCGTGA

Coding sequence (CDS)

ATGCAAAGCAACGAAGAAGGAAGAAAGAAAGAGGAAAATGGGGTTTGTGAGATAGATGATTGGAAAAGTGGGAAGAAGAAGGGAAAAGTGAGTATTGTGTTAGGTGGGGCGGATTTGAAACGTGAGTCGCCATTAGTCGTGAGGTCTGAAAGAGAAGGGGTTGAGTATGAAGCGTGA

Protein sequence

MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVVRSEREGVEYEA
Homology
[Close]
BLAST of CsaV3_4G031020 vs. NCBI nr
Match: KGN54843.1 (hypothetical protein Csa_4G539590 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVVRSEREGVEYE 58
          MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLV+RSEREGVEYE
Sbjct: 1  MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYE 57

[Close]
BLAST of CsaV3_4G031020 vs. NCBI nr
Match: KGN54589.1 (hypothetical protein Csa_4G372600 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 8.6e-06
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 1  MQSNEEGRKKEENGVCEIDDWKSG-------KKKGKVSIVLGGADLKRESPLVVRSERE 53
          MQ +EEGRKKEEN V E DDWKSG       KKKGKV IVLGG + +RE   V+R +RE
Sbjct: 1  MQRDEEGRKKEENEVRETDDWKSGKKKEKPLKKKGKVRIVLGGMNSERECD-VLRMQRE 58

[Close]
BLAST of CsaV3_4G031020 vs. TrEMBL
Match: tr|A0A0A0KZC0|A0A0A0KZC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539590 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVVRSEREGVEYE 58
          MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLV+RSEREGVEYE
Sbjct: 1  MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYE 57

[Close]
BLAST of CsaV3_4G031020 vs. TrEMBL
Match: tr|A0A0A0L0M0|A0A0A0L0M0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G372600 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-06
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 1  MQSNEEGRKKEENGVCEIDDWKSG-------KKKGKVSIVLGGADLKRESPLVVRSERE 53
          MQ +EEGRKKEEN V E DDWKSG       KKKGKV IVLGG + +RE   V+R +RE
Sbjct: 1  MQRDEEGRKKEENEVRETDDWKSGKKKEKPLKKKGKVRIVLGGMNSERECD-VLRMQRE 58

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54843.13.0e-2298.25hypothetical protein Csa_4G539590 [Cucumis sativus][more]
KGN54589.18.6e-0661.02hypothetical protein Csa_4G372600 [Cucumis sativus][more]
BLAST of CsaV3_4G031020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031020 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZC0|A0A0A0KZC0_CUCSA2.0e-2298.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539590 PE=4 SV=1[more]
tr|A0A0A0L0M0|A0A0A0L0M0_CUCSA5.7e-0661.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G372600 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031020.1CsaV3_4G031020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G031020CSPI04G20590Wild cucumber (PI 183967)cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G031020Wax gourdcucwgoB403
CsaV3_4G031020Wax gourdcucwgoB414
CsaV3_4G031020Silver-seed gourdcarcucB0314
CsaV3_4G031020Silver-seed gourdcarcucB0898
CsaV3_4G031020Cucumber (Gy14) v2cgybcucB171
CsaV3_4G031020Cucumber (Gy14) v1cgycucB543
CsaV3_4G031020Cucurbita maxima (Rimu)cmacucB0799
CsaV3_4G031020Cucurbita maxima (Rimu)cmacucB1018
CsaV3_4G031020Cucurbita moschata (Rifu)cmocucB0782
CsaV3_4G031020Cucurbita moschata (Rifu)cmocucB1001
CsaV3_4G031020Cucurbita pepo (Zucchini)cpecucB0076
CsaV3_4G031020Cucurbita pepo (Zucchini)cpecucB0613
CsaV3_4G031020Wild cucumber (PI 183967)cpicucB222
CsaV3_4G031020Bottle gourd (USVL1VR-Ls)cuclsiB279
CsaV3_4G031020Melon (DHL92) v3.5.1cucmeB336
CsaV3_4G031020Melon (DHL92) v3.6.1cucmedB329
CsaV3_4G031020Watermelon (Charleston Gray)cucwcgB319
CsaV3_4G031020Watermelon (97103) v1cucwmB357
CsaV3_4G031020Watermelon (97103) v2cucwmbB308