CsaV3_4G030110 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G030110
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 19861164 .. 19861437 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAGCCGAGATGGTTGAGGCATCTAAGCAAGGGGGGTACGCATTGAAAAATGCTAAGGGCTACACGGCCAAAGAATCTCAAACAAGTGTTGTGCGGCCTAGTGAATTCTAAACATTAAATGCCAAGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

mRNA sequence

ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAGCCGAGATGGTTGAGGCATCTAAGCAAGGGGGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

Coding sequence (CDS)

ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAGCCGAGATGGTTGAGGCATCTAAGCAAGGGGGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

Protein sequence

MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS
BLAST of CsaV3_4G030110 vs. NCBI nr
Match: KGN54762.1 (hypothetical protein Csa_4G456180 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60
          MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS
Sbjct: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60

BLAST of CsaV3_4G030110 vs. TrEMBL
Match: tr|A0A0A0L2C4|A0A0A0L2C4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G456180 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.2e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60
          MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS
Sbjct: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54762.11.1e-27100.00hypothetical protein Csa_4G456180 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L2C4|A0A0A0L2C4_CUCSA7.2e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G456180 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G030110.1CsaV3_4G030110.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None