CsaV3_4G030010 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G030010
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 19755778 .. 19756128 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAGGCAGTGATGAATTATTAACTGGTCCTCATATGGCTGATACGACTATTGAGGAAGTTTGCATTTTGAAGACACCCGCTGCAAAATCAGTCGAAGTATCCTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCAGGGCAAGATGAAAGTAGGTGGCAAAGATATCAAGAATCCTCCCTCTAGAGGAGGTGTCTGTCCTATAGTGCCTTCAACGAAGGCTACATCCATGCATACTCCTCTCAAGATTTATGAGCCACCTTTAGGCACCTCTATGAAACAGGCAGTAGAACACCCTGAACCTTCACAGTGGGTTGGTGAAAATGTAGTTTCAAATTTCTTTTAG

mRNA sequence

ATGGATGTAGGCAGTGATGAATTATTAACTGGTCCTCATATGGCTGATACGACTATTGAGGAAGTTTGCATTTTGAAGACACCCGCTGCAAAATCAGTCGAAGTATCCTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCAGGGCAAGATGAAAGTAGGTGGCAAAGATATCAAGAATCCTCCCTCTAGAGGAGGTGTCTGTCCTATAGTGCCTTCAACGAAGGCTACATCCATGCATACTCCTCTCAAGATTTATGAGCCACCTTTAGGCACCTCTATGAAACAGGCAGTAGAACACCCTGAACCTTCACAGTGGGTTGGTGAAAATGTAGTTTCAAATTTCTTTTAG

Coding sequence (CDS)

ATGGATGTAGGCAGTGATGAATTATTAACTGGTCCTCATATGGCTGATACGACTATTGAGGAAGTTTGCATTTTGAAGACACCCGCTGCAAAATCAGTCGAAGTATCCTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCAGGGCAAGATGAAAGTAGGTGGCAAAGATATCAAGAATCCTCCCTCTAGAGGAGGTGTCTGTCCTATAGTGCCTTCAACGAAGGCTACATCCATGCATACTCCTCTCAAGATTTATGAGCCACCTTTAGGCACCTCTATGAAACAGGCAGTAGAACACCCTGAACCTTCACAGTGGGTTGGTGAAAATGTAGTTTCAAATTTCTTTTAG

Protein sequence

MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF

Homology

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: KGN54752.1 (hypothetical protein Csa_4G444640 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 2.1e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60
           MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN
Sbjct: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60

Query: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
           PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF
Sbjct: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 116

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: ADN34118.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 133.7 bits (335), Expect = 4.2e-28
Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 5   SDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSR 64
           SDE LTGPH+ D+  EEV   KTP  K  E SL PSAL EEIR+GKM VGGKD+++  S+
Sbjct: 393 SDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLESHSSK 452

Query: 65  GGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
            GVCP     K +S H PLK  E PLG S KQ + +PEPSQWVGE VVSNFF
Sbjct: 453 EGVCPKAFLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFF 504

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: KGN50797.1 (hypothetical protein Csa_5G264300 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 3.5e-27
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 26  KTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPSTKATSMHTPLKI 85
           KTPAAK V+VSLRPSALLEEIR+GKMKVGGKDI+N PSRGG  PIV S KATSMH PLKI
Sbjct: 33  KTPAAKPVKVSLRPSALLEEIRRGKMKVGGKDIENLPSRGGAYPIVSSMKATSMHAPLKI 92

Query: 86  YEPPLGTSMKQAVEHPEPS 105
            EPPLGTSMKQA EHP+PS
Sbjct: 93  SEPPLGTSMKQAAEHPKPS 111

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: KGN53577.1 (hypothetical protein Csa_4G083520 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 14 MADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPS 73
          M DT IE++ ILKTP  K VE+SL  SALLEEIR+ KMKV GKDI+NP S+GGVCP VPS
Sbjct: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60

Query: 74 TKATSMHTPLKIYEPPLGTSMK 96
          TK TSMH   + +     TSMK
Sbjct: 61 TKVTSMHALSQDFR---ATSMK 79

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: KGN65353.1 (hypothetical protein Csa_1G368490 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 14 MADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSR 65
          MADT IEEV ILKTPA K VEVSL PSALLEEIR GKMKVGGKDIKNPPSR
Sbjct: 1  MADTAIEEVGILKTPATKPVEVSLHPSALLEEIRLGKMKVGGKDIKNPPSR 51

[Close]

BLAST of CsaV3_4G030010 vs. TrEMBL
Match: tr|A0A0A0L2B5|A0A0A0L2B5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G444640 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60
           MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN
Sbjct: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60

Query: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
           PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF
Sbjct: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 116

[Close]

BLAST of CsaV3_4G030010 vs. TrEMBL
Match: tr|E5GCB9|E5GCB9_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.8e-28
Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 5   SDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSR 64
           SDE LTGPH+ D+  EEV   KTP  K  E SL PSAL EEIR+GKM VGGKD+++  S+
Sbjct: 393 SDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLESHSSK 452

Query: 65  GGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
            GVCP     K +S H PLK  E PLG S KQ + +PEPSQWVGE VVSNFF
Sbjct: 453 EGVCPKAFLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFF 504

[Close]

BLAST of CsaV3_4G030010 vs. TrEMBL
Match: tr|A0A0A0KQU9|A0A0A0KQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 26  KTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPSTKATSMHTPLKI 85
           KTPAAK V+VSLRPSALLEEIR+GKMKVGGKDI+N PSRGG  PIV S KATSMH PLKI
Sbjct: 33  KTPAAKPVKVSLRPSALLEEIRRGKMKVGGKDIENLPSRGGAYPIVSSMKATSMHAPLKI 92

Query: 86  YEPPLGTSMKQAVEHPEPS 105
            EPPLGTSMKQA EHP+PS
Sbjct: 93  SEPPLGTSMKQAAEHPKPS 111

[Close]

BLAST of CsaV3_4G030010 vs. TrEMBL
Match: tr|A0A0A0KYX3|A0A0A0KYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083520 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 14 MADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPS 73
          M DT IE++ ILKTP  K VE+SL  SALLEEIR+ KMKV GKDI+NP S+GGVCP VPS
Sbjct: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60

Query: 74 TKATSMHTPLKIYEPPLGTSMK 96
          TK TSMH   + +     TSMK
Sbjct: 61 TKVTSMHALSQDFR---ATSMK 79

[Close]

BLAST of CsaV3_4G030010 vs. TrEMBL
Match: tr|A0A0A0LU69|A0A0A0LU69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G368490 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 14 MADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSR 65
          MADT IEEV ILKTPA K VEVSL PSALLEEIR GKMKVGGKDIKNPPSR
Sbjct: 1  MADTAIEEVGILKTPATKPVEVSLHPSALLEEIRLGKMKVGGKDIKNPPSR 51

The following BLAST results are available for this feature:

BLAST of CsaV3_4G030010 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54752.1	2.1e-59	100.00	hypothetical protein Csa_4G444640 [Cucumis sativus]	[more]
ADN34118.1	4.2e-28	60.71	hypothetical protein [Cucumis melo subsp. melo]	[more]
KGN50797.1	3.5e-27	83.54	hypothetical protein Csa_5G264300 [Cucumis sativus]	[more]
KGN53577.1	1.7e-16	63.41	hypothetical protein Csa_4G083520 [Cucumis sativus]	[more]
KGN65353.1	7.7e-14	88.24	hypothetical protein Csa_1G368490 [Cucumis sativus]	[more]

BLAST of CsaV3_4G030010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G030010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G030010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2B5\|A0A0A0L2B5_CUCSA	1.4e-59	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G444640 PE=4 SV=1	[more]
tr\|E5GCB9\|E5GCB9_CUCME	2.8e-28	60.71	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KQU9\|A0A0A0KQU9_CUCSA	2.3e-27	83.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1	[more]
tr\|A0A0A0KYX3\|A0A0A0KYX3_CUCSA	1.1e-16	63.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083520 PE=4 SV=1	[more]
tr\|A0A0A0LU69\|A0A0A0LU69_CUCSA	5.1e-14	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G368490 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G030010.1	CsaV3_4G030010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..73

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G030010	Silver-seed gourd	carcucB0510
CsaV3_4G030010	Silver-seed gourd	carcucB0551
CsaV3_4G030010	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G030010	Cucumber (Gy14) v1	cgycucB271
CsaV3_4G030010	Cucurbita maxima (Rimu)	cmacucB0793
CsaV3_4G030010	Cucurbita maxima (Rimu)	cmacucB1023
CsaV3_4G030010	Cucurbita moschata (Rifu)	cmocucB0784
CsaV3_4G030010	Cucurbita moschata (Rifu)	cmocucB1007
CsaV3_4G030010	Cucurbita pepo (Zucchini)	cpecucB0077
CsaV3_4G030010	Cucurbita pepo (Zucchini)	cpecucB0603
CsaV3_4G030010	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G030010	Bottle gourd (USVL1VR-Ls)	cuclsiB274
CsaV3_4G030010	Melon (DHL92) v3.5.1	cucmeB329
CsaV3_4G030010	Melon (DHL92) v3.6.1	cucmedB323
CsaV3_4G030010	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G030010	Watermelon (97103) v1	cucwmB357
CsaV3_4G030010	Watermelon (97103) v2	cucwmbB308
CsaV3_4G030010	Wax gourd	cucwgoB398
CsaV3_4G030010	Wax gourd	cucwgoB406
CsaV3_4G030010	Wax gourd	cucwgoB418
CsaV3_4G030010	Wax gourd	cucwgoB419