CsaV3_4G027960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr4 : 17382453 .. 17384842 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGACTTTTCATTTCCAAGCACATGGCGAAGGTTCTTTTCACAAGCCAATCGTTAAACTCGTTTCGGTGTCTTCCAACTCTCAGGTGATCTTTTTAAACCTACTATTTTACCTTTATTTATTAAAGTTCTGAATTTTGATTCTCTTTGCTTTGATATCTGCAATCTTCGTGCAAATGTCTTACTGATTCTGAAAACTCAGGTGCTATTCTTCTCGATTAACCGAGACCAAAACCAAATCATCGACCAAAACCGTAAAGGCCACAGTCATGGCCGAGATGATCAACTCTAAACCTTGGTCCAGTGACCTCGAATCATCTCTGGCTTCACTCTCACCCTCTCTTTCTCAAACCACTGTTCTTCAAACTTTGGGTTTTCTGAGAGACACATCCAAAGCACTTCAATTCTTCAACTGGGCACAGGAAATGGGTTACACCCACACCGAACAATCATACTTCTCGATGCTAGAAATTTTGGGTCGCAACCGGCATCTTAATACGGCTAGGAATTTTTTGTTTTCGATTGAAAAACGGTCTCGTGGGATAGTCAAACTCGAAGCCCGCTTCTTCAATAGCTTAATGAGGAACTTTAATCGAGCTGGACTGTTTCAGGAATCTATAAAGGTGTTTACGATAATGAAATCACATGGAGTTTCTCCGTCGGTTGTTACATTTAACAGTCTTTTGACCATTTTGCTTAAAAGGGGTAGGACCAATATGGCAAAGAAAGTGTATGATGAAATGCTTAGTACTTATGGAGTGACTCCAGATACATTTACATTTAACATTTTGATTAGAGGATTTTGTATGAATGGTATGGTTGATGATGGTTTTAGGATTTTCAACGACTTATCTCGCTTTGGATGTGAACCGGATGTTGTTACATATAACACACTTGTTGATGGGTTGTGCAGGGCAGGTAAGGTTACCGTCGCATATAATGTGGTGAAGGGTATGGGGAAGAAAAGTGTGGATCTGAATCCCAATGTTGTTACATACACAACTTTGATTAGAGGTTATTGTGCAAAGCGAGAGATTGAGAAAGCCTTGGCTGTTTTTGAAGAAATGGTTAATCAAGGATTGAAAGCAAACAACATAACCTACAATACTTTAATTAAGGGGCTTTGTGAGGCCCGGAAATTTGAGAAAATAAAAGACATATTAGAGGGAACAGCGGGAGATGGAACATTTTCTCCTGACACATGCACATTCAACACTTTGATGCATTGCCATTGTCATGCTGGAAACTTGGATGACGCCCTGAAAGTGTTTGAGAGGATGTCAGAATTAAAGATTCAACCAGATTCGGCCACGTACAGTGCATTGGTTAGAAGTTTGTGTCAAGGAGGTCATTATGAGAAGGCAGAGGACTTGTTAGATAAACTATTAGAGAGAAAAATATTGTTAAGTGGTGACGGTTGTAAGCCTCTTGTTGCTGCATATAACCCCATTTTTAAGTATCTTTGTGAAACTGGAAAGACTAAGAAAGCTGAAAAGGCATTTAGACAGCTAATGAGAAGAGGAACGCAAGACCCTCCATCTTACAAGACTTTGATCATGGGGCATTGTAAAGAAGGTACATTTGAATCTGGGTATGAGTTACTAGTCTTGATGTTGAGGAAAGATTTTTTACCAGATTTCGAAACATACGAATCCTTAATCAACGGGCTTTTGCACATGGATAAGCCTCTTCTTGCCCTTCAGTCACTGGAAAAGATGCTGAGGAGCTCCCATCGTCCTAATTCATCTACCTTTCATTCTATACTTGCAAAACTATTAGAACAAGGAAGGACATCTGAGTCTGCTAGTCTTATACAATTAATGTTAGACAAGAATATTAGACAAAATCTTAGTTTCTCAACTGGCTGTGTAAGACTACTATTTGGAGCTGGAATGAATGACAAAGCATTCCAATTAGTTCACCTGCTTTATGGAAAGGGCTATTCGGTTAAAATGGAAGAATTAATCCGTTATCTTTGCCACTGTAGAAAGGTTATTCAGGGATCTAAACTGTTGCTATTTAGTTTGGAGAGTCATCAATTTGTAGACATGGATCTTTGCAATACAGTTATTTTTCAACTTTGTGAGATTAATAAGTTGTCTGAAGCATTTAGTCTGTACTATAAACTGGTTGAGATGGGGGTCCATCAACAGTTAAGCTGCCAAAACCAATTGAAAGTTTCTCTTGAGGCTGGGGAGAAATTGGAAGAGGCTGAGTTTGTATCAAAAAGGATGGAACCGGTGGAGATGGGAGTCCATCAACAGCTAAGCTGTCAAAACCAATTGAAATTTTCTCTCAAGGCTGGGGGAAAATTGGAAGAGGCTGAATCTGTACAGAAAAGGATGGAACGGCGTCTGAAATCTAAAAATTCCAATCCACGAGTGTAA

mRNA sequence

ATGGCCGGACTTTTCATTTCCAAGCACATGGCGAAGGTTCTTTTCACAAGCCAATCGTTAAACTCGTTTCGGTGTCTTCCAACTCTCAGGTGCTATTCTTCTCGATTAACCGAGACCAAAACCAAATCATCGACCAAAACCGTAAAGGCCACAGTCATGGCCGAGATGATCAACTCTAAACCTTGGTCCAGTGACCTCGAATCATCTCTGGCTTCACTCTCACCCTCTCTTTCTCAAACCACTGTTCTTCAAACTTTGGGTTTTCTGAGAGACACATCCAAAGCACTTCAATTCTTCAACTGGGCACAGGAAATGGGTTACACCCACACCGAACAATCATACTTCTCGATGCTAGAAATTTTGGGTCGCAACCGGCATCTTAATACGGCTAGGAATTTTTTGTTTTCGATTGAAAAACGGTCTCGTGGGATAGTCAAACTCGAAGCCCGCTTCTTCAATAGCTTAATGAGGAACTTTAATCGAGCTGGACTGTTTCAGGAATCTATAAAGGTGTTTACGATAATGAAATCACATGGAGTTTCTCCGTCGGTTGTTACATTTAACAGTCTTTTGACCATTTTGCTTAAAAGGGGTAGGACCAATATGGCAAAGAAAGTGTATGATGAAATGCTTAGTACTTATGGAGTGACTCCAGATACATTTACATTTAACATTTTGATTAGAGGATTTTGTATGAATGGTATGGTTGATGATGGTTTTAGGATTTTCAACGACTTATCTCGCTTTGGATGTGAACCGGATGTTGTTACATATAACACACTTGTTGATGGGTTGTGCAGGGCAGGTAAGGTTACCGTCGCATATAATGTGGTGAAGGGTATGGGGAAGAAAAGTGTGGATCTGAATCCCAATGTTGTTACATACACAACTTTGATTAGAGGTTATTGTGCAAAGCGAGAGATTGAGAAAGCCTTGGCTGTTTTTGAAGAAATGGTTAATCAAGGATTGAAAGCAAACAACATAACCTACAATACTTTAATTAAGGGGCTTTGTGAGGCCCGGAAATTTGAGAAAATAAAAGACATATTAGAGGGAACAGCGGGAGATGGAACATTTTCTCCTGACACATGCACATTCAACACTTTGATGCATTGCCATTGTCATGCTGGAAACTTGGATGACGCCCTGAAAGTGTTTGAGAGGATGTCAGAATTAAAGATTCAACCAGATTCGGCCACGTACAGTGCATTGGTTAGAAGTTTGTGTCAAGGAGGTCATTATGAGAAGGCAGAGGACTTGTTAGATAAACTATTAGAGAGAAAAATATTGTTAAGTGGTGACGGTTGTAAGCCTCTTGTTGCTGCATATAACCCCATTTTTAAGTATCTTTGTGAAACTGGAAAGACTAAGAAAGCTGAAAAGGCATTTAGACAGCTAATGAGAAGAGGAACGCAAGACCCTCCATCTTACAAGACTTTGATCATGGGGCATTGTAAAGAAGGTACATTTGAATCTGGGTATGAGTTACTAGTCTTGATGTTGAGGAAAGATTTTTTACCAGATTTCGAAACATACGAATCCTTAATCAACGGGCTTTTGCACATGGATAAGCCTCTTCTTGCCCTTCAGTCACTGGAAAAGATGCTGAGGAGCTCCCATCGTCCTAATTCATCTACCTTTCATTCTATACTTGCAAAACTATTAGAACAAGGAAGGACATCTGAGTCTGCTAGTCTTATACAATTAATGTTAGACAAGAATATTAGACAAAATCTTAGTTTCTCAACTGGCTGTGTAAGACTACTATTTGGAGCTGGAATGAATGACAAAGCATTCCAATTAGTTCACCTGCTTTATGGAAAGGGCTATTCGGTTAAAATGGAAGAATTAATCCGTTATCTTTGCCACTGTAGAAAGGTTATTCAGGGATCTAAACTGTTGCTATTTAGTTTGGAGAGTCATCAATTTGTAGACATGGATCTTTGCAATACAGTTATTTTTCAACTTTGTGAGATTAATAAGTTGTCTGAAGCATTTAGTCTGTACTATAAACTGGTTGAGATGGGGGTCCATCAACAGTTAAGCTGCCAAAACCAATTGAAAGTTTCTCTTGAGGCTGGGGAGAAATTGGAAGAGGCTGAGTTTGTATCAAAAAGGATGGAACCGGTGGAGATGGGAGTCCATCAACAGCTAAGCTGTCAAAACCAATTGAAATTTTCTCTCAAGGCTGGGGGAAAATTGGAAGAGGCTGAATCTGTACAGAAAAGGATGGAACGGCGTCTGAAATCTAAAAATTCCAATCCACGAGTGTAA

Coding sequence (CDS)

ATGGCCGGACTTTTCATTTCCAAGCACATGGCGAAGGTTCTTTTCACAAGCCAATCGTTAAACTCGTTTCGGTGTCTTCCAACTCTCAGGTGCTATTCTTCTCGATTAACCGAGACCAAAACCAAATCATCGACCAAAACCGTAAAGGCCACAGTCATGGCCGAGATGATCAACTCTAAACCTTGGTCCAGTGACCTCGAATCATCTCTGGCTTCACTCTCACCCTCTCTTTCTCAAACCACTGTTCTTCAAACTTTGGGTTTTCTGAGAGACACATCCAAAGCACTTCAATTCTTCAACTGGGCACAGGAAATGGGTTACACCCACACCGAACAATCATACTTCTCGATGCTAGAAATTTTGGGTCGCAACCGGCATCTTAATACGGCTAGGAATTTTTTGTTTTCGATTGAAAAACGGTCTCGTGGGATAGTCAAACTCGAAGCCCGCTTCTTCAATAGCTTAATGAGGAACTTTAATCGAGCTGGACTGTTTCAGGAATCTATAAAGGTGTTTACGATAATGAAATCACATGGAGTTTCTCCGTCGGTTGTTACATTTAACAGTCTTTTGACCATTTTGCTTAAAAGGGGTAGGACCAATATGGCAAAGAAAGTGTATGATGAAATGCTTAGTACTTATGGAGTGACTCCAGATACATTTACATTTAACATTTTGATTAGAGGATTTTGTATGAATGGTATGGTTGATGATGGTTTTAGGATTTTCAACGACTTATCTCGCTTTGGATGTGAACCGGATGTTGTTACATATAACACACTTGTTGATGGGTTGTGCAGGGCAGGTAAGGTTACCGTCGCATATAATGTGGTGAAGGGTATGGGGAAGAAAAGTGTGGATCTGAATCCCAATGTTGTTACATACACAACTTTGATTAGAGGTTATTGTGCAAAGCGAGAGATTGAGAAAGCCTTGGCTGTTTTTGAAGAAATGGTTAATCAAGGATTGAAAGCAAACAACATAACCTACAATACTTTAATTAAGGGGCTTTGTGAGGCCCGGAAATTTGAGAAAATAAAAGACATATTAGAGGGAACAGCGGGAGATGGAACATTTTCTCCTGACACATGCACATTCAACACTTTGATGCATTGCCATTGTCATGCTGGAAACTTGGATGACGCCCTGAAAGTGTTTGAGAGGATGTCAGAATTAAAGATTCAACCAGATTCGGCCACGTACAGTGCATTGGTTAGAAGTTTGTGTCAAGGAGGTCATTATGAGAAGGCAGAGGACTTGTTAGATAAACTATTAGAGAGAAAAATATTGTTAAGTGGTGACGGTTGTAAGCCTCTTGTTGCTGCATATAACCCCATTTTTAAGTATCTTTGTGAAACTGGAAAGACTAAGAAAGCTGAAAAGGCATTTAGACAGCTAATGAGAAGAGGAACGCAAGACCCTCCATCTTACAAGACTTTGATCATGGGGCATTGTAAAGAAGGTACATTTGAATCTGGGTATGAGTTACTAGTCTTGATGTTGAGGAAAGATTTTTTACCAGATTTCGAAACATACGAATCCTTAATCAACGGGCTTTTGCACATGGATAAGCCTCTTCTTGCCCTTCAGTCACTGGAAAAGATGCTGAGGAGCTCCCATCGTCCTAATTCATCTACCTTTCATTCTATACTTGCAAAACTATTAGAACAAGGAAGGACATCTGAGTCTGCTAGTCTTATACAATTAATGTTAGACAAGAATATTAGACAAAATCTTAGTTTCTCAACTGGCTGTGTAAGACTACTATTTGGAGCTGGAATGAATGACAAAGCATTCCAATTAGTTCACCTGCTTTATGGAAAGGGCTATTCGGTTAAAATGGAAGAATTAATCCGTTATCTTTGCCACTGTAGAAAGGTTATTCAGGGATCTAAACTGTTGCTATTTAGTTTGGAGAGTCATCAATTTGTAGACATGGATCTTTGCAATACAGTTATTTTTCAACTTTGTGAGATTAATAAGTTGTCTGAAGCATTTAGTCTGTACTATAAACTGGTTGAGATGGGGGTCCATCAACAGTTAAGCTGCCAAAACCAATTGAAAGTTTCTCTTGAGGCTGGGGAGAAATTGGAAGAGGCTGAGTTTGTATCAAAAAGGATGGAACCGGTGGAGATGGGAGTCCATCAACAGCTAAGCTGTCAAAACCAATTGAAATTTTCTCTCAAGGCTGGGGGAAAATTGGAAGAGGCTGAATCTGTACAGAAAAGGATGGAACGGCGTCTGAAATCTAAAAATTCCAATCCACGAGTGTAA

Protein sequence

MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKTKSSTKTVKATVMAEMINSKPWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKGYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFVSKRMEPVEMGVHQQLSCQNQLKFSLKAGGKLEEAESVQKRMERRLKSKNSNPRV
Homology
[Close]
BLAST of CsaV3_4G027960 vs. NCBI nr
Match: XP_004142707.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic [Cucumis sativus] >XP_011653773.1 PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic [Cucumis sativus] >KGN54533.1 hypothetical protein Csa_4G358710 [Cucumis sativus])

HSP 1 Score: 760.4 bits (1962), Expect = 5.9e-216
Identity = 757/757 (100.00%), Postives = 757/757 (100.00%), Query Frame = 0 

Query: 1   MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK 60
           MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK
Sbjct: 1   MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK 60

Query: 61  PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI 120
           PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI
Sbjct: 61  PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI 120

Query: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180
           LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV
Sbjct: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180

Query: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240
           SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF
Sbjct: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240

Query: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX 300
           RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX
Sbjct: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360
           XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS
Sbjct: 301 XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360

Query: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL 480
           XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL
Sbjct: 421 XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL 480

Query: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX 540
           IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX
Sbjct: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600

Query: 601 XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN 660
           XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN
Sbjct: 601 XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN 660

Query: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFXXXXXXXXXXXXXXXXXX 720
           KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFXXXXXXXXXXXXXXXXXX
Sbjct: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFXXXXXXXXXXXXXXXXXX 720

Query: 721 XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV 758
           XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV
Sbjct: 721 XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV 757

[Close]
BLAST of CsaV3_4G027960 vs. NCBI nr
Match: XP_008444214.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic [Cucumis melo] >XP_008444216.1 PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic [Cucumis melo])

HSP 1 Score: 682.6 bits (1760), Expect = 1.6e-192
Identity = 617/757 (81.51%), Postives = 624/757 (82.43%), Query Frame = 0 

Query: 1   MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK 60
           MAGL ISK+MA VLF SQSLNS+  LPTLRCYSSRLTET                 INSK
Sbjct: 1   MAGLSISKNMATVLFKSQSLNSYPRLPTLRCYSSRLTETVTKSSTKTEKARAMARMINSK 60

Query: 61  PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI 120
           PWSSDLESSLASLSPSLS+TTVLQTLGFLRD  KALQFFNWAQEMGYTHTEQSYFSMLEI
Sbjct: 61  PWSSDLESSLASLSPSLSKTTVLQTLGFLRDPPKALQFFNWAQEMGYTHTEQSYFSMLEI 120

Query: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180
           LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNF+RAGLFQESIKVFTIMKSHGV
Sbjct: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFSRAGLFQESIKVFTIMKSHGV 180

Query: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240
           SPSVVTFNSLLTILLKRGRTNMAK VY E   XXXXXXXXXXXXXXXRGFCMNGMVDDGF
Sbjct: 181 SPSVVTFNSLLTILLKRGRTNMAKNVYYEXXXXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240

Query: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX 300
           RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KGMGKKSVDLXXXXXXXXXXXX
Sbjct: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKGMGKKSVDLXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360
           XXXXXXXXX     FEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS
Sbjct: 301 XXXXXXXXXKALAVFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360

Query: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           PDTCTFNTLMHCHCHAGNLDDALKVFERMSELK XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL 480
           XXXXXXXXXLLS D     XXXXXXXXXXXXXXXXXXXXXXXXXXXX  GTQDPPSYKTL
Sbjct: 421 XXXXXXXXXLLSDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQDPPSYKTL 480

Query: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX 540
           IMGHCKEGTFESGYELLVLMLRKDFLPDFE YESLINGLLH+DKPL              
Sbjct: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFEIYESLINGLLHIDKPLLALQSLEKMLKSSH 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
                                                                       
Sbjct: 541 RPKSSTFHSILAKLLEQGSASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFL 600

Query: 601 XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN 660
                    YSVKMEELI YLCHCRKVIQ SKLLLFSLESHQFVDMD+CNTVIFQLCEI+
Sbjct: 601 LVHLLYKKGYSVKMEELIHYLCHCRKVIQASKLLLFSLESHQFVDMDVCNTVIFQLCEIS 660

Query: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFXXXXXXXXXXXXXXXXXX 720
           KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEA  XXXXXXXXXXXXXXXXXX
Sbjct: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAXXXXXXXXXXXXXXXXXXXX 720

Query: 721 XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV 758
           XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV
Sbjct: 721 XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV 757

[Close]
BLAST of CsaV3_4G027960 vs. NCBI nr
Match: XP_022144015.1 (pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Momordica charantia])

HSP 1 Score: 597.4 bits (1539), Expect = 6.6e-167
Identity = 469/678 (69.17%), Postives = 501/678 (73.89%), Query Frame = 0 

Query: 25  CLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSKPWSSDLESSLASLSPSLSQTTVLQ 84
           CLP LRCYSSRLT+T+                INSKPWS+DLESSLASLSPSLS+TTVLQ
Sbjct: 22  CLPALRCYSSRLTKTESKSSTKTKKARVMARMINSKPWSNDLESSLASLSPSLSKTTVLQ 81

Query: 85  TLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGI 144
           TLGFLRDTSKALQFFNWAQE GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRG+
Sbjct: 82  TLGFLRDTSKALQFFNWAQETGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGV 141

Query: 145 VKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAK 204
           VKLEARFFNSLMRNF+RAGLFQESIK+FT MKSHGVSPSVVTFNSLLTILLKRGRTNMAK
Sbjct: 142 VKLEARFFNSLMRNFSRAGLFQESIKLFTTMKSHGVSPSVVTFNSLLTILLKRGRTNMAK 201

Query: 205 KVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGFRIFNDXXXXXXXXXXXXXXXXXXX 264
            VYDEML                RGFCMNGMV++GF IF D XXXXXXXXXXXXXXXXXX
Sbjct: 202 NVYDEMLGTYGVTPDTYTFNILIRGFCMNGMVEEGFTIFKDMXXXXXXXXXXXXXXXXXX 261

Query: 265 XXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXXXXXXXXXXXXXXXXFEEMVNQGXX 324
           XXXXXXXXXXXXXX    KKSVDLXXXXXXXXXXXXXXXXXXXXXXXXXXFEEM++ GXX
Sbjct: 262 XXXXXXXXXXXXXXXXXXKKSVDLXXXXXXXXXXXXXXXXXXXXXXXXXXFEEMIDLGXX 321

Query: 325 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDTCTFNTLMHCHCHAGNLDDALK 384
           XXXXXXXXXXXXXXXXXXXXXXXXXXX       FSPDTCTFNTL+HCHC AGNLD+A +
Sbjct: 322 XXXXXXXXXXXXXXXXXXXXXXXXXXXVTAADGKFSPDTCTFNTLIHCHCDAGNLDEAQR 381

Query: 385 VFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSGDGCKPLXXXXX 444
           VFE+M+E  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSGDGCKPL     
Sbjct: 382 VFEKMTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSGDGCKPLVAAYN 441

Query: 445 XXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKD 504
                                  +RGTQDPPS+KT+IMGHCKEGTFESGYELLVLMLR+D
Sbjct: 442 PIFKYLSENGKTTKAERVFRQLMKRGTQDPPSFKTMIMGHCKEGTFESGYELLVLMLRRD 501

Query: 505 FLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 564
           FLPDFE YESLI+GLL+ DK L                                      
Sbjct: 502 FLPDFEIYESLIDGLLYKDKSLLALHTLEKMLRSSHLPKSSTFHSILAKLLEQGSASESA 561

Query: 565 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSVKMEELIRYLCHC 624
                                                        YSV+MEELI YLCHC
Sbjct: 562 NLIQIMLDKNIRQNLNFSTGCIRLLFGAGMNDKAFRIVGLLYENGYSVQMEELIHYLCHC 621

Query: 625 RKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLYYKLVEMGVHQQLSCQ 684
           +KVI+ SK+LLF LE+HQ V+MD+ NTVI +LCEINKLSEAFSLYYKLVE+GVHQQLSCQ
Sbjct: 622 KKVIEASKMLLFCLENHQSVNMDVYNTVICRLCEINKLSEAFSLYYKLVEIGVHQQLSCQ 681

Query: 685 NQLKVSLEAGEKLEEAEF 703
           +QLK SLEAG KLEEAEF
Sbjct: 682 SQLKXSLEAGGKLEEAEF 699

[Close]
BLAST of CsaV3_4G027960 vs. NCBI nr
Match: XP_022974264.1 (pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 584.7 bits (1506), Expect = 4.5e-163
Identity = 491/702 (69.94%), Postives = 515/702 (73.36%), Query Frame = 0 

Query: 1   MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK 60
           MA +   K  A V+F  QS N  R LP+LRCYSSRLTE +                INSK
Sbjct: 1   MAVISSFKDGAAVVFRRQSSNMHRRLPSLRCYSSRLTEAETKSSNKTKKARDMARMINSK 60

Query: 61  PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI 120
           PWS+DLESSLAS SPSLS+TTVLQTLGFLRD SKAL+FFNWAQEMGY HTEQS+FSMLEI
Sbjct: 61  PWSNDLESSLASFSPSLSKTTVLQTLGFLRDPSKALKFFNWAQEMGYAHTEQSFFSMLEI 120

Query: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180
           LGRNRHLNTARNFLFSIEKRSRG VKLEARFFNSLMRNF+RAGLFQESI +FT MKSHGV
Sbjct: 121 LGRNRHLNTARNFLFSIEKRSRGAVKLEARFFNSLMRNFSRAGLFQESINLFTTMKSHGV 180

Query: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240
           SPS+VTFNSLLTILLKRGRTNMAK VYDEMLS               RGFCMNGMVD+GF
Sbjct: 181 SPSIVTFNSLLTILLKRGRTNMAKNVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDEGF 240

Query: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX 300
           RIF DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GKKSVDLXXXXXXXXXXXX
Sbjct: 241 RIFKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKSVDLXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360
           XXXXXXXXXXX   FEEMVN  XXXXXXXXXXXXXXXXXXXXXXXXXXX        TFS
Sbjct: 301 XXXXXXXXXXXLAVFEEMVNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEATAVDGTFS 360

Query: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           PDTCTFNTLMHCHC AGNLD+AL+VFERM++LK                           
Sbjct: 361 PDTCTFNTLMHCHCDAGNLDEALRVFERMTKLKLRPDSATYSVLIRSLCEGKYYEKAENL 420

Query: 421 XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL 480
                    LLS DGCK  XXXXXXXXXXXXXXXXXXXXXXXXXXX RRGTQDPPSYKTL
Sbjct: 421 LDKLLEKRILLSDDGCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRRGTQDPPSYKTL 480

Query: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX 540
           IMGHC EGTFESGYELLVLMLRKDFLPD E Y              XXXXXXXXXXXXXX
Sbjct: 481 IMGHCNEGTFESGYELLVLMLRKDFLPDMEVYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXX                                          
Sbjct: 541 XXXXXXXXXXXXXXXXXXNASESASLIQLMLDQNIRQNLGFSTGCIRLLFEAGINDKAFQ 600

Query: 601 XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN 660
                    YSVKMEELI +LC+C+KVI+ SK+LLFSLESHQ VD+D+C+TVIF LC IN
Sbjct: 601 IVRMLYGNGYSVKMEELILFLCNCKKVIEASKMLLFSLESHQAVDIDVCSTVIFHLCHIN 660

Query: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEF 703
           KLSEAF LYYKLVEMGVHQQLSCQNQLKVSLE G K EEAEF
Sbjct: 661 KLSEAFGLYYKLVEMGVHQQLSCQNQLKVSLETGGKFEEAEF 702

[Close]
BLAST of CsaV3_4G027960 vs. NCBI nr
Match: XP_023539432.1 (pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 582.0 bits (1499), Expect = 2.9e-162
Identity = 519/702 (73.93%), Postives = 543/702 (77.35%), Query Frame = 0 

Query: 1   MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK 60
           MA +   K  A V+F  QS N  R LP+LRCYSSRLTE +                INSK
Sbjct: 1   MAVISSFKDGAAVVFRRQSSNMHRRLPSLRCYSSRLTEAETKSLNKTKKARDMARMINSK 60

Query: 61  PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI 120
           PWS+DLESSLAS SPSLS+TTVLQTLGFLRD SKAL+FFNWAQEMGY HTEQSYFSMLEI
Sbjct: 61  PWSNDLESSLASFSPSLSKTTVLQTLGFLRDPSKALKFFNWAQEMGYAHTEQSYFSMLEI 120

Query: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180
           LGRNRHLNTARNFLFSIEKRSRG VKLEARFFNSLMRNF+RAGLFQESI +FT MKSHGV
Sbjct: 121 LGRNRHLNTARNFLFSIEKRSRGAVKLEARFFNSLMRNFSRAGLFQESINLFTTMKSHGV 180

Query: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240
           SPS+VTFNSLLTILLKRGRTNMAK VYDEMLS               RGFCMNGMVD+GF
Sbjct: 181 SPSIVTFNSLLTILLKRGRTNMAKNVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDEGF 240

Query: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX 300
           RIF DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GKKSVDLXXXXXXXXXXXX
Sbjct: 241 RIFKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKSVDLXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360
           XXXXXXXXXXX   FEEMVN  XXXXXXXXXXXXXXXXXXXXXXXXXXX        TFS
Sbjct: 301 XXXXXXXXXXXLAVFEEMVNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEATAVDGTFS 360

Query: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           PDTCTFN LMHCHC AGNLD+AL+VFERM++LK  XXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 361 PDTCTFNILMHCHCDAGNLDEALRVFERMTKLKIQXXXXXXXXXXXXXXXXXXXXXXENL 420

Query: 421 XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL 480
                    LLS DGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXX RRGTQDPPSYKTL
Sbjct: 421 LDKLLEKRILLSDDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXMRRGTQDPPSYKTL 480

Query: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX 540
           IMGHC EGTFESGYELLVLMLRKDFLP                   XXXXXXXXXXXXXX
Sbjct: 481 IMGHCNEGTFESGYELLVLMLRKDFLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXX                                   
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXLIQLMLDKNIRQNLGFSTGCIRLLFEAGINDKAFQ 600

Query: 601 XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN 660
                    YSVKMEELI +LCHC+KVI+ SK+LLFSLESHQ VD+D+C+TVIF LC+IN
Sbjct: 601 IVRMLYGNGYSVKMEELILFLCHCKKVIEASKMLLFSLESHQAVDIDVCSTVIFHLCQIN 660

Query: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEF 703
           KLSEAF LYYKLVEMGVHQ+LSCQNQLKVSLE G K EEAEF
Sbjct: 661 KLSEAFGLYYKLVEMGVHQRLSCQNQLKVSLETGGKFEEAEF 702

[Close]
BLAST of CsaV3_4G027960 vs. TAIR10
Match: AT1G02060.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 263.5 bits (672), Expect = 4.1e-70
Identity = 386/649 (59.48%), Postives = 433/649 (66.72%), Query Frame = 0 

Query: 57  INSKPWSSDLESSLASLSPS--LSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSY 116
           +NS PWS +LESSL+SL PS  +S+TTVLQTL  ++  +  L+FF+W    G++H EQS+
Sbjct: 44  VNSNPWSDELESSLSSLHPSQTISRTTVLQTLRLIKVPADGLRFFDWVSNKGFSHKEQSF 103

Query: 117 FSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTI 176
           F MLE LGR R+LN ARNFLFSIE+RS G VKL+ R+FNSL+R++  AGLFQES+K+F  
Sbjct: 104 FLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQT 163

Query: 177 MKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNG 236
           MK  G+SPSV+TFNSLL+ILLKRGRT MA  ++DEM   XXXXXXXXXXXXXX       
Sbjct: 164 MKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTXXXXXXXXXXXXXXXXXXXXX 223

Query: 237 MVDDGFRIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDL-XXXXX 296
           MVD+ FRIF D   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GM KK+ D+ XXXXX
Sbjct: 224 MVDEAFRIFKDMELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGMLKKATDVXXXXXX 283

Query: 297 XXXXXXXXXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 356
           XXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 284 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKDILIGGN 343

Query: 357 XXXXTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXX 416
               TF+PD CTFN L+  HC AG+LD A+KVF+ M  +K XXXXXXXXXXXXXXXXXXX
Sbjct: 344 DAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLXXXXXXXXXXXXXXXXXXX 403

Query: 417 XXXXXXXXXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQD 476
           XXXXXXXXXXXXX   LL  D CKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXX+RG QD
Sbjct: 404 XXXXXXXXXXXXXKEVLLGKDECKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGVQD 463

Query: 477 PPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXX 536
           PPSYKTLI GHC+EG F+  YELLVL                           XXXXXXX
Sbjct: 464 PPSYKTLITGHCREGKFKPAYELLVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 523

Query: 537 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 596
           XXXXXXXXXXXXXXXXXXXXX                                       
Sbjct: 524 XXXXXXXXXXXXXXXXXXXXXAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSA 583

Query: 597 XXXXXXXXXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVI 656
                   XXXXXXXX                                Q VD+D CNTVI
Sbjct: 584 QKEKAFLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQMVDIDTCNTVI 643

Query: 657 FQLCEINKLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEF 703
             LC+  + SEAFSLY +LVE+G HQQLSC   L+ +LEA  K EE +F
Sbjct: 644 EGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQF 692

[Close]
BLAST of CsaV3_4G027960 vs. TAIR10
Match: AT1G07740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-07
Identity = 34/126 (26.98%), Postives = 63/126 (50.00%), Query Frame = 0 

Query: 83  LQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSR 142
           L  L  + D  +AL  F+  QEMG+ H   SY S++  L ++R+ +     L  +  R+ 
Sbjct: 53  LTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRN- 112

Query: 143 GIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNM 202
             V+     F  L++++ +AG   ++I VF  + S     ++ + N+L+ +L+  G    
Sbjct: 113 --VRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEK 172

Query: 203 AKKVYD 209
           AK  +D
Sbjct: 173 AKSFFD 175

[Close]
BLAST of CsaV3_4G027960 vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-06
Identity = 34/153 (22.22%), Postives = 69/153 (45.10%), Query Frame = 0 

Query: 95  ALQFFNWA--QEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFF 154
           ALQ F +A     G+TH   +Y S+L  L R R  +   + +  + + S   +K     F
Sbjct: 65  ALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADL-RNSYPPIKCGENLF 124

Query: 155 NSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLS 214
             L+RN+  AG ++ S+++F  +   GV  SV + N+LL +L++  R ++   ++     
Sbjct: 125 IDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKE 184

Query: 215 XXXXXXXXXXXXXXXRGFCMNGMVDDGFRIFND 246
                          +  C    ++  +++ ++
Sbjct: 185 SFGITPNIFTCNLLVKALCKKNDIESAYKVLDE 216

[Close]
BLAST of CsaV3_4G027960 vs. TAIR10
Match: AT1G74580.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 9.4e-06
Identity = 35/124 (28.23%), Postives = 64/124 (51.61%), Query Frame = 0 

Query: 73  LSPSLSQTTVLQTLGFLRDTSKALQFFN-WAQEMGYTHTEQSYFSMLEILGRNRHLNTAR 132
           + P L    V   +   +D  KAL+ FN   +E+G+ HT  +Y S++E LG         
Sbjct: 1   MGPPLLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAME 60

Query: 133 NFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLL 192
             L  + + + G   LE  +  + M+N+ R G  QE++ VF  M  +   P+V ++N+++
Sbjct: 61  EVLVDM-RENVGNHMLEGVYVGA-MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIM 120

Query: 193 TILL 196
           ++L+
Sbjct: 121 SVLV 122

[Close]
BLAST of CsaV3_4G027960 vs. TAIR10
Match: AT3G16010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 6.1e-05
Identity = 37/185 (20.00%), Postives = 74/185 (40.00%), Query Frame = 0 

Query: 62  WSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWA-QEMGYTHTEQSYFSMLEI 121
           W  D E +L  L   +    V   L    + +  +QFF WA +   + H   +Y +++  
Sbjct: 76  WGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRC 135

Query: 122 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 181
           L   R        +  + + +   V +     + L++   RA +  +++ VF   K    
Sbjct: 136 LEEARLYGEMYRTIQEVVRNT--YVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKC 195

Query: 182 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 241
            P+  T+NS++ +L++ G+     +VY EM +                 +   G  D   
Sbjct: 196 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 255

Query: 242 RIFND 246
           R+F++
Sbjct: 256 RLFDE 258

[Close]
BLAST of CsaV3_4G027960 vs. Swiss-Prot
Match: sp|O81908|PPR2_ARATH (Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g02060 PE=2 SV=2)

HSP 1 Score: 263.5 bits (672), Expect = 7.4e-69
Identity = 386/649 (59.48%), Postives = 433/649 (66.72%), Query Frame = 0 

Query: 57  INSKPWSSDLESSLASLSPS--LSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSY 116
           +NS PWS +LESSL+SL PS  +S+TTVLQTL  ++  +  L+FF+W    G++H EQS+
Sbjct: 44  VNSNPWSDELESSLSSLHPSQTISRTTVLQTLRLIKVPADGLRFFDWVSNKGFSHKEQSF 103

Query: 117 FSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTI 176
           F MLE LGR R+LN ARNFLFSIE+RS G VKL+ R+FNSL+R++  AGLFQES+K+F  
Sbjct: 104 FLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQT 163

Query: 177 MKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNG 236
           MK  G+SPSV+TFNSLL+ILLKRGRT MA  ++DEM   XXXXXXXXXXXXXX       
Sbjct: 164 MKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTXXXXXXXXXXXXXXXXXXXXX 223

Query: 237 MVDDGFRIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDL-XXXXX 296
           MVD+ FRIF D   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GM KK+ D+ XXXXX
Sbjct: 224 MVDEAFRIFKDMELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGMLKKATDVXXXXXX 283

Query: 297 XXXXXXXXXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 356
           XXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 284 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKDILIGGN 343

Query: 357 XXXXTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXX 416
               TF+PD CTFN L+  HC AG+LD A+KVF+ M  +K XXXXXXXXXXXXXXXXXXX
Sbjct: 344 DAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLXXXXXXXXXXXXXXXXXXX 403

Query: 417 XXXXXXXXXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQD 476
           XXXXXXXXXXXXX   LL  D CKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXX+RG QD
Sbjct: 404 XXXXXXXXXXXXXKEVLLGKDECKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGVQD 463

Query: 477 PPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXX 536
           PPSYKTLI GHC+EG F+  YELLVL                           XXXXXXX
Sbjct: 464 PPSYKTLITGHCREGKFKPAYELLVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 523

Query: 537 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 596
           XXXXXXXXXXXXXXXXXXXXX                                       
Sbjct: 524 XXXXXXXXXXXXXXXXXXXXXAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSA 583

Query: 597 XXXXXXXXXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVI 656
                   XXXXXXXX                                Q VD+D CNTVI
Sbjct: 584 QKEKAFLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQMVDIDTCNTVI 643

Query: 657 FQLCEINKLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEF 703
             LC+  + SEAFSLY +LVE+G HQQLSC   L+ +LEA  K EE +F
Sbjct: 644 EGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQF 692

[Close]
BLAST of CsaV3_4G027960 vs. Swiss-Prot
Match: sp|Q9LQQ1|PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-06
Identity = 34/126 (26.98%), Postives = 63/126 (50.00%), Query Frame = 0 

Query: 83  LQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSR 142
           L  L  + D  +AL  F+  QEMG+ H   SY S++  L ++R+ +     L  +  R+ 
Sbjct: 53  LTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRN- 112

Query: 143 GIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNM 202
             V+     F  L++++ +AG   ++I VF  + S     ++ + N+L+ +L+  G    
Sbjct: 113 --VRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEK 172

Query: 203 AKKVYD 209
           AK  +D
Sbjct: 173 AKSFFD 175

[Close]
BLAST of CsaV3_4G027960 vs. Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-05
Identity = 34/153 (22.22%), Postives = 69/153 (45.10%), Query Frame = 0 

Query: 95  ALQFFNWA--QEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFF 154
           ALQ F +A     G+TH   +Y S+L  L R R  +   + +  + + S   +K     F
Sbjct: 65  ALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADL-RNSYPPIKCGENLF 124

Query: 155 NSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLS 214
             L+RN+  AG ++ S+++F  +   GV  SV + N+LL +L++  R ++   ++     
Sbjct: 125 IDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKE 184

Query: 215 XXXXXXXXXXXXXXXRGFCMNGMVDDGFRIFND 246
                          +  C    ++  +++ ++
Sbjct: 185 SFGITPNIFTCNLLVKALCKKNDIESAYKVLDE 216

[Close]
BLAST of CsaV3_4G027960 vs. Swiss-Prot
Match: sp|Q9CA58|PP120_ARATH (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana OX=3702 GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-04
Identity = 35/124 (28.23%), Postives = 64/124 (51.61%), Query Frame = 0 

Query: 73  LSPSLSQTTVLQTLGFLRDTSKALQFFN-WAQEMGYTHTEQSYFSMLEILGRNRHLNTAR 132
           + P L    V   +   +D  KAL+ FN   +E+G+ HT  +Y S++E LG         
Sbjct: 1   MGPPLLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAME 60

Query: 133 NFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLL 192
             L  + + + G   LE  +  + M+N+ R G  QE++ VF  M  +   P+V ++N+++
Sbjct: 61  EVLVDM-RENVGNHMLEGVYVGA-MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIM 120

Query: 193 TILL 196
           ++L+
Sbjct: 121 SVLV 122

[Close]
BLAST of CsaV3_4G027960 vs. TrEMBL
Match: tr|A0A0A0KYI2|A0A0A0KYI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G358710 PE=4 SV=1)

HSP 1 Score: 760.4 bits (1962), Expect = 3.9e-216
Identity = 757/757 (100.00%), Postives = 757/757 (100.00%), Query Frame = 0 

Query: 1   MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK 60
           MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK
Sbjct: 1   MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK 60

Query: 61  PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI 120
           PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI
Sbjct: 61  PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI 120

Query: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180
           LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV
Sbjct: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180

Query: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240
           SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF
Sbjct: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240

Query: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX 300
           RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX
Sbjct: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360
           XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS
Sbjct: 301 XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360

Query: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL 480
           XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL
Sbjct: 421 XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL 480

Query: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX 540
           IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX
Sbjct: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600

Query: 601 XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN 660
           XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN
Sbjct: 601 XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN 660

Query: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFXXXXXXXXXXXXXXXXXX 720
           KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFXXXXXXXXXXXXXXXXXX
Sbjct: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFXXXXXXXXXXXXXXXXXX 720

Query: 721 XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV 758
           XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV
Sbjct: 721 XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV 757

[Close]
BLAST of CsaV3_4G027960 vs. TrEMBL
Match: tr|A0A1S3B9U6|A0A1S3B9U6_CUCME (pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487617 PE=4 SV=1)

HSP 1 Score: 682.6 bits (1760), Expect = 1.0e-192
Identity = 617/757 (81.51%), Postives = 624/757 (82.43%), Query Frame = 0 

Query: 1   MAGLFISKHMAKVLFTSQSLNSFRCLPTLRCYSSRLTETKXXXXXXXXXXXXXXXXINSK 60
           MAGL ISK+MA VLF SQSLNS+  LPTLRCYSSRLTET                 INSK
Sbjct: 1   MAGLSISKNMATVLFKSQSLNSYPRLPTLRCYSSRLTETVTKSSTKTEKARAMARMINSK 60

Query: 61  PWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEI 120
           PWSSDLESSLASLSPSLS+TTVLQTLGFLRD  KALQFFNWAQEMGYTHTEQSYFSMLEI
Sbjct: 61  PWSSDLESSLASLSPSLSKTTVLQTLGFLRDPPKALQFFNWAQEMGYTHTEQSYFSMLEI 120

Query: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180
           LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNF+RAGLFQESIKVFTIMKSHGV
Sbjct: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFSRAGLFQESIKVFTIMKSHGV 180

Query: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240
           SPSVVTFNSLLTILLKRGRTNMAK VY E   XXXXXXXXXXXXXXXRGFCMNGMVDDGF
Sbjct: 181 SPSVVTFNSLLTILLKRGRTNMAKNVYYEXXXXXXXXXXXXXXXXXXRGFCMNGMVDDGF 240

Query: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXXXXXX 300
           RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KGMGKKSVDLXXXXXXXXXXXX
Sbjct: 241 RIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKGMGKKSVDLXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360
           XXXXXXXXX     FEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS
Sbjct: 301 XXXXXXXXXKALAVFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 360

Query: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           PDTCTFNTLMHCHCHAGNLDDALKVFERMSELK XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPSYKTL 480
           XXXXXXXXXLLS D     XXXXXXXXXXXXXXXXXXXXXXXXXXXX  GTQDPPSYKTL
Sbjct: 421 XXXXXXXXXLLSDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQDPPSYKTL 480

Query: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXXXXXX 540
           IMGHCKEGTFESGYELLVLMLRKDFLPDFE YESLINGLLH+DKPL              
Sbjct: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFEIYESLINGLLHIDKPLLALQSLEKMLKSSH 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
                                                                       
Sbjct: 541 RPKSSTFHSILAKLLEQGSASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFL 600

Query: 601 XXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEIN 660
                    YSVKMEELI YLCHCRKVIQ SKLLLFSLESHQFVDMD+CNTVIFQLCEI+
Sbjct: 601 LVHLLYKKGYSVKMEELIHYLCHCRKVIQASKLLLFSLESHQFVDMDVCNTVIFQLCEIS 660

Query: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEFXXXXXXXXXXXXXXXXXX 720
           KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEA  XXXXXXXXXXXXXXXXXX
Sbjct: 661 KLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAXXXXXXXXXXXXXXXXXXXX 720

Query: 721 XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV 758
           XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV
Sbjct: 721 XXXXXXXXXXXXXXXXXXXXXXXXXRRLKSKNSNPRV 757

[Close]
BLAST of CsaV3_4G027960 vs. TrEMBL
Match: tr|A0A0D2QYU4|A0A0D2QYU4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G164900 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 4.6e-116
Identity = 322/646 (49.85%), Postives = 388/646 (60.06%), Query Frame = 0 

Query: 57   INSKPWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFS 116
            INS PWSS+LESS++SLSPSLS+TTVLQTL  +++ SKALQFFNW Q+MG+ H  QS+F 
Sbjct: 942  INSTPWSSELESSISSLSPSLSKTTVLQTLRLIKNPSKALQFFNWVQQMGFPHDAQSFFL 1001

Query: 117  MLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMK 176
            M+EILG+ R+LN ARN + SIEKRS G VKLE +FFNSL+R++ +AGLFQESIKVF  MK
Sbjct: 1002 MIEILGKERNLNAARNLMLSIEKRSNGSVKLEDKFFNSLIRSYGKAGLFQESIKVFETMK 1061

Query: 177  SHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMV 236
            S GVSPSVV+FN+LL+ILLKRGRTNMAK V++EMLS               +GFCMN MV
Sbjct: 1062 SIGVSPSVVSFNNLLSILLKRGRTNMAKSVFNEMLSTYGVTPDVYTFNILIKGFCMNSMV 1121

Query: 237  DDGFRIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXX 296
            D+GFR F +  XXXXXXXXXXXXXXXXXXXXXXXXX      KGM KKS+D XXXXXXXX
Sbjct: 1122 DEGFRFFKEMEXXXXXXXXXXXXXXXXXXXXXXXXXIAHNVVKGMSKKSLDXXXXXXXXX 1181

Query: 297  XXXXXXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 356
            XXXXXXXXX         F+EM+ +GXXXXXXXXXXXXXXXXXXXXXXX           
Sbjct: 1182 XXXXXXXXXQDIDEALAVFQEMICRGXXXXXXXXXXXXXXXXXXXXXXXIKEILERMGED 1241

Query: 357  XTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXX 416
              F+ DTCTFNTL++ HC+AGN+D+AL V +RMSE+K                       
Sbjct: 1242 GRFTLDTCTFNTLINAHCNAGNMDEALNVLKRMSEMKVQSDSATYSVIIRSLCQIADFEK 1301

Query: 417  XXXXXXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPS 476
                         LLS  GC PL                            +RG QDPP+
Sbjct: 1302 AEEFFDELAKKEILLSHVGCTPLVAAYNPMFEYLCANGKTKKAERVFRQLLKRGRQDPPA 1361

Query: 477  YKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXX 536
            YKTLI+GHCKEGTFE+GYELLVLMLR+DF P FE Y+SLI GLL   +PL          
Sbjct: 1362 YKTLILGHCKEGTFEAGYELLVLMLRRDFEPGFEIYDSLITGLLLKGEPLLARLTLEKML 1421

Query: 537  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 596
                                                                        
Sbjct: 1422 KSSHLPQTSSVHSILAELLKKSCAQEAASLVTLMLDHRIRLNINLSTQTVKLLLARRMQD 1481

Query: 597  XXXXXXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQL 656
                         Y V+ME+L+R+LC    +++  K++ FSLE HQ VD+++C TVI  L
Sbjct: 1482 KAFQVLVLLYDDGYMVEMEDLVRFLCQSGMLLEVCKMIQFSLEKHQTVDIEICCTVIEGL 1541

Query: 657  CEINKLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEF 703
            C   +LSEAFSLYY+LVE G H +L C + LK++L+AG +L EAEF
Sbjct: 1542 CNNRRLSEAFSLYYELVERGKHLELRCLDNLKMALQAGGRLNEAEF 1587

[Close]
BLAST of CsaV3_4G027960 vs. TrEMBL
Match: tr|A0A0B0M695|A0A0B0M695_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_12018 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 1.6e-113
Identity = 291/646 (45.05%), Postives = 356/646 (55.11%), Query Frame = 0 

Query: 57  INSKPWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFS 116
           INS PWSS+LESS++SLSPSLS+TTVLQTL  +++ SKALQFFNW Q+MG+ H  QS+F 
Sbjct: 68  INSTPWSSELESSISSLSPSLSKTTVLQTLRLIKNPSKALQFFNWVQQMGFPHDAQSFFL 127

Query: 117 MLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMK 176
           M+EILG+ R+L  ARN   SIEKRS G VKLE +FFNSL+R++ +AGLFQESIKVF  MK
Sbjct: 128 MIEILGKERNLYAARNLTLSIEKRSNGSVKLEDKFFNSLIRSYGKAGLFQESIKVFETMK 187

Query: 177 SHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMV 236
           S GVSPSV++FN+LL+ILLKRGRTNMAK V+DEMLS               +GF MN MV
Sbjct: 188 SIGVSPSVISFNNLLSILLKRGRTNMAKSVFDEMLSTYGVTPDVYTFNILIKGFGMNSMV 247

Query: 237 DDGFRIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXX 296
           D+GFR F +                                 KGM KKS+D XXXXXXXX
Sbjct: 248 DEGFRFFKEMERFKCDPDVVTYNTIVDGLCRVGKVRIAHNVVKGMSKKSLDXXXXXXXXX 307

Query: 297 XXXXXXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 356
           XXXXXXXXX         F+EM+ +GXXXXXXXXXXXXXXXXXXXXXX            
Sbjct: 308 XXXXXXXXXQDIDEALAVFQEMICRGXXXXXXXXXXXXXXXXXXXXXXKIKEILEGMRKD 367

Query: 357 XTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXX 416
             F+PDTCTFNTL++ HC+AGN+D+AL VF+RMSE+K                       
Sbjct: 368 GRFTPDTCTFNTLINAHCNAGNMDEALNVFKRMSEMKVQSDSATYSVIIRSLCQIADFEK 427

Query: 417 XXXXXXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPS 476
                        LL   GC P+                            +RG QDPP+
Sbjct: 428 AEEFFDELAKKEILLGHVGCTPVVAAYNPMFEYLCANGKTKKAERVFRQLLKRGRQDPPA 487

Query: 477 YKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXX 536
           YKTLI+GHCKEGTFE+GYELLVLMLR+DF P FE Y+SLI GLL   + L          
Sbjct: 488 YKTLILGHCKEGTFEAGYELLVLMLRRDFEPGFEIYDSLITGLLLKGESLLACLTLEKML 547

Query: 537 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 596
                                                                       
Sbjct: 548 KSSHLPQTSSVHSILAELLKKSCAQEAASLVTLMLDHRIRLNINLSTQTVKLLLARRMQD 607

Query: 597 XXXXXXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQL 656
                        Y VKME+L+ +LC    +++  K++ FSLE HQ  D+++C TVI  L
Sbjct: 608 KAFQVLVLLYDDGYMVKMEDLVHFLCQSGMLLEACKMIQFSLEKHQTADIEICCTVIEGL 667

Query: 657 CEINKLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEF 703
           C   +LSEAF LYY+LVE G H +L C + LK++L+AG +L EAEF
Sbjct: 668 CNNRRLSEAFGLYYELVERGKHLELRCLDNLKITLQAGGRLNEAEF 713

[Close]
BLAST of CsaV3_4G027960 vs. TrEMBL
Match: tr|A0A2P5AA52|A0A2P5AA52_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_353060 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 6.9e-112
Identity = 381/646 (58.98%), Postives = 426/646 (65.94%), Query Frame = 0 

Query: 57  INSKPWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFS 116
           INSKPWSSDLESSL+ LSPSLSQTTVLQTL  +   SKA QFF W Q+MG++H +QSYF 
Sbjct: 5   INSKPWSSDLESSLSILSPSLSQTTVLQTLKLITSPSKAFQFFKWVQQMGFSHHDQSYFM 64

Query: 117 MLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMK 176
           MLEILGR+R+LN ARN LFSIEK S G+VKLE RFFNSL+RN+ RAGLFQES K+FT MK
Sbjct: 65  MLEILGRSRNLNAARNLLFSIEKNSNGLVKLEDRFFNSLIRNYGRAGLFQESAKLFTTMK 124

Query: 177 SHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSXXXXXXXXXXXXXXXRGFCMNGMV 236
           S GVSPSV++FNSL +ILLKRG+TNMAK VYDEML+               RGFCMN MV
Sbjct: 125 SLGVSPSVISFNSLFSILLKRGQTNMAKSVYDEMLNTYGVTPDTFTFNILIRGFCMNSMV 184

Query: 237 DDGFRIFNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMGKKSVDLXXXXXXXX 296
           D+GFR F D  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     KS  LXXXXXXXX
Sbjct: 185 DEGFRFFKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKSPALXXXXXXXX 244

Query: 297 XXXXXXXXXXXXXXXXXXFEEMVNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 356
           XXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 245 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRS 304

Query: 357 XTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKXXXXXXXXXXXXXXXXXXXXXXX 416
             F PDTCTFN LMH HC AGNLD+ALKVF +     XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 305 GEFIPDTCTFNILMHEHCKAGNLDEALKVFAKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 364

Query: 417 XXXXXXXXXXXXXLLSGDGCKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTQDPPS 476
           XXXXXXXXXXXXX     GC+PL                            +RGTQDPPS
Sbjct: 365 XXXXXXXXXXXXXXXXDAGCRPLVAAYNPIFEYLCRNGKTKKAEGVFRQLMKRGTQDPPS 424

Query: 477 YKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLXXXXXXXXXX 536
           YK LIMGHC+EGTFE+GYELLVLMLR+DF+PD E YESLINGLL  DKPL          
Sbjct: 425 YKILIMGHCREGTFEAGYELLVLMLRRDFVPDVEIYESLINGLLQKDKPLLAKLTIEKML 484

Query: 537 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 596
                                                                       
Sbjct: 485 KSSHLPRTSIFHAILAELIEKGCARDSASFVTLMLERKIRQNITLSTDLITLLFGSGLGD 544

Query: 597 XXXXXXXXXXXXXYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQL 656
                        Y+VKME+L+ +LC   K+++  KLL FS++ HQ VD++L NTV+  L
Sbjct: 545 KAFELVTLLYENEYTVKMEDLVGFLCRKNKLLEACKLLQFSVQKHQSVDIELFNTVLIGL 604

Query: 657 CEINKLSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEAEF 703
            +I K+ EAF L+Y+LVE GVHQQL+C   LK +L    +  EAEF
Sbjct: 605 SKIKKVKEAFGLFYELVEKGVHQQLACLEDLKSALVVAGRSTEAEF 650

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142707.15.9e-216100.00PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic ... [more]
XP_008444214.11.6e-19281.51PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic ... [more]
XP_022144015.16.6e-16769.17pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Momor... [more]
XP_022974264.14.5e-16369.94pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucur... [more]
XP_023539432.12.9e-16273.93pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucur... [more]
BLAST of CsaV3_4G027960 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02060.14.1e-7059.48Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G07740.12.9e-0726.98Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G16420.11.1e-0622.22Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G74580.19.4e-0628.23Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G16010.16.1e-0520.00Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of CsaV3_4G027960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O81908|PPR2_ARATH7.4e-6959.48Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidop... [more]
sp|Q9LQQ1|PPR20_ARATH5.2e-0626.98Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop... [more]
sp|Q9FFE3|PP388_ARATH2.0e-0522.22Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop... [more]
sp|Q9CA58|PP120_ARATH1.7e-0428.23Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis th... [more]
BLAST of CsaV3_4G027960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYI2|A0A0A0KYI2_CUCSA3.9e-216100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G358710 PE=4 SV=1[more]
tr|A0A1S3B9U6|A0A1S3B9U6_CUCME1.0e-19281.51pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Cucumis ... [more]
tr|A0A0D2QYU4|A0A0D2QYU4_GOSRA4.6e-11649.85Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G164900 PE=4 ... [more]
tr|A0A0B0M695|A0A0B0M695_GOSAR1.6e-11345.05Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_12018 PE=4 SV=1[more]
tr|A0A2P5AA52|A0A2P5AA52_PARAD6.9e-11258.98Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006338 chromatin remodeling
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006281 DNA repair
biological_process GO:0009813 flavonoid biosynthetic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005657 replication fork
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004003 ATP-dependent DNA helicase activity
molecular_function GO:0016210 naringenin-chalcone synthase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G027960.1CsaV3_4G027960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 734..754
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 737..757
NoneNo IPR availablePANTHERPTHR24015:SF863SUBFAMILY NOT NAMEDcoord: 33..643
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 33..643
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 297..503
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 146..193
e-value: 1.3E-5
score: 25.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 361..410
e-value: 3.3E-16
score: 59.1
coord: 218..267
e-value: 1.9E-17
score: 63.0
coord: 290..338
e-value: 2.0E-19
score: 69.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 221..255
e-value: 3.4E-10
score: 37.5
coord: 328..351
e-value: 9.9E-5
score: 20.3
coord: 293..326
e-value: 3.1E-10
score: 37.6
coord: 442..470
e-value: 7.9E-4
score: 17.4
coord: 185..220
e-value: 3.6E-6
score: 24.8
coord: 476..508
e-value: 5.5E-4
score: 17.9
coord: 400..430
e-value: 1.8E-6
score: 25.7
coord: 152..184
e-value: 2.1E-4
score: 19.2
coord: 256..286
e-value: 6.7E-6
score: 23.9
coord: 364..398
e-value: 4.2E-11
score: 40.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 476..504
e-value: 0.0036
score: 17.4
coord: 649..677
e-value: 0.15
score: 12.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 75..109
score: 5.185
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 717..747
score: 5.02
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 326..360
score: 8.78
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 110..146
score: 5.952
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..288
score: 10.961
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 473..507
score: 10.282
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 291..325
score: 13.121
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 148..182
score: 10.249
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 362..396
score: 13.121
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 397..431
score: 11.049
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 439..469
score: 7.344
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 183..218
score: 9.449
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..253
score: 13.022
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 508..542
score: 9.12
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 543..577
score: 7.98
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 645..679
score: 8.21
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 430..550
e-value: 3.8E-19
score: 71.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 213..282
e-value: 8.3E-23
score: 82.8
coord: 33..212
e-value: 4.3E-23
score: 83.8
coord: 354..429
e-value: 1.6E-20
score: 75.4
coord: 283..353
e-value: 3.7E-22
score: 80.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G027960CSPI04G17480Wild cucumber (PI 183967)cpicucB212
CsaV3_4G027960Cucsa.018380Cucumber (Gy14) v1cgycucB405
CsaV3_4G027960CsGy4G016690Cucumber (Gy14) v2cgybcucB171
CsaV3_4G027960MELO3C010518Melon (DHL92) v3.5.1cucmeB298
CsaV3_4G027960MELO3C010518.2Melon (DHL92) v3.6.1cucmedB290
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G027960Silver-seed gourdcarcucB0701
CsaV3_4G027960Silver-seed gourdcarcucB1091
CsaV3_4G027960Cucurbita maxima (Rimu)cmacucB0029
CsaV3_4G027960Cucurbita maxima (Rimu)cmacucB0555
CsaV3_4G027960Cucurbita moschata (Rifu)cmocucB0017
CsaV3_4G027960Cucurbita moschata (Rifu)cmocucB0542
CsaV3_4G027960Cucurbita pepo (Zucchini)cpecucB0711
CsaV3_4G027960Cucurbita pepo (Zucchini)cpecucB0971
CsaV3_4G027960Bottle gourd (USVL1VR-Ls)cuclsiB315
CsaV3_4G027960Bottle gourd (USVL1VR-Ls)cuclsiB339
CsaV3_4G027960Watermelon (Charleston Gray)cucwcgB292
CsaV3_4G027960Watermelon (97103) v1cucwmB371
CsaV3_4G027960Watermelon (97103) v2cucwmbB286
CsaV3_4G027960Wax gourdcucwgoB427