CsaV3_4G028520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G028520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionproline-rich receptor-like protein kinase PERK2
Locationchr4 : 17907135 .. 17911976 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTTCAAGGTTCTTGATCATTGCCTTTACGGCTACTTTGGCTCTCTCAAGCATCAATTTCGGCCATGCTGCTCGCCATCTTTCGCAAACCACTCCGCCCTTGGTGCCAAATCTTCCAGCAATTCCAACTCTGATACCGCCATTGCCTGGCTTGCCAAACCCTACTCTTCCAAAGTTACCACAACCGACATTACCGAAGATTAATTTTCCTCCACTTCCAATCGGGCTAGCGTTGCCACCGCTTCCGACAATGACACTTCCAAAGTTTCCACCAATCCCTACCATTCCAATTTCATTTCCTTCCATCCCATTTTTGTCCCCTCCTCCTGCGACATCTTCTTCTCCATAAACTTGGTTTGGTTATTATTTAACTTATGCAGCCCCAATTGTTGTTGGTTAATTAGTGTAAGGGTGAAGTTGTAATGTTTTATCTATAATTTATCTATAACTTATAACTGTGTGTTTTAATTTCAATATTTATGTCTTTTGTAAGATTGAGGTTCAAACCTCCATGGACTATCATATTACTGTTCTATTTGATCAAGTCTATCTTGTACTACCAATACGACAAACGGTTCTTAATTTTGATTTTTAATAAATTTTGTCTCGACCTCTCGTTTCCATCGAGATCACCACCACGTAGTGGTGGATCTAGTAAATGCAAGAAGTGGACCTTGAAAGTAGGTACAACGAGCGTTAAAATTTTTTTTACCACCGGCCTAACTTCTAAAATTGTTAGAGTTCATTTTTTTTTATACATATATGTAATATAAAAATAATATAAAGTAGAGAGGTCCCTCTAGATCTATACTAAATCCTAAAGACGTCTATGGGACGGGGTGGGGCTGGGATGACACTCTCTATCCCCACCCTCGTCCCGTTGTTGATCCCCCCAAATTTGTGTGCAAGGAATGGGGCAAGGATTCCCCACAGGGATCGGGTTCTTCACGTGGAAATAGTGTCGGGGAATATCCCTGTCTTCCAATTTTCATCAAGAAAAAAATACTCCCCACTCCCTCCACATTTCTCATGAATTCAAAGTTTTCCGACTCGTTTGAGGTGGATCCCCACCTAGCCTTGACCCTTGGCTTAAATGGACACCTCTAGGCTTAAATGGACACCTCTAGTTGGTGCCATCCATGTTTCAATATTTATGCAAGAATAAAGTTTTAAAATGTTGATATCGTTAGAAATGTGTCGAGGTCTCAACTGTACGAAATTATCGATAGATATATAACTATGATATTGACATTGATGGATTTTTCCTAAATATATAGAAAAAGATTAAAGAAATAATATTTGTTGTAAAGTGATCGCGACATAGAGCGGTCGATGTCCTTGTTTATTTAATCTTAAAAAATAAATAGGTTCGGAGTTGCCACCAAGCATATTAAGGTGTGATTGGTCACCTAAAGATTTAATAAAATGGCTTACATGAATTCTTGTTTAGGTTCGAGAGTCAGTTATGTGTAGGAGGTGTTAGCACCTTACAACACCCATCAAAATGGAAAATATGATCTAATAAATAAATTATGTCACATCATCACAGTAAATATGATCCAATAAATAAATGGGCTCAAGCCCAAGTTCAAGAAGTGGATGGGCCCAAGTCCAAGCCCAATTTGCAAATAGGCTCAAGTCCAAGCCCAACAAGCAAATGGGCTAGAGTCTAAGCCCACCAAGCAAATGAGCTCAAGCCCACCTAAAGCCCATAAAATTTCTCTATAAATAGAGACCCTTGCCATTCATTTTAGAGGGTCTTTAGTTGAATGAATAATTAAAGCTCTGAAGTACTGAAACTCTGAAGAATTGAAGATTAAAACTTCTATAAAGCTCTCAAGACGTGTAAGTTCTTATCAACTTCGAGATCATCATCTTCTGAAAGTTTGAAGACTTGGAAGATCAAACTTTTCTTGAATTCCAGAAGACTGAAGCTCAAATAGACTTGCAACTACAACATCCTAAAGACCGAAGATCAAGAAGTTCTAAGTTTTTAACTTGTATTCGAGGGAAAGCATCCAAGGAGTAAATACTAGAGATTGTATTCACAATATTCATCAATATAACAAAGTTCAATTTTACGAAATACGTTTCTTCGAAATCTCGTGTGAACACTTATTATTGCGAAAGTCCTCTCCACAAACTAACACGAGTCATTTCTGTATGTTTTGTCTTCACTCATATGCATTATAGGAATGTTTCCAGAATGCCACCCAACTATAATTGCTCTAAGCTAAGCACACTTAACTTTTAACTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCAGCTTGTTGGTATAGAAATTAACTTTTATTTCTTTTAAGTCTTTCTTAACATTACTTTCATGTCCTCAAGATATATCCCTCTCATTAGAATGTGATATCGTTTCATTCATGTCTCTCTCCTAATCTCGGACGTTACACTGTTAAAGTGGAGTGAAGTTACAATTACATCCAAATAATTCAGAGGTCATGCATTTTCATTTTTTTTTTTAAAAAACACTATAATATTTAATTATTTAAAAGAAGTGAAGAAATCGAAAAAACCGACTGATCGCCAAAATCGGTTCAAAGTCGGTTTTGTTGGTCAGAATCATAGTCGAAATCAGTTCTGCCATTCCCATACCAACTTGTGGTCGGTTGGAGTCGATTTGGCTAGAAACCGACTCCGAACGATATCGTTCATCACCTCTAGTTTCTTTATAATTCTTTAAAAAAATTCGATAAACTTTGTTATGTTTATAATTGTTCTATCACGACATAATTTTATTGTCACATAATCCATATTTCCAACTTTTATATTGTCAATATATTTCATATATTATGATAGTTTCTTTAAATCTTGTCATTACACATAGTTTTCACCATCAACTAATTCTCTTTTAACATAAAATTCATATGCATGTAAATAAGAAGTTTCATATATATCAATAACATAGATAGCATTTTTATAAAGAAACTAAGCTCAATGAATCTATCGAATATCCCCAAACGGACAAATATAAGCAAGTTAGTAACTAAAACCTTGGTAACCTTTTTTAAAAGAAACTAAATACAACAAGATATTATCGAGAATATTATACCGATCGTGTACCAAGCCTAAACAATCTTGGTACATGATCTTGTAACAATTCTAAACGAAGTTGGTAAACAATCTTCGTACATGATCATGAACATGGATCGTTTAGATATTGGTACACGATCGCTTACTAAGATCTAAATAATCGATCGTGTACCAATTTGTAAATGATCTTGGTTCACGATGTACGAAGATCATTTATATTTAGTACATAATCGTGTACCAATATCGTTTAGATTTGGTACACGATCGTTTAGTTTTATTAGAGAAAATATATGAGAGATGACGAAGAAAAGGAAATTCTGGAGGAGGAAATGAAGAAATCACGAACAAGAACAAATGGAAATATGGACATAAGAAGTAATAATATGAAGAAATTAATATTATGAAAAGGAGATGAAAAAAACACAAAGAAGTGAAAAATCATCCGCAATGTCAAAGACAATGCTGAAATTTATGAAAATATTTTATCGACTTTTTAATTTTTTACACTAGCCATAAATATTTTGGTGTTTTATATATTTATGAAAATTAACCAAAATGAAAACTACTTATTCTAATTTGAAAGAATTTGATTTGGTTTTTTAAAACCTAGATAACAAACCAATAGATTTATTAGTGGGTATAAAGCTCTTAAATAGATTTTAAAAAACTAAACAACTTTTTACAATTTTTGGAATAAGATAAAAACTCCTTGAGAGCGGATAAAAAAGAAACAACTAATAAATGTCTCGTCTTTGAAAGATAAAAACATCAATCATAATACAATTTATTTTTCCAACATCGTCAAATAAATTAATAAAAATTTATATCAAATTACAAAAACTTTCGAAGAAAAAAACAACTCATGACACTTATTTTTTTGCATATTGCGAATATGACAAAATTAATAATATCAGACGACTATCAAACGGTAATCATTAGAATATCGAAAGGCTATCAGACGATAACTATAAAGTTATCGACTTTTAATTTTGCTACTTCTGCAATTTAGAAAATGTAGTGTTATAAACCTTATTATCGTTATTTTTTTACTATTTTTACAAGGCCCCTAAATTAATTTGCAAAATCGAATGTAAAATAAATTAAAATAACATTACTTTGAGAAAAAGAAATCAAACACTTTTCTTGATCTAACTTAATAACTGCTTTCGTGATCTAATTTCCAAGTTCATGGTATTTTTGTCATTTAGTTCTTGTGAACTAATTCTTCATGACAACAATTAAACAAAATTTTTTTGTTTTCAATATCATACCAATGGCGGCCAGAACACATCGACCATCATCAACAAAATTATCCCAGACCGAAGCTCCAACCTATTTAAACATATCACGAGGCCTTTCAATGTATCTCATCTCTTCATAACAAAAACTTCAAATCATCTTATCAAAGGGAAAAAAAATGGCTACTTCAAGGTTCTTGATCATTGCCTTTACGGCTACTTTGGCTCTCTCAAGCATCAATTTCGGCCATGCTGCTCGCCATCTTTCGCAAACCACTCCGCCCTTGGTGCCAAATCTTCCAGCAATTCCAACTCTGATACCGCCATTGCCTGGCTTGCCAAACCCTACTCTTCCAAAGTTACCACAACCGACATTACCGAAGATTAATTTTCCTCCACTTCCAATCGGGCTAGCGTTGCCACCGCTTCCGACAATGACACTTCCAAAGTTTCCACCAATCCCTACCATTCCAATTTCATTTCCTTCCATCCCATTTTTGTCCCCTCCTCCTGCGACATCTTCTTCCCCATAA

mRNA sequence

ATGGCTACTTCAAGGTTCTTGATCATTGCCTTTACGGCTACTTTGGCTCTCTCAAGCATCAATTTCGGCCATGCTGCTCGCCATCTTTCGCAAACCACTCCGCCCTTGGTGCCAAATCTTCCAGCAATTCCAACTCTGATACCGCCATTGCCTGGCTTGCCAAACCCTACTCTTCCAAAGTTACCACAACCGACATTACCGAAGATTAATTTTCCTCCACTTCCAATCGGGCTAGCGTTGCCACCGCTTCCGACAATGACACTTCCAAAGTTCTTGATCATTGCCTTTACGGCTACTTTGGCTCTCTCAAGCATCAATTTCGGCCATGCTGCTCGCCATCTTTCGCAAACCACTCCGCCCTTGGTGCCAAATCTTCCAGCAATTCCAACTCTGATACCGCCATTGCCTGGCTTGCCAAACCCTACTCTTCCAAAGTTACCACAACCGACATTACCGAAGATTAATTTTCCTCCACTTCCAATCGGGCTAGCGTTGCCACCGCTTCCGACAATGACACTTCCAAAGTTTCCACCAATCCCTACCATTCCAATTTCATTTCCTTCCATCCCATTTTTGTCCCCTCCTCCTGCGACATCTTCTTCCCCATAA

Coding sequence (CDS)

ATGGCTACTTCAAGGTTCTTGATCATTGCCTTTACGGCTACTTTGGCTCTCTCAAGCATCAATTTCGGCCATGCTGCTCGCCATCTTTCGCAAACCACTCCGCCCTTGGTGCCAAATCTTCCAGCAATTCCAACTCTGATACCGCCATTGCCTGGCTTGCCAAACCCTACTCTTCCAAAGTTACCACAACCGACATTACCGAAGATTAATTTTCCTCCACTTCCAATCGGGCTAGCGTTGCCACCGCTTCCGACAATGACACTTCCAAAGTTCTTGATCATTGCCTTTACGGCTACTTTGGCTCTCTCAAGCATCAATTTCGGCCATGCTGCTCGCCATCTTTCGCAAACCACTCCGCCCTTGGTGCCAAATCTTCCAGCAATTCCAACTCTGATACCGCCATTGCCTGGCTTGCCAAACCCTACTCTTCCAAAGTTACCACAACCGACATTACCGAAGATTAATTTTCCTCCACTTCCAATCGGGCTAGCGTTGCCACCGCTTCCGACAATGACACTTCCAAAGTTTCCACCAATCCCTACCATTCCAATTTCATTTCCTTCCATCCCATTTTTGTCCCCTCCTCCTGCGACATCTTCTTCCCCATAA

Protein sequence

MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPTLIPPLPGLPNPTLPKLPQPTLPKINFPPLPIGLALPPLPTMTLPKFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPTLIPPLPGLPNPTLPKLPQPTLPKINFPPLPIGLALPPLPTMTLPKFPPIPTIPISFPSIPFLSPPPATSSSP
Homology
[Close]
BLAST of CsaV3_4G028520 vs. NCBI nr
Match: KGN54597.1 (hypothetical protein Csa_4G374890 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPT 46
          MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPT
Sbjct: 1  MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPT 45

[Close]
BLAST of CsaV3_4G028520 vs. NCBI nr
Match: XP_008462893.1 (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-10
Identity = 95/112 (84.82%), Postives = 95/112 (84.82%), Query Frame = 0 

Query: 91  FLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPTXXXXXXXXPNXXXXXXXXXX 150
           FLIIAF ATLALSSINFG AARHL QTTPPLVPNLPAIPT        PNXXXXXXXXXX
Sbjct: 6   FLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPTGIPPFPALPNXXXXXXXXXX 65

Query: 151 XXXXXXXXXXIGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPPPATSSSP 203
           XXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXX  LSPPPATSSSP
Sbjct: 66  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFLSPPPATSSSP 117

[Close]
BLAST of CsaV3_4G028520 vs. TrEMBL
Match: tr|A0A0A0L1Y3|A0A0A0L1Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374890 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPT 46
          MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPT
Sbjct: 1  MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPT 45

[Close]
BLAST of CsaV3_4G028520 vs. TrEMBL
Match: tr|A0A1S3CJJ1|A0A1S3CJJ1_CUCME (proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo OX=3656 GN=LOC103501166 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 95/112 (84.82%), Postives = 95/112 (84.82%), Query Frame = 0 

Query: 91  FLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPTXXXXXXXXPNXXXXXXXXXX 150
           FLIIAF ATLALSSINFG AARHL QTTPPLVPNLPAIPT        PNXXXXXXXXXX
Sbjct: 6   FLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPTGIPPFPALPNXXXXXXXXXX 65

Query: 151 XXXXXXXXXXIGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPPPATSSSP 203
           XXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXX  LSPPPATSSSP
Sbjct: 66  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFLSPPPATSSSP 117

The following BLAST results are available for this feature:
BLAST of CsaV3_4G028520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54597.13.5e-14100.00hypothetical protein Csa_4G374890 [Cucumis sativus][more]
XP_008462893.13.1e-1084.82PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo][more]
BLAST of CsaV3_4G028520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G028520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G028520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1Y3|A0A0A0L1Y3_CUCSA2.3e-14100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374890 PE=4 SV=1[more]
tr|A0A1S3CJJ1|A0A1S3CJJ1_CUCME2.0e-1084.82proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G028520.1CsaV3_4G028520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33088FAMILY NOT NAMEDcoord: 90..197
NoneNo IPR availablePANTHERPTHR33088FAMILY NOT NAMEDcoord: 1..89
NoneNo IPR availablePANTHERPTHR33088:SF5SUBFAMILY NOT NAMEDcoord: 1..89
NoneNo IPR availablePANTHERPTHR33088:SF5SUBFAMILY NOT NAMEDcoord: 90..197

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G028520Melon (DHL92) v3.6.1cucmedB290
CsaV3_4G028520Watermelon (Charleston Gray)cucwcgB292
CsaV3_4G028520Watermelon (97103) v1cucwmB371
CsaV3_4G028520Watermelon (97103) v2cucwmbB286
CsaV3_4G028520Watermelon (97103) v2cucwmbB298
CsaV3_4G028520Watermelon (97103) v2cucwmbB301
CsaV3_4G028520Wax gourdcucwgoB368
CsaV3_4G028520Wax gourdcucwgoB427
CsaV3_4G028520Silver-seed gourdcarcucB0195
CsaV3_4G028520Silver-seed gourdcarcucB0701
CsaV3_4G028520Silver-seed gourdcarcucB0865
CsaV3_4G028520Cucumber (Gy14) v2cgybcucB171
CsaV3_4G028520Cucumber (Gy14) v1cgycucB421
CsaV3_4G028520Cucurbita maxima (Rimu)cmacucB0338
CsaV3_4G028520Cucurbita maxima (Rimu)cmacucB0555
CsaV3_4G028520Cucurbita maxima (Rimu)cmacucB0848
CsaV3_4G028520Cucurbita moschata (Rifu)cmocucB0017
CsaV3_4G028520Cucurbita moschata (Rifu)cmocucB0333
CsaV3_4G028520Cucurbita moschata (Rifu)cmocucB0542
CsaV3_4G028520Cucurbita moschata (Rifu)cmocucB0835
CsaV3_4G028520Cucurbita pepo (Zucchini)cpecucB0206
CsaV3_4G028520Cucurbita pepo (Zucchini)cpecucB0505
CsaV3_4G028520Cucurbita pepo (Zucchini)cpecucB0711
CsaV3_4G028520Cucurbita pepo (Zucchini)cpecucB0971
CsaV3_4G028520Wild cucumber (PI 183967)cpicucB212
CsaV3_4G028520Bottle gourd (USVL1VR-Ls)cuclsiB313
CsaV3_4G028520Melon (DHL92) v3.5.1cucmeB298