CsaV3_4G029520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 19078369 .. 19078623 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTCGTAGTGGAGCTAGCGGTGAATGACGCACGTTTACGGCTTTATTCTGGTGGTGATCGACGTCGGGTAGAAGCATTTTTTAGGCATTGTTTTTGCGTTTCTACGAGTCATTCAACATTGGGTTTCGACCGGGTTTGCTTCAGTATTGGGTTTTCTACGGGTTTGGATCTCGGTATCAGAGGTTTTAGTGTTGGTCTCTCATCCTTCTTGGCATTTGGTTGGCGGTATAGTCGGGCTTGTCTTGGTTGA

mRNA sequence

ATGACGTTCGTAGTGGAGCTAGCGGTGAATGACGCACGTTTACGGCTTTATTCTGGTGGTGATCGACGTCGGGTAGAAGCATTTTTTAGGCATTGTTTTTGCGTTTCTACGAGTCATTCAACATTGGGTTTCGACCGGGTTTGCTTCAGTATTGGGTTTTCTACGGGTTTGGATCTCGGTATCAGAGGTTTTAGTGTTGGTCTCTCATCCTTCTTGGCATTTGGTTGGCGGTATAGTCGGGCTTGTCTTGGTTGA

Coding sequence (CDS)

ATGACGTTCGTAGTGGAGCTAGCGGTGAATGACGCACGTTTACGGCTTTATTCTGGTGGTGATCGACGTCGGGTAGAAGCATTTTTTAGGCATTGTTTTTGCGTTTCTACGAGTCATTCAACATTGGGTTTCGACCGGGTTTGCTTCAGTATTGGGTTTTCTACGGGTTTGGATCTCGGTATCAGAGGTTTTAGTGTTGGTCTCTCATCCTTCTTGGCATTTGGTTGGCGGTATAGTCGGGCTTGTCTTGGTTGA

Protein sequence

MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLGIRGFSVGLSSFLAFGWRYSRACLG
Homology
[Close]
BLAST of CsaV3_4G029520 vs. NCBI nr
Match: KGN54705.1 (hypothetical protein Csa_4G430870 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 7.0e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLG 60
          MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLG
Sbjct: 1  MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLG 60

Query: 61 IRGFSVGLSSFLAFGWRYSRACLG 85
          IRGFSVGLSSFLAFGWRYSRACLG
Sbjct: 61 IRGFSVGLSSFLAFGWRYSRACLG 84

[Close]
BLAST of CsaV3_4G029520 vs. TrEMBL
Match: tr|A0A0A0KYF5|A0A0A0KYF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G430870 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.6e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLG 60
          MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLG
Sbjct: 1  MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLG 60

Query: 61 IRGFSVGLSSFLAFGWRYSRACLG 85
          IRGFSVGLSSFLAFGWRYSRACLG
Sbjct: 61 IRGFSVGLSSFLAFGWRYSRACLG 84

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54705.17.0e-41100.00hypothetical protein Csa_4G430870 [Cucumis sativus][more]
BLAST of CsaV3_4G029520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYF5|A0A0A0KYF5_CUCSA4.6e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G430870 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029520.1CsaV3_4G029520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G029520Silver-seed gourdcarcucB0249
CsaV3_4G029520Silver-seed gourdcarcucB0616
CsaV3_4G029520Cucumber (Gy14) v2cgybcucB171
CsaV3_4G029520Cucumber (Gy14) v1cgycucB065
CsaV3_4G029520Cucurbita maxima (Rimu)cmacucB0798
CsaV3_4G029520Cucurbita maxima (Rimu)cmacucB1021
CsaV3_4G029520Cucurbita moschata (Rifu)cmocucB0775
CsaV3_4G029520Cucurbita moschata (Rifu)cmocucB1005
CsaV3_4G029520Cucurbita pepo (Zucchini)cpecucB0078
CsaV3_4G029520Cucurbita pepo (Zucchini)cpecucB0087
CsaV3_4G029520Cucurbita pepo (Zucchini)cpecucB0599
CsaV3_4G029520Wild cucumber (PI 183967)cpicucB212
CsaV3_4G029520Bottle gourd (USVL1VR-Ls)cuclsiB273
CsaV3_4G029520Melon (DHL92) v3.5.1cucmeB337
CsaV3_4G029520Melon (DHL92) v3.6.1cucmedB330
CsaV3_4G029520Watermelon (Charleston Gray)cucwcgB321
CsaV3_4G029520Watermelon (97103) v1cucwmB358
CsaV3_4G029520Watermelon (97103) v2cucwmbB310
CsaV3_4G029520Wax gourdcucwgoB412