CsaV3_4G028810 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G028810
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr4 : 18290993 .. 18292611 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAGAAGGAAACATTGAGGGGGCACTGAAAGCTAGAATGCAGCAAGGAGAAGGTGGATTAGATCAGAAGAAGTGGAAAGGAAAGAAGGGAAGTGGAAAAGGTAGCATATAGTATCTTGCACAGGATGTAGGTAGTGCATGCAAGCACTGTGGGAAGCAAAATAATCCACAGTTTAGATGCTGAAGAAGGCCAAATGTGAAGTGTAGAAGGTGTCATTTATTGGGGCACATTGAACAATTCCACAAGGAAGTAAAAACTCAACAGAAAGGAGGAGCACATACTACACATACTACAGTACAACAACAAGGAGATCAACTCTTTGTGGCTACTTGTTTCTCATCAACCACTCAATGTGATGGTTGGTTGGTTGATAGTGGGTGTACCAATCACATGACAAGTGACAAAAAGTTGTTCAAGGACCTTGACATGTCATTCGAGTCAAGGGTGAAATAGAAAACGGTGCATATTTAGAAGTAAAGGGGAAGAGCACAGTGTCAACAGAGAGTTGTGATGGAACCAAGTTGATTACTGAAGTGTTGTTTGTCCTTGAGATTGATCAAAACTTATTAAGCGTTAGTCAACTAGTAGAGAAGAGATTCAAAGTGTTGTTTTAAGAAGGAAAATGTCTAATTTATGATTCCAATAGGAACGAGCTCTTCAAAATAAAGATGCAACACAAGAGCTTTTCGTTGGATCCACTTGAAGAAAAGCAGGTAGCTTTCAAGTGTCAAGTGAATGACACTTAGTTATGGCACAAGAGGTTGGGGCATTTTCATTAGAAAATGTTGTAGTATTTGCAGAAAAATGAGAGGGCAGTAGGAATACCAGTTCTTGGGAAAACTGAAAAATAAACTGTAGAGCTTGTGGAAAGAAAACAAGGCTACCATTCAAGAAGTCACAATGGAAAGCAACTAAGAAGCTACAGCTCATCCAACTCTGACTTGTGTGAACCTCAACCAACTCCATCACTAAATGGTAACAAGTATTTTATTATCTTTATTGATGATTATACCAAAATGTGTTGGATATATTTCATGAAGCACAAGTCTGAAGTAGCTAAAGTGCTTTTGAAGTTTAAAAGTTGGATTGAGAATCAAAGCGACTGTAAGGTTCAGGTGGTGATAATTGATAATGGGATTGAATATATGTCGCAAAATTTCAATTCCATCTGTGAAGGAGCTGGGATAGAGCATCAACTCATTACTCCATATTCTCCACAACAAAGTGGAGTCAGTGAGGGGAAGAACAAGAGTATTATAGAGATGACAAGTTGTTTATTGCATGAGAAGGGCTTGCCAAAGAAATTTTGGGCTGAAGCAACATTCACAACAATCTTTCTATTAAATAGACTACCTACAAGGGTATTGGAGAAGAAGACACCTTATGAAGTTTGGTTTGATATTAAACCAAAACTGACAAATTTGAAGGTCAGTTGTTTGTGTTTTTTTCATGTTCCACAGGCGAAGAGAGACAAGTTGAGTGAGAAGGCTGAACCATTAATTTTTGTAAGCTATAGCAGGTTATCCAAAGCCTCCAAGATCTATCAACCTCATACAGAGAAGATGGTGATTAGTAGAGATGTCCAGTTTTTGGCGGATGAGGAGTGGGACTAG

mRNA sequence

ATGAGGCAAGAAGGAAACATTGAGGGGGCACTGAAAGCTAGAATGCAGCAAGGAGAAGGTGGATTAGATCAGAAGAAGTGGAAAGGAAAGAAGGGAAGTGGAAAAGGAGCTGGGATAGAGCATCAACTCATTACTCCATATTCTCCACAACAAAGTGGAGTCAGTGAGGGGAAGAACAAGAGTATTATAGAGATGACAAGTTGTTTATTGCATGAGAAGGGCTTGCCAAAGAAATTTTGGGCTGAAGCAACATTCACAACAATCTTTCTATTAAATAGACTACCTACAAGGGCGAAGAGAGACAAGTTGAGTGAGAAGGCTGAACCATTAATTTTTGTAAGCTATAGCAGGTTATCCAAAGCCTCCAAGATCTATCAACCTCATACAGAGAAGATGGTGATTAGTAGAGATGTCCAGTTTTTGGCGGATGAGGAGTGGGACTAG

Coding sequence (CDS)

ATGAGGCAAGAAGGAAACATTGAGGGGGCACTGAAAGCTAGAATGCAGCAAGGAGAAGGTGGATTAGATCAGAAGAAGTGGAAAGGAAAGAAGGGAAGTGGAAAAGGAGCTGGGATAGAGCATCAACTCATTACTCCATATTCTCCACAACAAAGTGGAGTCAGTGAGGGGAAGAACAAGAGTATTATAGAGATGACAAGTTGTTTATTGCATGAGAAGGGCTTGCCAAAGAAATTTTGGGCTGAAGCAACATTCACAACAATCTTTCTATTAAATAGACTACCTACAAGGGCGAAGAGAGACAAGTTGAGTGAGAAGGCTGAACCATTAATTTTTGTAAGCTATAGCAGGTTATCCAAAGCCTCCAAGATCTATCAACCTCATACAGAGAAGATGGTGATTAGTAGAGATGTCCAGTTTTTGGCGGATGAGGAGTGGGACTAG

Protein sequence

MRQEGNIEGALKARMQQGEGGLDQKKWKGKKGSGKGAGIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPTRAKRDKLSEKAEPLIFVSYSRLSKASKIYQPHTEKMVISRDVQFLADEEWD

Homology

[Close]

BLAST of CsaV3_4G028810 vs. NCBI nr
Match: KYP36206.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 150.2 bits (378), Expect = 5.5e-33
Identity = 74/144 (51.39%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 37  AGIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPT 96
           AGIEHQL TPY+PQQ+GVSE KN++I+EM  C+LHEKGLPK++WAEA  T +FLLNRLPT
Sbjct: 571 AGIEHQLTTPYNPQQNGVSERKNRTIMEMVRCMLHEKGLPKEYWAEAANTAVFLLNRLPT 630

Query: 97  RA----------------------------------KRDKLSEKAEPLIFVSYSRLSKAS 147
           +A                                  KRDKL +KAEP +FV YS +SKA 
Sbjct: 631 KAVDGKTPFEVWYGYKPFLKNFKVFGCLYFTYVPQIKRDKLDKKAEPGVFVGYSSVSKAY 690

[Close]

BLAST of CsaV3_4G028810 vs. NCBI nr
Match: XP_021609063.1 (uncharacterized protein LOC110612592 [Manihot esculenta])

HSP 1 Score: 144.4 bits (363), Expect = 3.0e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 37  AGIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPT 96
           A IEHQL TPY+PQQ+GVSE KN++I+EMT CLLHEK LPKKFWAEA  T IFLLNRLPT
Sbjct: 376 ARIEHQLTTPYTPQQNGVSERKNRTIMEMTRCLLHEKNLPKKFWAEAANTVIFLLNRLPT 435

Query: 97  RA----------------------------------KRDKLSEKAEPLIFVSYSRLSKAS 148
           +A                                  KRDKL +K+EP IF+ YS +SKA 
Sbjct: 436 KALQKQTPYKAWYGHKPSIINLKVFGCFCFSYIPQVKRDKLDKKSEPGIFIGYSSVSKAY 495

[Close]

BLAST of CsaV3_4G028810 vs. NCBI nr
Match: KYP56919.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 143.3 bits (360), Expect = 6.7e-31
Identity = 72/142 (50.70%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 39  IEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPTRA 98
           IEHQL TPY+PQQ+GVSE KN++I+EM  C+LHEKGLPK++WAEA  T +FLLNRLPT+A
Sbjct: 8   IEHQLTTPYTPQQNGVSERKNRTIMEMVRCMLHEKGLPKEYWAEAANTAVFLLNRLPTKA 67

Query: 99  ----------------------------------KRDKLSEKAEPLIFVSYSRLSKASKI 147
                                             KRDKL +KAEP +FV YS +SK   I
Sbjct: 68  VDGKTLFEVWYGYKPFLKNFKVFGCLCFTYVPQIKRDKLDKKAEPGVFVGYSSVSKDYTI 127

[Close]

BLAST of CsaV3_4G028810 vs. NCBI nr
Match: CAN64779.1 (hypothetical protein VITISV_043230 [Vitis vinifera])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 80/175 (45.71%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 8   EGALKARMQ--QGEGGLDQKKWKGKKGSGKGAGIEHQLITPYSPQQSGVSEGKNKSIIEM 67
           E   K +MQ  + + G +    K  K   + AGIEHQL TPY+PQQ+GV E KN++++EM
Sbjct: 389 ENQSKCKMQVIRSDNGXEYTSEKFNKFC-EDAGIEHQLTTPYTPQQNGVVERKNRTLMEM 448

Query: 68  TSCLLHEKGLPKKFWAEATFTTIFLLNRLPTRA--------------------------- 127
           T CLLHEKGLPKKFWAEA  T++FLLNRLPT+A                           
Sbjct: 449 TRCLLHEKGLPKKFWAEAAHTSVFLLNRLPTKALQQXTPFEAWYGYKPRLQNLKTFGCLC 508

Query: 128 -------KRDKLSEKAEPLIFVSYSRLSKASKIYQPHTEKMVISRDVQFLADEEW 147
                  KRDKL +KAE  IF+ YS +SKA +IY P   K+++SRDV+F   E W
Sbjct: 509 FSYIPHVKRDKLDKKAEAXIFIGYSSISKAYRIYLPENNKVIVSRDVKFFESESW 562

[Close]

BLAST of CsaV3_4G028810 vs. NCBI nr
Match: XP_020089023.1 (uncharacterized protein LOC109710699 [Ananas comosus])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 80/140 (57.14%), Postives = 96/140 (68.57%), Query Frame = 0


Query: 6   NIEGALKARMQQGEGGLDQKKWKGKKGSGKGAGIEHQLITPYSPQQSGVSEGKNKSIIEM 65
           NI+ +LK++++ G G   + K KG       AG      T     Q+GVSE KN+ I+EM
Sbjct: 338 NIDKSLKSKVRIGNGEYLEVKGKGTVAIESCAG------TKLVSDQNGVSERKNRIIMEM 397

Query: 66  TSCLLHEKGLPKKFWAEATFTTIFLLNRLPTRAKRDKLSEKAEPLIFVSYSRLSKASKIY 125
           T CLL EK LPK+FWAEA  T IFLLNRLPTR KRDKL EKAEP IFV YS +SKA +IY
Sbjct: 398 TRCLLQEKNLPKEFWAEAANTAIFLLNRLPTRVKRDKLGEKAEPGIFVGYSLVSKAYRIY 457

Query: 126 QPHTEKMVISRDVQFLADEE 146
           QP T K++ SRDVQFL DE+
Sbjct: 458 QPQTGKVITSRDVQFLEDEQ 471

[Close]

BLAST of CsaV3_4G028810 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 41/141 (29.08%), Postives = 63/141 (44.68%), Query Frame = 0


Query: 38  GIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPT- 97
           GI H+   P +PQ +GV+E  N++I+E    +L    LPK FW EA  T  +L+NR P+ 
Sbjct: 568 GIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSV 627

Query: 98  ---------------------------------RAKRDKLSEKAEPLIFVSYSRLSKASK 145
                                            + +R KL +K+ P IF+ Y       +
Sbjct: 628 PLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYR 687

[Close]

BLAST of CsaV3_4G028810 vs. Swiss-Prot
Match: sp|P04146|COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 38/136 (27.94%), Postives = 58/136 (42.65%), Query Frame = 0


Query: 38  GIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPTR 97
           GI + L  P++PQ +GVSE   ++I E    ++    L K FW EA  T  +L+NR+P+R
Sbjct: 568 GISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSR 627

Query: 98  A-----------------------------------KRDKLSEKAEPLIFVSYSRLSKAS 139
           A                                   K+ K  +K+   IFV Y       
Sbjct: 628 ALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYE--PNGF 687

[Close]

BLAST of CsaV3_4G028810 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 36/137 (26.28%), Postives = 57/137 (41.61%), Query Frame = 0


Query: 38  GIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPTR 97
           GI H    P++P+ +G+SE K++ I+E    LL    +PK +W  A    ++L+NRLPT 
Sbjct: 608 GISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTP 667

Query: 98  A----------------------------------KRDKLSEKAEPLIFVSYSRLSKASK 141
                                               + KL +K+   +F+ YS    A  
Sbjct: 668 LLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYL 727

[Close]

BLAST of CsaV3_4G028810 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 38/137 (27.74%), Postives = 57/137 (41.61%), Query Frame = 0


Query: 38  GIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPTR 97
           GI H    P++P+ +G+SE K++ I+EM   LL    +PK +W  A    ++L+NRLPT 
Sbjct: 587 GISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTP 646

Query: 98  A----------------------------------KRDKLSEKAEPLIFVSYSRLSKASK 141
                                               R KL +K++   F+ YS    A  
Sbjct: 647 LLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYL 706

[Close]

BLAST of CsaV3_4G028810 vs. TrEMBL
Match: tr|A0A151R0Z6|A0A151R0Z6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_042684 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.6e-33
Identity = 74/144 (51.39%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 37  AGIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPT 96
           AGIEHQL TPY+PQQ+GVSE KN++I+EM  C+LHEKGLPK++WAEA  T +FLLNRLPT
Sbjct: 571 AGIEHQLTTPYNPQQNGVSERKNRTIMEMVRCMLHEKGLPKEYWAEAANTAVFLLNRLPT 630

Query: 97  RA----------------------------------KRDKLSEKAEPLIFVSYSRLSKAS 147
           +A                                  KRDKL +KAEP +FV YS +SKA 
Sbjct: 631 KAVDGKTPFEVWYGYKPFLKNFKVFGCLYFTYVPQIKRDKLDKKAEPGVFVGYSSVSKAY 690

[Close]

BLAST of CsaV3_4G028810 vs. TrEMBL
Match: tr|A0A151SQ95|A0A151SQ95_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_003170 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-31
Identity = 72/142 (50.70%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 39  IEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPTRA 98
           IEHQL TPY+PQQ+GVSE KN++I+EM  C+LHEKGLPK++WAEA  T +FLLNRLPT+A
Sbjct: 8   IEHQLTTPYTPQQNGVSERKNRTIMEMVRCMLHEKGLPKEYWAEAANTAVFLLNRLPTKA 67

Query: 99  ----------------------------------KRDKLSEKAEPLIFVSYSRLSKASKI 147
                                             KRDKL +KAEP +FV YS +SK   I
Sbjct: 68  VDGKTLFEVWYGYKPFLKNFKVFGCLCFTYVPQIKRDKLDKKAEPGVFVGYSSVSKDYTI 127

[Close]

BLAST of CsaV3_4G028810 vs. TrEMBL
Match: tr|A5APY5|A5APY5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043230 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.6e-31
Identity = 80/175 (45.71%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 8   EGALKARMQ--QGEGGLDQKKWKGKKGSGKGAGIEHQLITPYSPQQSGVSEGKNKSIIEM 67
           E   K +MQ  + + G +    K  K   + AGIEHQL TPY+PQQ+GV E KN++++EM
Sbjct: 389 ENQSKCKMQVIRSDNGXEYTSEKFNKFC-EDAGIEHQLTTPYTPQQNGVVERKNRTLMEM 448

Query: 68  TSCLLHEKGLPKKFWAEATFTTIFLLNRLPTRA--------------------------- 127
           T CLLHEKGLPKKFWAEA  T++FLLNRLPT+A                           
Sbjct: 449 TRCLLHEKGLPKKFWAEAAHTSVFLLNRLPTKALQQXTPFEAWYGYKPRLQNLKTFGCLC 508

Query: 128 -------KRDKLSEKAEPLIFVSYSRLSKASKIYQPHTEKMVISRDVQFLADEEW 147
                  KRDKL +KAE  IF+ YS +SKA +IY P   K+++SRDV+F   E W
Sbjct: 509 FSYIPHVKRDKLDKKAEAXIFIGYSSISKAYRIYLPENNKVIVSRDVKFFESESW 562

[Close]

BLAST of CsaV3_4G028810 vs. TrEMBL
Match: tr|A0A2K3NH55|A0A2K3NH55_TRIPR (Putative copia-like retrotransposable element OS=Trifolium pratense OX=57577 GN=L195_g025685 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 71/144 (49.31%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 37  AGIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPT 96
           AGIEHQL  PY+PQQ+GVSE KN+SI++M  C+LH+K LPKK WAEA  T +F+ NRLPT
Sbjct: 598 AGIEHQLTAPYTPQQNGVSERKNRSIMDMVRCMLHQKELPKKLWAEAASTAVFIQNRLPT 657

Query: 97  RA----------------------------------KRDKLSEKAEPLIFVSYSRLSKAS 147
           RA                                  KRDKL +KAEP IF+ YS +SKA 
Sbjct: 658 RALQNQTPFEAWFGFKPSLDFFKVFGCLCYSHVPQVKRDKLDKKAEPGIFIGYSTISKAY 717

[Close]

BLAST of CsaV3_4G028810 vs. TrEMBL
Match: tr|A0A2K3NI74|A0A2K3NI74_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g026067 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.9e-30
Identity = 70/144 (48.61%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 37  AGIEHQLITPYSPQQSGVSEGKNKSIIEMTSCLLHEKGLPKKFWAEATFTTIFLLNRLPT 96
           AGIEHQL  PY+PQQ+GV E KN++I+EM  C+LH+KGLPK+FWAEA  T +FLLNRLPT
Sbjct: 606 AGIEHQLTAPYTPQQNGVVERKNRTIMEMARCMLHDKGLPKEFWAEAANTAVFLLNRLPT 665

Query: 97  RA----------------------------------KRDKLSEKAEPLIFVSYSRLSKAS 147
           +A                                  KRDKL +KAEP IFV YS ++KA 
Sbjct: 666 KAVQKKTPFEAWHGSKPKLINLKTFGCLCFSYIHQVKRDKLDKKAEPGIFVGYSLIAKAY 725

The following BLAST results are available for this feature:

BLAST of CsaV3_4G028810 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP36206.1	5.5e-33	51.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
XP_021609063.1	3.0e-31	52.41	uncharacterized protein LOC110612592 [Manihot esculenta]	[more]
KYP56919.1	6.7e-31	50.70	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
CAN64779.1	1.1e-30	45.71	hypothetical protein VITISV_043230 [Vitis vinifera]	[more]
XP_020089023.1	1.1e-30	57.14	uncharacterized protein LOC109710699 [Ananas comosus]	[more]

BLAST of CsaV3_4G028810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G028810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10978\|POLX_TOBAC	1.1e-11	29.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
sp\|P04146\|COPIA_DROME	2.4e-08	27.94	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
sp\|Q94HW2\|POLR1_ARATH	2.4e-08	26.28	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
sp\|Q9ZT94\|POLR2_ARATH	2.4e-08	27.74	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_4G028810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A151R0Z6\|A0A151R0Z6_CAJCA	3.6e-33	51.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
tr\|A0A151SQ95\|A0A151SQ95_CAJCA	4.4e-31	50.70	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
tr\|A5APY5\|A5APY5_VITVI	7.6e-31	45.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043230 PE=4 SV=1	[more]
tr\|A0A2K3NH55\|A0A2K3NH55_TRIPR	1.7e-30	49.31	Putative copia-like retrotransposable element OS=Trifolium pratense OX=57577 GN=...	[more]
tr\|A0A2K3NI74\|A0A2K3NI74_TRIPR	4.9e-30	48.61	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g02606...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G028810.1	CsaV3_4G028810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 33..108 e-value: 9.5E-10 score: 40.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..35
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 37..98

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G028810	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G028810	Cucumber (Gy14) v1	cgycucB411
CsaV3_4G028810	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G028810	Bottle gourd (USVL1VR-Ls)	cuclsiB329
CsaV3_4G028810	Bottle gourd (USVL1VR-Ls)	cuclsiB273
CsaV3_4G028810	Melon (DHL92) v3.5.1	cucmeB298
CsaV3_4G028810	Melon (DHL92) v3.6.1	cucmedB290
CsaV3_4G028810	Watermelon (Charleston Gray)	cucwcgB314
CsaV3_4G028810	Watermelon (Charleston Gray)	cucwcgB341
CsaV3_4G028810	Watermelon (97103) v1	cucwmB329
CsaV3_4G028810	Watermelon (97103) v1	cucwmB352
CsaV3_4G028810	Watermelon (97103) v2	cucwmbB301
CsaV3_4G028810	Wax gourd	cucwgoB421