CsaV3_4G029300 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G029300
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 18798094 .. 18798574 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAATATTATACCCAAAAACATACTCTCTCGGGCGAAGCCACCATTTTGGAAACTCATTCATTCAAAACCCTCACCCCATTCGAAACCCCCCACACACACCCAAACCCTCTGCCGCCGGCCGTCCACAACTTCGACCGTTTGCTTCCATTGTCGTCGACGACGTCTGCCCACCCCAAAGGAACCCCGCGCGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCCGTTGTAAACGTTCACCTCCATTCAAAAAAACCCATTCGAAACCCCCCACACACCGAAACCCTCTGCCGCTGGCCGTTCACAACACCGACTGTTTGCTTCCATTGTTGTCGACAACGACTGCCCACCCCAAAGGACCCCCCGCGCGCGAAGTCAATCTTCTAGAAACCTCGGCCCATCCGTTAGCAACAGGAAGGGTCCGTGATATGTCATATGGGGAATTAGTTTCGCTTCCGCGTCTATGTATTAGTTTTCCA

mRNA sequence

CAAAATATTATACCCAAAAACATACTCTCTCGGGCGAAGCCACCATTTTGGAAACTCATTCATTCAAAACCCTCACCCCATTCGAAACCCCCCACACACACCCAAACCCTCTGCCGCCGGCCGTCCACAACTTCGACCGTTTGCTTCCATTGTCGTCGACGACGTCTGCCCACCCCAAAGGAACCCCGCGCGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCCGTTGTAAACGTTCACCTCCATTCAAAAAAACCCATTCGAAACCCCCCACACACCGAAACCCTCTGCCGCTGGCCGTTCACAACACCGACTGTTTGCTTCCATTGTTGTCGACAACGACTGCCCACCCCAAAGGACCCCCCGCGCGCGAAGTCAATCTTCTAG

Coding sequence (CDS)

CAAAATATTATACCCAAAAACATACTCTCTCGGGCGAAGCCACCATTTTGGAAACTCATTCATTCAAAACCCTCACCCCATTCGAAACCCCCCACACACACCCAAACCCTCTGCCGCCGGCCGTCCACAACTTCGACCGTTTGCTTCCATTGTCGTCGACGACGTCTGCCCACCCCAAAGGAACCCCGCGCGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCCGTTGTAAACGTTCACCTCCATTCAAAAAAACCCATTCGAAACCCCCCACACACCGAAACCCTCTGCCGCTGGCCGTTCACAACACCGACTGTTTGCTTCCATTGTTGTCGACAACGACTGCCCACCCCAAAGGACCCCCCGCGCGCGAAGTCAATCTTCTAG

Protein sequence

QNIIPKNILSRAKPPFWKLIHSKPSPHSKPPTHTQTLCRRPSTTSTVCFHCRRRRLPTPKEPRARSQSFGNPGPSVVNVHLHSKKPIRNPPHTETLCRWPFTTPTVCFHCCRQRLPTPKDPPRAKSIF

Homology

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BLAST of CsaV3_4G029300 vs. NCBI nr
Match: KGN65289.1 (hypothetical protein Csa_1G298170 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09
Identity = 45/98 (45.92%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 7   NILSRAKPPFWKLIHSKPSPHSKPPTH----------TQTLCRRPSTTSTVCFHCRRRRL 66
           N+L     PF  L   + +P   P TH          +  L    STTST          
Sbjct: 149 NLLEAPAHPFETLTSIRKNPFETPHTHRNPLPPDVHKSDRLLPMSSTTST---------- 208

Query: 67  PTPKEPRARSQSFGNPGPSVVNVHLHSKKPIRNPPHTE 95
             PKEPRARSQSFGNP PSV N HLHSKK IRNPPH++
Sbjct: 209 -HPKEPRARSQSFGNPCPSVRNAHLHSKKSIRNPPHSQ 235

[Close]

BLAST of CsaV3_4G029300 vs. TrEMBL
Match: tr|A0A0A0LWC3|A0A0A0LWC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G298170 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 45/98 (45.92%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 7   NILSRAKPPFWKLIHSKPSPHSKPPTH----------TQTLCRRPSTTSTVCFHCRRRRL 66
           N+L     PF  L   + +P   P TH          +  L    STTST          
Sbjct: 149 NLLEAPAHPFETLTSIRKNPFETPHTHRNPLPPDVHKSDRLLPMSSTTST---------- 208

Query: 67  PTPKEPRARSQSFGNPGPSVVNVHLHSKKPIRNPPHTE 95
             PKEPRARSQSFGNP PSV N HLHSKK IRNPPH++
Sbjct: 209 -HPKEPRARSQSFGNPCPSVRNAHLHSKKSIRNPPHSQ 235

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65289.1	4.8e-09	45.92	hypothetical protein Csa_1G298170 [Cucumis sativus]	[more]

BLAST of CsaV3_4G029300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G029300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G029300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWC3\|A0A0A0LWC3_CUCSA	3.2e-09	45.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G298170 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029300.1	CsaV3_4G029300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G029300	Silver-seed gourd	carcucB0616
CsaV3_4G029300	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G029300	Cucumber (Gy14) v1	cgycucB544
CsaV3_4G029300	Cucurbita maxima (Rimu)	cmacucB0798
CsaV3_4G029300	Cucurbita maxima (Rimu)	cmacucB1021
CsaV3_4G029300	Cucurbita moschata (Rifu)	cmocucB1005
CsaV3_4G029300	Cucurbita pepo (Zucchini)	cpecucB0078
CsaV3_4G029300	Cucurbita pepo (Zucchini)	cpecucB0599
CsaV3_4G029300	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G029300	Bottle gourd (USVL1VR-Ls)	cuclsiB273
CsaV3_4G029300	Melon (DHL92) v3.5.1	cucmeB337
CsaV3_4G029300	Melon (DHL92) v3.6.1	cucmedB330
CsaV3_4G029300	Watermelon (Charleston Gray)	cucwcgB321
CsaV3_4G029300	Watermelon (97103) v1	cucwmB358
CsaV3_4G029300	Watermelon (97103) v2	cucwmbB310
CsaV3_4G029300	Wax gourd	cucwgoB412