CsaV3_4G029330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 18832619 .. 18833068 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCCTGATATCTGTTTAGTTGGCTTGGCTGTTATTAAAATATGAAACTCATGACCCAATCCAAAGTGTTCACTAGCTTACTCCTTTTACAAATAGGTAGTAGAGAGACCCATCCCTTTAATGGTGGTACATAGAGGGAGATAGGGAGTTTATCTTTAGTCTGTCAAGTTTCCCCACATGTCCTGTTCTTTATTGGTTGCTGTCTATCATATCCGACAACTAGTTCCTCCACGAGTGGCTCCAACATAATAATGCCATTAGATTTTCTGCTTGCAGTTCAGATGTCAAGGTGAGGTTCATAAAATCCCGGAACCTACTGCTTCTTGTGTAATCAGGGTGGAAGAGATTCATATGTTGATATTGTTAGGATGAAGAAGCAGCCAGCTGAGTTATATTTTTTTTGCTTTCAGAGCTCGAGGGACAGAGGATGATGACGCAGGCACTTAA

mRNA sequence

ATGTCCCCTGATATCTGTTTAGTTGGCTTGGCTAGGGAGATAGGGAGTTTATCTTTAGTCTGTCAAGTTTCCCCACATGTCCTGTTCTTTATTGGTTGCTGTCTATCATATCCGACAACTAGTTCCTCCACGAGTGGCTCCAACATAATAATGCCATTAGATTTTCTGCTTGCAGTTCAGATGTCAAGAGCTCGAGGGACAGAGGATGATGACGCAGGCACTTAA

Coding sequence (CDS)

ATGTCCCCTGATATCTGTTTAGTTGGCTTGGCTAGGGAGATAGGGAGTTTATCTTTAGTCTGTCAAGTTTCCCCACATGTCCTGTTCTTTATTGGTTGCTGTCTATCATATCCGACAACTAGTTCCTCCACGAGTGGCTCCAACATAATAATGCCATTAGATTTTCTGCTTGCAGTTCAGATGTCAAGAGCTCGAGGGACAGAGGATGATGACGCAGGCACTTAA

Protein sequence

MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTSGSNIIMPLDFLLAVQMSRARGTEDDDAGT
Homology
[Close]
BLAST of CsaV3_4G029330 vs. NCBI nr
Match: KGN54683.1 (hypothetical protein Csa_4G425720 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTSGSNIIMPLDFLLAVQ 60
          MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTSGSNIIMPLDFLLAVQ
Sbjct: 1  MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTSGSNIIMPLDFLLAVQ 60

Query: 61 MSRARGTEDDDAGT 75
          MSRARGTEDDDAGT
Sbjct: 61 MSRARGTEDDDAGT 74

[Close]
BLAST of CsaV3_4G029330 vs. TrEMBL
Match: tr|A0A0A0KYT0|A0A0A0KYT0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G425720 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.2e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTSGSNIIMPLDFLLAVQ 60
          MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTSGSNIIMPLDFLLAVQ
Sbjct: 1  MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTSGSNIIMPLDFLLAVQ 60

Query: 61 MSRARGTEDDDAGT 75
          MSRARGTEDDDAGT
Sbjct: 61 MSRARGTEDDDAGT 74

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54683.11.2e-33100.00hypothetical protein Csa_4G425720 [Cucumis sativus][more]
BLAST of CsaV3_4G029330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYT0|A0A0A0KYT0_CUCSA8.2e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G425720 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029330.1CsaV3_4G029330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G029330CSPI04G18950Wild cucumber (PI 183967)cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G029330Silver-seed gourdcarcucB0616
CsaV3_4G029330Cucumber (Gy14) v2cgybcucB171
CsaV3_4G029330Cucumber (Gy14) v1cgycucB544
CsaV3_4G029330Cucurbita maxima (Rimu)cmacucB0798
CsaV3_4G029330Cucurbita maxima (Rimu)cmacucB1021
CsaV3_4G029330Cucurbita moschata (Rifu)cmocucB1005
CsaV3_4G029330Cucurbita pepo (Zucchini)cpecucB0078
CsaV3_4G029330Cucurbita pepo (Zucchini)cpecucB0599
CsaV3_4G029330Bottle gourd (USVL1VR-Ls)cuclsiB273
CsaV3_4G029330Melon (DHL92) v3.5.1cucmeB337
CsaV3_4G029330Melon (DHL92) v3.6.1cucmedB330
CsaV3_4G029330Watermelon (Charleston Gray)cucwcgB321
CsaV3_4G029330Watermelon (97103) v1cucwmB358
CsaV3_4G029330Watermelon (97103) v2cucwmbB310
CsaV3_4G029330Wax gourdcucwgoB412