CsaV3_4G029780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029780
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionZf-CCHC domain-containing protein
Locationchr4 : 19442409 .. 19442729 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAGAGATGAGTTCCTCTATTTGGAACAGAGAAGACTCTCGGTTCCTGAATATGAGAGAAAATTCACGAAATTGGCGAAATACGCCTTAATATTAATCGTAGATGAGGGAGAAAGATGCAGGTGTTCTATAAACGACTTGCGGGAGGAGATCAGGACATCTATTGTGTTGATTTTGATAAGGAGTGACTACGCACAGTTGGTGGATGCAGCTCTGCGAGTGGAAAAGAGTTTGGGCTTAAAAAGATCAAGCTCTGACTCATGTGAGAAAGGAGAAGAAGGAAGTCAGAAGAACAAGAAATCTGTAATTTTAATGTTATAA

mRNA sequence

AAGAGAGATGAGTTCCTCTATTTGGAACAGAGAAGACTCTCGGTTCCTGAATATGAGAGAAAATTCACGAAATTGGCGAAATACGCCTTAATATTAATCGTAGATGAGGGAGAAAGATGCAGGTGTTCTATAAACGACTTGCGGGAGGAGATCAGGACATCTATTGTGTTGATTTTGATAAGGAGTGACTACGCACAGTTGGTGGATGCAGCTCTGCGAGTGGAAAAGAGTTTGGGCTTAAAAAGATCAAGCTCTGACTCATGTGAGAAAGGAGAAGAAGGAAGTCAGAAGAACAAGAAATCTGTAATTTTAATGTTATAA

Coding sequence (CDS)

AAGAGAGATGAGTTCCTCTATTTGGAACAGAGAAGACTCTCGGTTCCTGAATATGAGAGAAAATTCACGAAATTGGCGAAATACGCCTTAATATTAATCGTAGATGAGGGAGAAAGATGCAGGTGTTCTATAAACGACTTGCGGGAGGAGATCAGGACATCTATTGTGTTGATTTTGATAAGGAGTGACTACGCACAGTTGGTGGATGCAGCTCTGCGAGTGGAAAAGAGTTTGGGCTTAAAAAGATCAAGCTCTGACTCATGTGAGAAAGGAGAAGAAGGAAGTCAGAAGAACAAGAAATCTGTAATTTTAATGTTATAA

Protein sequence

KRDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIRSDYAQLVDAALRVEKSLGLKRSSSDSCEKGEEGSQKNKKSVILML
Homology
[Close]
BLAST of CsaV3_4G029780 vs. NCBI nr
Match: KGN54728.1 (hypothetical protein Csa_4G436990 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 3.3e-48
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 2   RDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIR 61
           RDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIR
Sbjct: 2   RDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIR 61

Query: 62  SDYAQLVDAALRVEKSLGLKRSSSDSCEKGEEGSQKNKKSVILML 107
           SDYAQLVDAALRVEKSLGLKRSSSDSCEKGEEGSQKNKKSVILML
Sbjct: 62  SDYAQLVDAALRVEKSLGLKRSSSDSCEKGEEGSQKNKKSVILML 106

[Close]
BLAST of CsaV3_4G029780 vs. NCBI nr
Match: XP_016903324.1 (PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 2.9e-12
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 0 

Query: 1   KRDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILI 60
           KRDEFL L+Q  LSV EYERK+T+L++YA +++  E +RCR     LR EIRT + +I  
Sbjct: 96  KRDEFLELKQGSLSVAEYERKYTELSRYAEMIVASESDRCRSFERGLRFEIRTLVTVIAK 155

Query: 61  RSDYAQLVDAALRVEKSLGLKRSSSDSCEKG 92
            +D++QLV+ ALRVE+S+ +K +S+    +G
Sbjct: 156 WTDFSQLVETALRVEQSI-VKENSAMELSRG 185

[Close]
BLAST of CsaV3_4G029780 vs. NCBI nr
Match: XP_008464978.1 (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 9.5e-11
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 0 

Query: 1   KRDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILI 60
           KRDEFL L+Q  LSV EYERK+T+L++YA +++  E +RCR     LR EIRT +  I  
Sbjct: 44  KRDEFLELKQGSLSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAK 103

Query: 61  RSDYAQLVDAALRVEKSLGLKRSSSD 87
             +++QLV+ ALRVE+S+  ++S+ +
Sbjct: 104 WMNFSQLVETALRVEQSIVEEKSTME 129

[Close]
BLAST of CsaV3_4G029780 vs. NCBI nr
Match: KGN47273.1 (hypothetical protein Csa_6G240700 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 11 RRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIRSDYAQLVDA 70
          R LSV +YE+KFT+LAKYA++L+  E ERC   +N LR E R  IV I +R+DYAQLVDA
Sbjct: 3  RELSVAKYEKKFTELAKYAMVLVALETERCMQFVNGLRGETRPPIVSITVRNDYAQLVDA 62

Query: 71 AL 73
          A+
Sbjct: 63 AV 64

[Close]
BLAST of CsaV3_4G029780 vs. NCBI nr
Match: XP_011656138.1 (PREDICTED: uncharacterized protein LOC105435636 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 1   KRDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILI 60
           K DEFL LEQ  LSV EYERK+TKL++YA ++IV E +RC+     L+ EIRTS+  I  
Sbjct: 36  KSDEFLRLEQGSLSVAEYERKYTKLSRYAGVIIVSESDRCKSFERGLK-EIRTSLTPIAK 95

Query: 61  RSDYAQLVDAALRVEKSL 79
            SD + LV+  LRVE+ L
Sbjct: 96  WSDCSHLVETTLRVEQIL 112

[Close]
BLAST of CsaV3_4G029780 vs. TrEMBL
Match: tr|A0A0A0KYX4|A0A0A0KYX4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G436990 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-48
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 2   RDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIR 61
           RDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIR
Sbjct: 2   RDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIR 61

Query: 62  SDYAQLVDAALRVEKSLGLKRSSSDSCEKGEEGSQKNKKSVILML 107
           SDYAQLVDAALRVEKSLGLKRSSSDSCEKGEEGSQKNKKSVILML
Sbjct: 62  SDYAQLVDAALRVEKSLGLKRSSSDSCEKGEEGSQKNKKSVILML 106

[Close]
BLAST of CsaV3_4G029780 vs. TrEMBL
Match: tr|A0A1S4E521|A0A1S4E521_CUCME (uncharacterized protein LOC103502804 OS=Cucumis melo OX=3656 GN=LOC103502804 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 0 

Query: 1   KRDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILI 60
           KRDEFL L+Q  LSV EYERK+T+L++YA +++  E +RCR     LR EIRT + +I  
Sbjct: 96  KRDEFLELKQGSLSVAEYERKYTELSRYAEMIVASESDRCRSFERGLRFEIRTLVTVIAK 155

Query: 61  RSDYAQLVDAALRVEKSLGLKRSSSDSCEKG 92
            +D++QLV+ ALRVE+S+ +K +S+    +G
Sbjct: 156 WTDFSQLVETALRVEQSI-VKENSAMELSRG 185

[Close]
BLAST of CsaV3_4G029780 vs. TrEMBL
Match: tr|A0A1S3CMU0|A0A1S3CMU0_CUCME (uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-11
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 0 

Query: 1   KRDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILI 60
           KRDEFL L+Q  LSV EYERK+T+L++YA +++  E +RCR     LR EIRT +  I  
Sbjct: 44  KRDEFLELKQGSLSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAK 103

Query: 61  RSDYAQLVDAALRVEKSLGLKRSSSD 87
             +++QLV+ ALRVE+S+  ++S+ +
Sbjct: 104 WMNFSQLVETALRVEQSIVEEKSTME 129

[Close]
BLAST of CsaV3_4G029780 vs. TrEMBL
Match: tr|A0A0A0KCJ9|A0A0A0KCJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G240700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 11 RRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIRSDYAQLVDA 70
          R LSV +YE+KFT+LAKYA++L+  E ERC   +N LR E R  IV I +R+DYAQLVDA
Sbjct: 3  RELSVAKYEKKFTELAKYAMVLVALETERCMQFVNGLRGETRPPIVSITVRNDYAQLVDA 62

Query: 71 AL 73
          A+
Sbjct: 63 AV 64

[Close]
BLAST of CsaV3_4G029780 vs. TrEMBL
Match: tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME (uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 1   KRDEFLYLEQRRLSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILI 60
           KRDEFL L+Q  LSV EYE K+T+L++YA +++  E ERCR     LR EIRT +  I  
Sbjct: 96  KRDEFLELKQGSLSVAEYEMKYTELSRYAEMIVASESERCRRFERGLRFEIRTLVTTIAK 155

Query: 61  RSDYAQLVDAALRVE 76
            ++++QLV+ AL VE
Sbjct: 156 WTNFSQLVEIALCVE 170

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54728.13.3e-48100.00hypothetical protein Csa_4G436990 [Cucumis sativus][more]
XP_016903324.12.9e-1248.35PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo][more]
XP_008464978.19.5e-1147.67PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
KGN47273.14.7e-1059.68hypothetical protein Csa_6G240700 [Cucumis sativus][more]
XP_011656138.11.0e-0953.85PREDICTED: uncharacterized protein LOC105435636 [Cucumis sativus][more]
BLAST of CsaV3_4G029780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYX4|A0A0A0KYX4_CUCSA2.2e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G436990 PE=4 SV=1[more]
tr|A0A1S4E521|A0A1S4E521_CUCME2.0e-1248.35uncharacterized protein LOC103502804 OS=Cucumis melo OX=3656 GN=LOC103502804 PE=... [more]
tr|A0A1S3CMU0|A0A1S3CMU0_CUCME6.3e-1147.67uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=... [more]
tr|A0A0A0KCJ9|A0A0A0KCJ9_CUCSA3.1e-1059.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G240700 PE=4 SV=1[more]
tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME4.5e-0950.67uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029780.1CsaV3_4G029780.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..97

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G029780Cucumber (Gy14) v2cgybcucB171
CsaV3_4G029780Cucumber (Gy14) v1cgycucB271
CsaV3_4G029780Cucurbita maxima (Rimu)cmacucB0798
CsaV3_4G029780Cucurbita pepo (Zucchini)cpecucB0078
CsaV3_4G029780Wild cucumber (PI 183967)cpicucB212