CsaV3_4G028920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G028920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionribosomal RNA-processing protein 17
Locationchr4 : 18415199 .. 18421970 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATATTTTATATTTGTATTTCATTTCCATCTTCTTTTTTATATTTTTCCTTGAGCAATTTTTCTTATAAAAGAATTTTCACTTCTTCGTATATCATTTTGTCTTAAATAAACACTTCAAAATTGGTTTATTTTCACGATCCCCAATTTTTTCAGCGTTAAAAGAGGATTCACATTTATTTCATCAAAACCAAAAAAAAAAGAAAAGAAAAAAAGACCTAAACAAGCCTTGTAGCGCCCGAATTTGGAGCTAAAAACGCAAGGCGAGGGTCTTCTTTGTAGAGTGCGGAACTCACGGCGTTGTGTCTCAGTTTTGGAGGTTAGAGCGGCGGGGTCTTTTGCTCTCTGTTCAACGGCGTCGTAGAAGTCGAGTTTGTTTATTCTCTTTCAAGAGAGTTTATTCTCTTTCAAGAGAGTTTATTCCCATGGTGAAGAACGACGGAGAAGAAGGAGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAGGACTTGAGGTTTTTCTTCATTAATGGGTTAATTTGGACTTCTGTTTGATTTCGATTACTATCGATTTTCCTTCTGTGGTTAATTGCTGTTTTCTTAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATGCGCATCGAAGCACGAAAAAAGGTTTGGAGAACTTTTCTAATTTTGAGAACCAACTGCTGAAAAAATAGATAGCTCTTTTATCCTTTGGAAGACAGCTATTTAGAGTTTATATAGGAAGAGGAATCTACAAAAGAGAGTTGTTTTCTTTGAATAATACCACTAGCATTCGATGAGCTTAGGATAGAGCATGAGAGAATTCCCCTCTGTAGATTGTTGATTTCCCAGCAGAACTGCTGAGCCAAGCACATTATTAATTTTTTGAAACGTTAATTTTCTTCGGGCTATGGAGATGAGGCTGTCTGTAAACTAAAGGTGCGGGAATTTTTCTAGTAGTATGGAAGTACTATACTCCCTTTGTTCACACACACTATAAATTTACCTTATAAATACTATGATAGTACCCGGATATATTGAATATAAAAATAATAGAAATACACGGTAAACCATGTGATTCGAGGTACTTGGACCCTCCTTTCTTGAGATCACACTCAAGCCTATATTGAGATAACTCTTAAGCCACAGCTCATATACCAAGTATTGTCTATCTTCTCCATTCCCGTCTCCCTCTATTTTTTTTATAAGAAACAAACTTCATCAATGTATGAATTTTGTAAAAACGGTCAAGGTTGAAGCCAATTGAGTAACATAATAGCTCTCCAATTTGTCAATAGGGAAGAAAAGGTGTATGATTTAGAGAAAGATGTGCTTTTACACCACCTTACAGCCTGATAGATAATGACGTCAAAGTAGCTATCAAAAGAGCTTCTCTTATCGTTGAAGAGGCGGTTGTTTCTGTCCTTCCAAGTGGTCCATAAGAAATCACAAATCATATGCATCCACATGTGTTGCTTTTGTTTAGTCAAGGGGTGTCTTGGGAGAGCATATGAGAGAGCGGCAATGGTGTCATTTGGGAGGGCTGTGTACCATCCTAAGGAAAGGAATATTTCCTTCCAAACCCTCTCGGAAAAGTGACAGTCTAAAGAAAATGGTTAGATGAGCTGGGGCAAACTTTGCAGATGAGATAACAATGAGGGAGATGGCCTTACAGGGAAGCTGGGTTTGTAACCAACAAATATAAAACTCACTCCCTAACTGATTATTATTATAGCTAATAAATATAACCCACTTTCTAACTGATTACTATTATGCCCTTAATACCCTAATAACCCCCAAAACCAATCCTATAGACCAAGTTAGTGGGTCTCCCTCTATTCTTAAAAACCTGTGTTCATTCTCCCATAGAATAGAAAATTTCGCCCTACAGATGCCAATTTGTTCTTCCACCTTGTGTTTGTCCAAGGTTATGTGAGTTGTTCAATCCTTAGTTGCAGGGGTCACATTGTATTTGGAAGATTTGCACTTACCTATCTGATAATTACAAAAGGCCTTAGCCATTGAGGCTCATTACTAAGCACTGAACCAAATAACCTGCCACAACTCTCCCTTTTATCTCTCAACACCTCCATGTCGCCTACCATCTCACTCAAGCCACTTTGCGCATTCTTTCATTTTCTTTCTGAATGTAAGTTTTTGTTTCCATTAAAACAAATCATGTATCCTTCAAATAAAATGCTACAAATTAGTCATCTTGTATGTGTTGTATTTTATGAAGACTTTTATAGCATAAGTTGTGTCAAATATTATTGATTAGAGGAAACAAGGAAGGGAACCACCTTTGGTGCATCTATCTTTTTTTTCCATAACATCTGGGACACATTCTCTGAAAGTTTCGCGTAATCTTGCAGAGAAAATTAGAAAAGGATCTGGTGCTGCATGGTGGTGTTCTTCCAGCTGACCGGGCGGTTGATGACCAGAATGATGATCAAGGGAATGAGGAAGAGGAACCATTAGCACCACTTTCTGGTAATTTTATTAACGATTGCATTGCACATTAAAATATTTAGTGCATGTGATTAGCCATCTTACTAGCTTTGGTTAAAATACAAGTATGTTCAATTAATAAAAATGGCACACAATGGTTAGTTACAAGTTTTTTCTCTTGTACAAGTGGAAAAACGAAGTATTCATCTTTAAGAACCTAATCAGATATTATTTATGCTCACAGAGAAGCTAAAAGTCAGTTATATATGAAAAATTAAGTATGCAAGTTGATTACATTGACAATGATATGCATTCTTTCAGAAAAACAGTAATCTTCATTTGTATTAGCTTGAAACATGTTTCAATAATTAACCTCTGGATGCTAAGAAACATGGATACAAATATGAGTCATGAATATGCGATATGGATACAACGACATGCTAAGAAGCAAGGACACTTTAGTTTGGCTAACGTGTTTGTGTCGGACACTTGGACATTCCAGCACTTGGTGGACACCTATCGAACACTTATTATTGTAACAAATGCATTAGACATGCATAGAACACTTGTTGAGCAGCCTGTAAAGAGACTTATATGACAACAATAATAACTTTTGAGTGTGGAATACATCAAGCTAAGTCTTTTAAGCATATAAATGTATCAATTCATTTACTAAGAATTTTCTTCTACTATAAAAATGATATATTGTTAAAAATGATATATTTTTAAAAATGAATATTTTAATAAACGTGTCCTTGTCATGTTGTGTCCTAGATTTTTTAAGAATGACGTGTTGCTATGTCCGTGTTGTGTTGTATATGTGTCTGTGGTTCTTAGGTGACTTATAGACCCCCTAGTTTACATCATTATGTTCGTAGAGGAAAAAAAGGCAAGGAAATGGTTACTAATGAGTAGGGTAAGTCATCAATGGATAGGATAATCATCTTGGGTAGTTTCGGGTGGTTAGATGTTGGTTATACCAGGAGTTATTTCACAGTTATTTATTTCACCTTCGGCCACTGCATAGGTCGATGTGAGGTCTTGAACCCTCTATTTGTATAACTTAGTCTTTGCCCATTGTTTCAGTCCTTTGACAAAACAGAGGACTGTTTTTTTTCTGACATATCACTTATGTCTAACATCAGTCCCACAAATTGCTTCACATACTCCCTAATATTGGCAATAAGTTTTAATTCAAGCAGTTTTCGCCGAGCCATAATTTCAACTTGTCGAGAAAAAACTGCGAGTCGAGTTCTTTCTTAGAGTGTCCCAGGTGTCTATTGTGCAACGTTCTTCTTGAATGTCAACATATCAGGACCTCGACCATAACTTTGCATCTTTAGACAGATGCATGGTCACCAACGTCATTTTGGCCTCTTCTATAACTGTACTTGTAGCCTTGAAATACTGCTCAAGATCAAAGATGAAATTCTTTAAGGCATTCACATCCCTTGCCTCACAGAAGGGCTTGGGTTCGGGAATCTTTATTTTGCCAGTTGGGATTGCTCCTCCAGTTGGAGCTTGGTTTTCCATTACTCGCACTGTGAGGTTCACCTTCGTGTTTACCTCTGTGATTTCATTCCTAACTACATCGAGGGTAGCTCGAAAGTCCTCTGACATGCCATGTATCATTTCCAACATCGTCTTTTGAGAGCTATCTAGCTCAATAACACGTTCTTCTGTATGGGTAACAAAGCACGTCAAACTGTTCCCATGCTCATGGCTACCAGTTCTTACCACTTTTGTCTCCAGAGTGTTGACTGTTGCCAACAACTTTTGTATGGATAATCCGTTGAGGCGATTGGTCATCGCGTCAATAACATCGACTTTCTCTGAAATTTCTTCAAGTCGAGACTCCAAGAAACAAATGGAGTCAGAAACTTCAACTAGGTAGAGTATCTGCTCTTCAAGCTCTACTAGTCGGTCTGCATAGGCCTTGCCCGGTTGTTTCGTCGTGGACGTGTTTGTGTCTTAACCGTCAATAAGCCAACTTGGCTATGATACCAATTTTCACAATTGCATCTTTTCAAACACTAGACAGTCGATTGTGCAGCACTTGGTCAACAAGTCAATCGGTCAAAATCCGAAAATCGTGGTCAAACTCGCGGTATGATGATGCCTTCCTTCACGTTCTTGAGAAAATTGTTCTATAAAACGTGTGAGAAAAAAATTCATTGAAATCATCGTATAAGAAAACATTGAAGACTGTCAATTGCAAAAAGAAGACTTTAATTGCAAAGAGCACGACAAGGCTTGGTCGGGGATTCAACTACTATGTCTCTCATAAAGTACATTTTGAACATTTCCAGCTTTGGTAGGCTTGCATATGAAAAAGCTGAAACGTCACACCTTAGGTTTATTACGTAAAAAAGAAACAAACAAGCTAAACTAAATACAATACATAAAGACAAGGTAAATTGGAGTATTTGGGCATGCGGTCATAGGCAAACAACGTCTTGGGCATGCATGCTCGTTACAATCGGCACCCATGTTTTAAATTGGCCATTGTAATTAAATTTAAACGAAAAATTGATTAGATGCTGAAATGGTCCGATAAGTTGGAACAAAAGCTTATTTTTTATTTTCTCTCTCCTCTATTTTCATCCTCCCGCTTTCTCTCTCCCTAATCTTCATCTCTTTTATTCTCTCTCCTACCCCCATAGCCTATCTCCTAGAACAAAACTGAGGAAAAGAAACACATTTTTTGTGTGTTTCTTCTCTCATAACCTATCCTCTCTCACAAGCCTGCACCTCCGTCTAAGGAACATTTTTTTTGGAGATCAATACCGTTTAAATTATCCTCCTTGGAATCCCTTGACCAAGATAATTCATTTTCAAAGAACGGGGCATATGAATACGATTTTCACATTCCCACTCTAAATTACCATCTACAGAATCTGAACCACCTGTATACCATCTCTGTAGGAGATAATTGGTACAAATTGGGGCTATAGTGTTCGAAAAAGTTTCTCTCATTGGACACTAGATTAAATTCTAATTGACTTTGATTGTTGTTCAAGAGTTGTTGTAAGAACTTGAAGCCACTGTCTTGGCCAGTTCCCACTGTTCGGAAAATATTGATAAATGTCTAAGAAGTCAAAGGTTCAATCCATGGTGGCTACCTACCTGGAAACTAATTTCCTATAGATTTTCCTGACAACAAAATGTTGTAGGGTTTTATGAGATTAGTCGAGGTACGTGCAAGTTTGCCTGGACACTCCCGATTATAAATAAAATTGTCAATTTAAAACATGAGGGAGTAGATGCACTTATTTTTCAAAACGTAGGGACCACATTTGATTATTTTTGTCAATGTGTCTATTTATTGTACTTAACAAGTGTTTGATGTGTGTCTAACGAGTTGGTCCTATTTTTTACTTTGTGCAACTAGTGTTTGAAAACACGTCTATTTTATGAACAAGTGTCCAATACATATCTCATGGATATTAGAGTGTCCAAATGTCTTGACATGCTAGCTAAGTTAAAGTGTATGTGCTTCTTAGACTAGAAACGTGAGTATCATATTTGATCCAAACATGCCTTTGATTCTTTGTAGAGGCAACAACGTATGACAATGGAAATGTCAAAGTCACTGTGACAACAAGTGAGGTATCTCGGGAAGACGAAATCGATCCAATTGACAAGCCACAGACAGCAACAGTAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGCAAAACAGAGGGGAAGGCCAAAACTTCGAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGATAATAGCTTCTTACCTACCTCTGTCCTAAATGTTCAATGCGATATGATTTATTTGTTTTATCATGAGAATATGTAGTGATCTTGAGCATTGGGTGTCTTTGAGGGTTTTGTATTATTACATTATAAAAGCTTTCCCGTTTTGCAAACTGACTGCAATTTTTCTTTTTATGTGCAGCTCGATTTGTTTTCATTCAGCATTCCTAGAAAGAAAAAAATCATCCTAGTAAAGAAAAATTATCGTATTGCTTTACAAGTATCATGTTTGATAATTAATATATTTTTGGAATAACAAATTAGTTTTCTTTAGCCTCAAATTTCATTTCTTATGGTAAATGGGAAAGTATCGTGTATATCTAGTCTCGACGTTCACCGTTTGGTAAAAGTTTAGTGGTTGAAGAATCTAGATCTACTTTCGCTATTTCAAGAACG

mRNA sequence

ATGGTGAAGAACGACGGAGAAGAAGGAGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAGGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATGCGCATCGAAGCACGAAAAAAGAGAAAATTAGAAAAGGATCTGGTGCTGCATGGTGGTGTTCTTCCAGCTGACCGGGCGGTTGATGACCAGAATGATGATCAAGGGAATGAGGAAGAGGAACCATTAGCACCACTTTCTGAGGCAACAACGTATGACAATGGAAATGTCAAAGTCACTGTGACAACAAGTGAGGTATCTCGGGAAGACGAAATCGATCCAATTGACAAGCCACAGACAGCAACAGTAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGCAAAACAGAGGGGAAGGCCAAAACTTCGAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

Coding sequence (CDS)

ATGGTGAAGAACGACGGAGAAGAAGGAGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAGGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATGCGCATCGAAGCACGAAAAAAGAGAAAATTAGAAAAGGATCTGGTGCTGCATGGTGGTGTTCTTCCAGCTGACCGGGCGGTTGATGACCAGAATGATGATCAAGGGAATGAGGAAGAGGAACCATTAGCACCACTTTCTGAGGCAACAACGTATGACAATGGAAATGTCAAAGTCACTGTGACAACAAGTGAGGTATCTCGGGAAGACGAAATCGATCCAATTGACAAGCCACAGACAGCAACAGTAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGCAAAACAGAGGGGAAGGCCAAAACTTCGAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

Protein sequence

MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
Homology
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BLAST of CsaV3_4G028920 vs. NCBI nr
Match: XP_011653832.1 (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis sativus] >KGN54640.1 hypothetical protein Csa_4G414400 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 4.2e-81
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60
           MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD 120
           XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD
Sbjct: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD 120

Query: 121 NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR 180
           NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR
Sbjct: 121 NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR 180

Query: 181 PKLRSKRDKKKGRKKK 197
           PKLRSKRDKKKGRKKK
Sbjct: 181 PKLRSKRDKKKGRKKK 196

[Close]
BLAST of CsaV3_4G028920 vs. NCBI nr
Match: XP_008455785.1 (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 167/196 (85.20%), Postives = 169/196 (86.22%), Query Frame = 0 

Query: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60
           MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD 120
           XXXXXXXXXXXXXXXX LEKDLVL+GGVLPADRAVD            PLAP SEA TYD
Sbjct: 61  XXXXXXXXXXXXXXXXXLEKDLVLYGGVLPADRAVDXXXXXXXXXXXXPLAPFSEARTYD 120

Query: 121 NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR 180
           NGNVKVTVTTSEVSRE EIDPIDKPQTA   AQLLGKDKKHNLPITKKKLFKKVAKQR R
Sbjct: 121 NGNVKVTVTTSEVSREGEIDPIDKPQTA--IAQLLGKDKKHNLPITKKKLFKKVAKQRSR 180

Query: 181 PKLRSKRDKKKGRKKK 197
           PKL       KGRKKK
Sbjct: 181 PKLXXXXXXXKGRKKK 194

[Close]
BLAST of CsaV3_4G028920 vs. NCBI nr
Match: XP_022926799.1 (ribosomal RNA-processing protein 17 [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 140/175 (80.00%), Postives = 155/175 (88.57%), Query Frame = 0 

Query: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60
           MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHK XXXXXXXXXXX
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDD----QGNEEEEPLAPLSEA 120
           XXXXXXXXXXXXXXXX +EKDLVLHGGVLPADR VD+QNDD      +EEE+PLAP+SE 
Sbjct: 61  XXXXXXXXXXXXXXXXXIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLF 172
           T YD+GN+KVTVTTSEV R++EIDPIDKPQ +  T+QLL KDKKH+LPITKKK F
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQAS--TSQLLAKDKKHSLPITKKKPF 173

[Close]
BLAST of CsaV3_4G028920 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.4 bits (529), Expect = 2.3e-50
Identity = 139/175 (79.43%), Postives = 155/175 (88.57%), Query Frame = 0 

Query: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60
           MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHK XXXXXXXXXXX
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDD----QGNEEEEPLAPLSEA 120
           XXXXXXXXXXXXXXXX  EK+LVLHGGVLPADR VD+QNDD      +EEE+PLAP+SE 
Sbjct: 61  XXXXXXXXXXXXXXXXXXEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLF 172
           TTYD+GN+KVTVTTSEV R++EIDPIDKPQ +  T+QLL KDKKH+LP+TKKK F
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQAS--TSQLLAKDKKHSLPVTKKKPF 173

[Close]
BLAST of CsaV3_4G028920 vs. NCBI nr
Match: XP_023003425.1 (ribosomal RNA-processing protein 17 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 8.6e-50
Identity = 138/175 (78.86%), Postives = 155/175 (88.57%), Query Frame = 0 

Query: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60
           MVKN+  EGG L QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHK XXXXXXXXXXX
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDD----QGNEEEEPLAPLSEA 120
           XXXXXXXXXXXXXXXX +EKDLVLHGGVLPADR VD+QNDD      +EEE+PLAP+SE 
Sbjct: 61  XXXXXXXXXXXXXXXXXIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLF 172
           TTYD+GN+KVTVTTSEV RE+EIDPIDKPQ +  T+QLL KDKKH+LPITKKK F
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQAS--TSQLLAKDKKHSLPITKKKPF 173

[Close]
BLAST of CsaV3_4G028920 vs. TAIR10
Match: AT1G11240.1 (Nucleolar protein 12 (InterPro:IPR019186))

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 75/142 (52.82%), Postives = 89/142 (62.68%), Query Frame = 0 

Query: 7   EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXXXXXXX 66
           EE G LA P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHK XXXXXXXXXXXXXXXX
Sbjct: 8   EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKXXXXXXXXXXXXXXXXX 67

Query: 67  XXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYDNGNVK 126
           XXXX       KLE +L++ G                              T YD G +K
Sbjct: 68  XXXXIEARKNRKLE-ELMVAGNGEDNXXXXXXXXXXXXXXXXXXXXXXXATTMYDTGELK 127

Query: 127 VTVTTSEVSREDEIDPIDKPQT 148
           VTVTTSE+SRE+E +PI K +T
Sbjct: 128 VTVTTSEISREEE-EPIRKEKT 147

[Close]
BLAST of CsaV3_4G028920 vs. TrEMBL
Match: tr|A0A0A0KYB4|A0A0A0KYB4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.8e-81
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60
           MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD 120
           XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD
Sbjct: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD 120

Query: 121 NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR 180
           NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR
Sbjct: 121 NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR 180

Query: 181 PKLRSKRDKKKGRKKK 197
           PKLRSKRDKKKGRKKK
Sbjct: 181 PKLRSKRDKKKGRKKK 196

[Close]
BLAST of CsaV3_4G028920 vs. TrEMBL
Match: tr|A0A1S3C1A3|A0A1S3C1A3_CUCME (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.0e-59
Identity = 167/196 (85.20%), Postives = 169/196 (86.22%), Query Frame = 0 

Query: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60
           MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD 120
           XXXXXXXXXXXXXXXX LEKDLVL+GGVLPADRAVD            PLAP SEA TYD
Sbjct: 61  XXXXXXXXXXXXXXXXXLEKDLVLYGGVLPADRAVDXXXXXXXXXXXXPLAPFSEARTYD 120

Query: 121 NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR 180
           NGNVKVTVTTSEVSRE EIDPIDKPQTA   AQLLGKDKKHNLPITKKKLFKKVAKQR R
Sbjct: 121 NGNVKVTVTTSEVSREGEIDPIDKPQTA--IAQLLGKDKKHNLPITKKKLFKKVAKQRSR 180

Query: 181 PKLRSKRDKKKGRKKK 197
           PKL       KGRKKK
Sbjct: 181 PKLXXXXXXXKGRKKK 194

[Close]
BLAST of CsaV3_4G028920 vs. TrEMBL
Match: tr|F6H7U1|F6H7U1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0181g00240 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.3e-34
Identity = 120/192 (62.50%), Postives = 146/192 (76.04%), Query Frame = 0 

Query: 7   EEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXXXXXXXX 66
           EEGG+   PHA+HIKKRALRNKALSVSFNEKDLRD+V GFHKR XXXXXXXXXXXXXXXX
Sbjct: 7   EEGGQPRPPHAKHIKKRALRNKALSVSFNEKDLRDFVGGFHKRKXXXXXXXXXXXXXXXX 66

Query: 67  XXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEE---EEPLAPLSEATTYDNGN 126
           XXXXXXXXXX  E++LV +GG   A  +  D+ DD+  +    +EP+A +S  T YDNG+
Sbjct: 67  XXXXXXXXXXXXERELVQYGGAPTATGSEPDECDDEHEQHDGVDEPIASVSGTTMYDNGD 126

Query: 127 VKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKL 186
            KV VTTSE+SRE+E    +K Q A   A ++G  KKHN+P++KKK FK+V + R +PKL
Sbjct: 127 TKVIVTTSEISREEENHLTEKTQGAAPPA-IVGSKKKHNVPVSKKKAFKRVVRHRSQPKL 186

Query: 187 RSKRDKKKGRKK 196
           + KRDKKKG KK
Sbjct: 187 QRKRDKKKGGKK 197

[Close]
BLAST of CsaV3_4G028920 vs. TrEMBL
Match: tr|B9HZ02|B9HZ02_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G043400v3 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 94/194 (48.45%), Postives = 120/194 (61.86%), Query Frame = 0 

Query: 2   VKNDGEEGGELAQPHAR--HIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXX 61
           +K + E+ G +  P  R  HIKKR L+NK +SVSFNEKDLRDYVTGFHKR  XXXXX   
Sbjct: 1   MKGEIEDNGAIQIPPTRAGHIKKRVLKNKGVSVSFNEKDLRDYVTGFHKRKKXXXXXAIK 60

Query: 62  XXXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTY 121
                            KLEK+L L+GG  PA    D+  +D  +EE EP+A +S  T Y
Sbjct: 61  QQEVKLRHKRIAARKQRKLEKELALNGGAPPAADESDNYGED--DEEIEPIASISGTTKY 120

Query: 122 DNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRG 181
           DNG+++VTVTTSE+SREDE    +K  T     +L   DK H L ++KK  FKKV K + 
Sbjct: 121 DNGDMQVTVTTSEISREDEDGHSEK--TQVTVPRLNEADKSHKLSVSKKNSFKKVLKHKS 180

Query: 182 RPKLRSKRDKKKGR 194
           R K ++KRD+KKG+
Sbjct: 181 RSKPQNKRDRKKGK 190

[Close]
BLAST of CsaV3_4G028920 vs. TrEMBL
Match: tr|A0A1Q3ATG0|A0A1Q3ATG0_CEPFO (Nop25 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_02386 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.2e-29
Identity = 116/195 (59.49%), Postives = 143/195 (73.33%), Query Frame = 0 

Query: 6   GEEGGELAQPH----ARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXXX 65
           G+   E+AQ H     RHI KRAL+NKALSVSFNEKDL+DYV GFHK XXXXXXXXXXXX
Sbjct: 3   GDVEEEVAQQHPSTRVRHINKRALKNKALSVSFNEKDLKDYVGGFHKXXXXXXXXXXXXX 62

Query: 66  XXXXXXXXXXXXXXXKLEKDLVLHGGVLP-ADRAVDDQNDDQGNEEEEPLAPLSEATTYD 125
           XXXXXXXXXXXXXXXKLEK+L L GGV P AD A D+  D + +E+ EP A ++  T Y+
Sbjct: 63  XXXXXXXXXXXXXXXKLEKELALCGGVPPAADTAPDEATDCEDDEKGEPTASVAGTTMYE 122

Query: 126 NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR 185
           NGN++VTVTTSE+SRE++  P +K        + +G DK HN+P++K KL KK+ K +  
Sbjct: 123 NGNLQVTVTTSEISREEDTLPCEKIHAP--VPRSIGADKSHNVPVSKTKLLKKIVKHKSL 182

Query: 186 PKLRSKRDKKKGRKK 196
           PK  SKRDK+K + K
Sbjct: 183 PKPLSKRDKRKMKNK 195

The following BLAST results are available for this feature:
BLAST of CsaV3_4G028920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653832.14.2e-81100.00PREDICTED: ribosomal RNA-processing protein 17 [Cucumis sativus] >KGN54640.1 hyp... [more]
XP_008455785.11.6e-5985.20PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo][more]
XP_022926799.11.3e-5080.00ribosomal RNA-processing protein 17 [Cucurbita moschata][more]
XP_023517913.12.3e-5079.43ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo][more]
XP_023003425.18.6e-5078.86ribosomal RNA-processing protein 17 [Cucurbita maxima][more]
BLAST of CsaV3_4G028920 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11240.11.6e-1352.82Nucleolar protein 12 (InterPro:IPR019186)[more]
BLAST of CsaV3_4G028920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G028920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYB4|A0A0A0KYB4_CUCSA2.8e-81100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=4 SV=1[more]
tr|A0A1S3C1A3|A0A1S3C1A3_CUCME1.0e-5985.20ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=4... [more]
tr|F6H7U1|F6H7U1_VITVI3.3e-3462.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0181g00240 PE=4 SV=... [more]
tr|B9HZ02|B9HZ02_POPTR2.5e-2948.45Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G043400v3 PE=... [more]
tr|A0A1Q3ATG0|A0A1Q3ATG0_CEPFO3.2e-2959.49Nop25 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_02... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019186Nucleolar_protein_12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051276 chromosome organization
biological_process GO:0006310 DNA recombination
biological_process GO:0010467 gene expression
biological_process GO:0007127 meiosis I
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0044710 single-organism metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G028920.1CsaV3_4G028920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 47..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..196
IPR019186Nucleolar protein 12PFAMPF09805Nop25coord: 22..151
e-value: 5.4E-18
score: 65.7
IPR019186Nucleolar protein 12PANTHERPTHR14577UNCHARACTERIZEDcoord: 14..137

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G028920CSPI04G18550Wild cucumber (PI 183967)cpicucB212
CsaV3_4G028920CsGy4G017630Cucumber (Gy14) v2cgybcucB171
CsaV3_4G028920MELO3C019183Melon (DHL92) v3.5.1cucmeB337
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G028920Cucumber (Gy14) v1cgycucB411
CsaV3_4G028920Bottle gourd (USVL1VR-Ls)cuclsiB273
CsaV3_4G028920Melon (DHL92) v3.6.1cucmedB330
CsaV3_4G028920Watermelon (Charleston Gray)cucwcgB314
CsaV3_4G028920Watermelon (97103) v1cucwmB352
CsaV3_4G028920Watermelon (97103) v2cucwmbB301