CsaV3_4G027550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027550
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionOxidoreductase
Locationchr4 : 16728943 .. 16729842 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGGAGATACATGTAAGACCTGCAATCATCCACACTCAAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGAGTACGTTTCTGTTATGGATGTGGAGATCATTGGTGCTATGGATGTGGGGACCAGCGTGGAGGTTTATAAGGGGTTTTGAGGAAGAAATTGAGGGCGTGGGTTATTTGAGTTGAGACGACTAGTTGTACATGTCTTGAAGTTGTATCAATATATCGTGCTATCAGAGTGTGTATTACCTGTTTTTCTTATTTGTTGGGCATTACTGCGTGCATGATTACAATAGATGCCTATTAATAAGGATATAGTAGTAATTAACTAGGGACTTCTGGTTATAAATTGAGAGAGTGAGGGTTTGTGAGAGGTAATATTTTGGTGAATCAAACCGAAAGCTATTGATATTATTTTTAGTTTCTTTTGATTTGCAATATAATTTTTGTTTTTCATCTTGTTTGTACTTGGGATCTGAAAACATTCTTCCAGAGGGGCATCGCATGCATGGGCTAGTGCCTTTGCTTTCTTTCCAGTATTTTTTTTACTTCGAATATAGCTGGTGTACAACAAGTTCTACTTCTCCAAATTGTACGTTAAAGGCTTAAGGGGAAGTTCTTCAATCAATCAATTATTTCTCCTTTCGGATCTAAAACAATTTGATTTGAGGGGTTATCAACCCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTACTCCGATGGAGATTTTGAAATAAGTTTGAGTAGTCTGCAGGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAATATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTAG

mRNA sequence

GAGGAGATACATGTAAGACCTGCAATCATCCACACTCAAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGAGTACGTTTCTGTTATGGATGTGGAGATCATTGGTGCTATGGATGTGGGGACCAGCGTGGAGGGGTTATCAACCCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTACTCCGATGGAGATTTTGAAATAAGTTTGAGTAGTCTGCAGGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAATATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTA

Coding sequence (CDS)

GAGGAGATACATGTAAGACCTGCAATCATCCACACTCAAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGAGTACGTTTCTGTTATGGATGTGGAGATCATTGGTGCTATGGATGTGGGGACCAGCGTGGAGGGGTTATCAACCCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTACTCCGATGGAGATTTTGAAATAAGTTTGAGTAGTCTGCAGGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAATATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTA

Protein sequence

EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGDHWCYGCGDQRGGVINPSPPMEPIPLTHSRFYSDGDFEISLSSLQAAAFLEERLFEYPYLVDLFPDAFVASFKDDVQDNLTVTSQPHRX
Homology
[Close]
BLAST of CsaV3_4G027550 vs. NCBI nr
Match: KGN54486.1 (Oxidoreductase [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-11
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1   EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGXXXXXXXXXXRGGV 47
           EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGXXXXXXXXXXRGG+
Sbjct: 257 EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGXXXXXXXXXXRGGL 302

[Close]
BLAST of CsaV3_4G027550 vs. TrEMBL
Match: tr|A0A0A0L305|A0A0A0L305_CUCSA (Oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_4G337920 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-11
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1   EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGXXXXXXXXXXRGGV 47
           EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGXXXXXXXXXXRGG+
Sbjct: 257 EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGXXXXXXXXXXRGGL 302

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54486.14.8e-1197.83Oxidoreductase [Cucumis sativus][more]
BLAST of CsaV3_4G027550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L305|A0A0A0L305_CUCSA3.2e-1197.83Oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_4G337920 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G027550.1CsaV3_4G027550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G027550Silver-seed gourdcarcucB0511
CsaV3_4G027550Silver-seed gourdcarcucB0562
CsaV3_4G027550Cucumber (Gy14) v2cgybcucB171
CsaV3_4G027550Cucumber (Gy14) v1cgycucB405
CsaV3_4G027550Cucurbita maxima (Rimu)cmacucB0803
CsaV3_4G027550Cucurbita maxima (Rimu)cmacucB1027
CsaV3_4G027550Cucurbita moschata (Rifu)cmocucB0788
CsaV3_4G027550Cucurbita moschata (Rifu)cmocucB1011
CsaV3_4G027550Cucurbita pepo (Zucchini)cpecucB0082
CsaV3_4G027550Cucurbita pepo (Zucchini)cpecucB0606
CsaV3_4G027550Wild cucumber (PI 183967)cpicucB212
CsaV3_4G027550Watermelon (97103) v1cucwmB361