CsaV3_4G029730 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029730
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 19334422 .. 19335775 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAATTTTGTTACGTTATCGCAAAACATTCATACTTCCCTTAGTTGGAAATTAAAGGGAAAAAAAAGAGAAGAAATTAAGAAACGGAAGGTAGCTGAGAGTCAAAATCTGATTCGCAAATGTAAAGCCAGTTTTTTCTTTTTTTTAGTCCCCGAGGGTTCAAATTTTGCATGAAGAACGTTCTGTTCTTTGCGTTTCACGCTTTCTGTTCCTGCTTAATCCTCACTCAAACCACAATCACAACAATACATTACAGTAATCCTTAATCCGCCTCCAACCCTTTGCGCCTGATTTGGAGGGGGACGATCCAGCGGACTCTAAAAGCTTTGCGTTTTATCCACTTAATTGCTTCAAATTCAATTACACGAACCCATTGAATCTTTCGGTGTAAGTCTCTTTGGATCTGATCCAACCCCATTACTCTCTTTTTGTTAATCTTTCTTCCCTTCTACTTTTCTATGTCCTACTTGTTCAATTTCTTTGATTTTTAGAGCTGGGTGTAGATTTGTGTTGCTTAATTCCTCTTTTTTTTGTTCTGGGTATTGGTGTATTAGTGTTTATTTTCAGTTTTTAACCCTAAATTTTGTTAATTTGGTTCGGGAGATGCCTCTGTTGAGGTTTGTATCGTTTGGTTTTCTTGCTAGTCGCTATGCAATTTGAGATCAGTTAATATAGATAGGTATGGTGGCTTAGAGCTGTGTTAATCTATGTACATTAAGTCTTAGAGAGAATAATTGGGATTGAGAAGGGTTATTGAAAGTGTGATTAGCGAATTCCATTTATATCTCTCTGTGGAAGACTTGTAGTAGATTGATAATTTGTTCCGCAGATCTGCTGTTGGCCTTTCTCTTCTCGGCTCAACCCAACTCCACACCCCAACTCACGAATCTATTGAATTCATTTTTCTGATCCCATAGTTCCTTGTTCTTTTGGCTATTCCTCTTCAGATTCCAAAACCGTGACTACTTCATGTGCCTGTTTCGCTGACCAAAACCAGACCTTCTTCCCTGAGTCACCTCTCAGAGGCAAGAGATCATTCCCACCCTCATGTGTCAAAGTTTTTTTCATTTAGGAATATCGAAGTGAGTGAGGGCTAATCTTAAAGGTTTCATTTTAGTATCTTTTGTGTATTTAGTTAAAACCAACGGCCCCACTGAACCTGAAAATTTGGGTTGTTTGGGTTAAAAACAAATCTCAATCAGAACTTGGCCAATTCACGAACATCCTTTTAAGAATATGGCATAAGAACTCACCAGTGCTAAGACAAAATTTCATCTATTGCTTTCTTAGGATCTCTCATATATATTCGTTAGTGCATAATTGCAGGTTATTGACAAGGTTTGAGTGGTGA

mRNA sequence

ATGTATAATTTTGTTACGTTATCGCAAAACATTCATACTTCCCTTAGTTGGAAATTAAAGGGAAAAAAAAGAGAAGAAATTAAGAAACGGAAGGGGGACGATCCAGCGGACTCTAAAAGCTTTGCGTTTTATCCACTTAATTGCTTCAAATTCAATTACACGAACCCATTGAATCTTTCGGTGTTATTGACAAGGTTTGAGTGGTGA

Coding sequence (CDS)

ATGTATAATTTTGTTACGTTATCGCAAAACATTCATACTTCCCTTAGTTGGAAATTAAAGGGAAAAAAAAGAGAAGAAATTAAGAAACGGAAGGGGGACGATCCAGCGGACTCTAAAAGCTTTGCGTTTTATCCACTTAATTGCTTCAAATTCAATTACACGAACCCATTGAATCTTTCGGTGTTATTGACAAGGTTTGAGTGGTGA

Protein sequence

MYNFVTLSQNIHTSLSWKLKGKKREEIKKRKGDDPADSKSFAFYPLNCFKFNYTNPLNLSVLLTRFEW
Homology
[Close]
BLAST of CsaV3_4G029730 vs. NCBI nr
Match: KGN54723.1 (hypothetical protein Csa_4G433980 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 3.7e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MYNFVTLSQNIHTSLSWKLKGKKREEIKKRKGDDPADSKSFAFYPLNCFKFNYTNPLNLS 60
          MYNFVTLSQNIHTSLSWKLKGKKREEIKKRKGDDPADSKSFAFYPLNCFKFNYTNPLNLS
Sbjct: 1  MYNFVTLSQNIHTSLSWKLKGKKREEIKKRKGDDPADSKSFAFYPLNCFKFNYTNPLNLS 60

Query: 61 VLLTRFEW 69
          VLLTRFEW
Sbjct: 61 VLLTRFEW 68

[Close]
BLAST of CsaV3_4G029730 vs. TrEMBL
Match: tr|A0A0A0KYW7|A0A0A0KYW7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433980 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MYNFVTLSQNIHTSLSWKLKGKKREEIKKRKGDDPADSKSFAFYPLNCFKFNYTNPLNLS 60
          MYNFVTLSQNIHTSLSWKLKGKKREEIKKRKGDDPADSKSFAFYPLNCFKFNYTNPLNLS
Sbjct: 1  MYNFVTLSQNIHTSLSWKLKGKKREEIKKRKGDDPADSKSFAFYPLNCFKFNYTNPLNLS 60

Query: 61 VLLTRFEW 69
          VLLTRFEW
Sbjct: 61 VLLTRFEW 68

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029730 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54723.13.7e-32100.00hypothetical protein Csa_4G433980 [Cucumis sativus][more]
BLAST of CsaV3_4G029730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029730 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYW7|A0A0A0KYW7_CUCSA2.4e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029730.1CsaV3_4G029730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G029730Cucumber (Gy14) v2cgybcucB171
CsaV3_4G029730Cucumber (Gy14) v1cgycucB065
CsaV3_4G029730Cucurbita maxima (Rimu)cmacucB0798
CsaV3_4G029730Cucurbita moschata (Rifu)cmocucB0775
CsaV3_4G029730Cucurbita pepo (Zucchini)cpecucB0078
CsaV3_4G029730Cucurbita pepo (Zucchini)cpecucB0087
CsaV3_4G029730Wild cucumber (PI 183967)cpicucB212
CsaV3_4G029730Bottle gourd (USVL1VR-Ls)cuclsiB273
CsaV3_4G029730Melon (DHL92) v3.5.1cucmeB337
CsaV3_4G029730Melon (DHL92) v3.6.1cucmedB330
CsaV3_4G029730Wax gourdcucwgoB412