CsaV3_4G030680 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G030680
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 20622167 .. 20622364 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAAGAACAAGTGGATTGATCAGGGCGATAGATCTGATCAGTTTTCAAGAAGGGATGGACGACGGTGTTTAAAGAATGGGGAGGAAAAGGTCTGGTCAATAGTGTCTAAAGTACTCGCATTCTGGTTGGCAGCGGATATGGACGACGCTCACACAAAAAAATCAGAGACAAACGAACAGAAAGAAAATTGA

mRNA sequence

ATGGAAATGAAGAACAAGTGGATTGATCAGGGCGATAGATCTGATCAGTTTTCAAGAAGGGATGGACGACGGTGTTTAAAGAATGGGGAGGAAAAGGTCTGGTCAATAGTGTCTAAAGTACTCGCATTCTGGTTGGCAGCGGATATGGACGACGCTCACACAAAAAAATCAGAGACAAACGAACAGAAAGAAAATTGA

Coding sequence (CDS)

ATGGAAATGAAGAACAAGTGGATTGATCAGGGCGATAGATCTGATCAGTTTTCAAGAAGGGATGGACGACGGTGTTTAAAGAATGGGGAGGAAAAGGTCTGGTCAATAGTGTCTAAAGTACTCGCATTCTGGTTGGCAGCGGATATGGACGACGCTCACACAAAAAAATCAGAGACAAACGAACAGAAAGAAAATTGA

Protein sequence

MEMKNKWIDQGDRSDQFSRRDGRRCLKNGEEKVWSIVSKVLAFWLAADMDDAHTKKSETNEQKEN
BLAST of CsaV3_4G030680 vs. NCBI nr
Match: KGN54789.1 (hypothetical protein Csa_4G498030 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MEMKNKWIDQGDRSDQFSRRDGRRCLKNGEEKVWSIVSKVLAFWLAADMDDAHTKKSETN 60
          MEMKNKWIDQGDRSDQFSRRDGRRCLKNGEEKVWSIVSKVLAFWLAADMDDAHTKKSETN
Sbjct: 1  MEMKNKWIDQGDRSDQFSRRDGRRCLKNGEEKVWSIVSKVLAFWLAADMDDAHTKKSETN 60

Query: 61 EQKEN 66
          EQKEN
Sbjct: 61 EQKEN 65

BLAST of CsaV3_4G030680 vs. TrEMBL
Match: tr|A0A0A0L157|A0A0A0L157_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G498030 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MEMKNKWIDQGDRSDQFSRRDGRRCLKNGEEKVWSIVSKVLAFWLAADMDDAHTKKSETN 60
          MEMKNKWIDQGDRSDQFSRRDGRRCLKNGEEKVWSIVSKVLAFWLAADMDDAHTKKSETN
Sbjct: 1  MEMKNKWIDQGDRSDQFSRRDGRRCLKNGEEKVWSIVSKVLAFWLAADMDDAHTKKSETN 60

Query: 61 EQKEN 66
          EQKEN
Sbjct: 61 EQKEN 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54789.11.6e-29100.00hypothetical protein Csa_4G498030 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L157|A0A0A0L157_CUCSA1.1e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G498030 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G030680.1CsaV3_4G030680.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None