CsaV3_4G030860 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G030860
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 20898464 .. 20898703 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCATCTCGTATGTGAAGTGCGCCGAAAGCCTGCAGAGGAAAACTTAGTGCTAGCCTGCATTCAACTTCATATCCACAATCGCATCAACACTGACTACCCTTTAGATCTCAGATATTTTGGCCAATCTTCTCCCACATATTCCAATGCCATTGTGTCTAAGGTCAAATCTCCACATTTCATAAGCTTTGAAGTTCCCTTCAAATTTGGGAGCTTCAAGCTATTGTGGCAGAAGTGA

mRNA sequence

ATGTTTCATCTCGTATGTGAAGTGCGCCGAAAGCCTGCAGAGGAAAACTTAGTGCTAGCCTGCATTCAACTTCATATCCACAATCGCATCAACACTGACTACCCTTTAGATCTCAGATATTTTGGCCAATCTTCTCCCACATATTCCAATGCCATTGTGTCTAAGGTCAAATCTCCACATTTCATAAGCTTTGAAGTTCCCTTCAAATTTGGGAGCTTCAAGCTATTGTGGCAGAAGTGA

Coding sequence (CDS)

ATGTTTCATCTCGTATGTGAAGTGCGCCGAAAGCCTGCAGAGGAAAACTTAGTGCTAGCCTGCATTCAACTTCATATCCACAATCGCATCAACACTGACTACCCTTTAGATCTCAGATATTTTGGCCAATCTTCTCCCACATATTCCAATGCCATTGTGTCTAAGGTCAAATCTCCACATTTCATAAGCTTTGAAGTTCCCTTCAAATTTGGGAGCTTCAAGCTATTGTGGCAGAAGTGA

Protein sequence

MFHLVCEVRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPHFISFEVPFKFGSFKLLWQK

Homology

[Close]

BLAST of CsaV3_4G030860 vs. NCBI nr
Match: KGN54774.1 (hypothetical protein Csa_4G492190 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 6.2e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MFHLVCEVRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPH 60
          MFHLVCEVRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPH
Sbjct: 1  MFHLVCEVRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPH 60

Query: 61 FISFEVPFKFGSFKLLWQK 80
          FISFEVPFKFGSFKLLWQK
Sbjct: 61 FISFEVPFKFGSFKLLWQK 79

[Close]

BLAST of CsaV3_4G030860 vs. TrEMBL
Match: tr|A0A0A0L142|A0A0A0L142_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G492190 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.1e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MFHLVCEVRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPH 60
          MFHLVCEVRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPH
Sbjct: 1  MFHLVCEVRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPH 60

Query: 61 FISFEVPFKFGSFKLLWQK 80
          FISFEVPFKFGSFKLLWQK
Sbjct: 61 FISFEVPFKFGSFKLLWQK 79

The following BLAST results are available for this feature:

BLAST of CsaV3_4G030860 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54774.1	6.2e-39	100.00	hypothetical protein Csa_4G492190 [Cucumis sativus]	[more]

BLAST of CsaV3_4G030860 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G030860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G030860 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L142\|A0A0A0L142_CUCSA	4.1e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G492190 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G030860.1	CsaV3_4G030860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G030860	Bhi03G002272	Wax gourd	cucwgoB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G030860	Silver-seed gourd	carcucB0314
CsaV3_4G030860	Silver-seed gourd	carcucB0318
CsaV3_4G030860	Cucumber (Gy14) v1	cgycucB420
CsaV3_4G030860	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G030860	Cucurbita moschata (Rifu)	cmocucB1014
CsaV3_4G030860	Cucurbita maxima (Rimu)	cmacucB1018
CsaV3_4G030860	Cucurbita maxima (Rimu)	cmacucB1030
CsaV3_4G030860	Cucurbita moschata (Rifu)	cmocucB1001
CsaV3_4G030860	Cucurbita pepo (Zucchini)	cpecucB0605
CsaV3_4G030860	Cucurbita pepo (Zucchini)	cpecucB0613
CsaV3_4G030860	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G030860	Wild cucumber (PI 183967)	cpicucB222
CsaV3_4G030860	Bottle gourd (USVL1VR-Ls)	cuclsiB279
CsaV3_4G030860	Melon (DHL92) v3.5.1	cucmeB336
CsaV3_4G030860	Melon (DHL92) v3.6.1	cucmedB329
CsaV3_4G030860	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G030860	Watermelon (97103) v1	cucwmB357
CsaV3_4G030860	Watermelon (97103) v2	cucwmbB308