CsaV3_4G026980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G026980
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 16078602 .. 16079719 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCAATAAACTTCTATAAACACTTTTAGATGGATAATGGTAAATCAAAGTGGAAATCTACCTTGCCAGCTATCACATACAATGACTTGTGTCCACTATTATCAAGTTTATGCATATTCTATTAATTCTTTATTATTTCCTATCCCTAAAATATGAAATTTATGGCTGTATAAATTTATGAATTGTCACCATCAATATACAGTAAATACCCACAAAAGAAAATTTCCTAAAATCTCTAAAATTTCCAAAACCTTATTTGGTATCAGAGCTTTCACATGGCCAACACCAATCTCGCCACTGCCATCATCAGGTCTTCCTCAACCAGTTTTTCAAATCCTCTTCTCAACCAAGTTTTCAACCAACTGACAACAACCAAGCTTGACCGGAGCAATTACCTTATATGGAAGACTAGCTATGACCTTCAGATCCTCAAAGGTTACAAGAGTTAGACAGCCATCTATCCGGTGAGACTCCATGCCTTCCGAAGTTCATCCCAACAGATTCCAATACGAGTGCTTCAGAAATAGAAGAAGCTAAAGGTGTTGCTCATCGTGCTTCGTCAAGTTTGCAGGCTACAATAATCACCAACTCTTTATTTGAACAATGGGTAACCACTAATTTATTGTTGCTTAGATGGATTTATAATTCCATGACATCAGAAGTTGCAATCCAATTAATGAGATTCATCGGTGCTAAAGATCTGTGGGAAGCAATAACACAAGATTTTGTTGGTGTTCAATCAAGAGTCGAAGAAAACTTCCTCCAACAAACGTCTCAGACAACTAGAAAAGATAATTCCAAAATGGAGGACTACTTACATATTACAAAAATGAATGCTGACAATCTTAGTCAAACTGATAGCCTTGTCCCTCCACAAGTCCTTTCATATGTTCTATTGGAATTAAACGAAGTTTACAATATGGTAATTGCTGTCGTTCAAGGAAAACCGAATATATCCTAGTTGGATATGTAATCAGAGGTCCTCATATTTGAAAAAAAGACTGGAGCATCAGAATACTTAAAATGTTATTGGTAGTATTATTCCCAATGTTTCTGTTAATGTGGCACAAAGTCGAAATCCCAATGAATCTAGAACCCACCTGTTGGAATTGATGCTC

mRNA sequence

ATGACATCAGAAGTTGCAATCCAATTAATGAGATTCATCGGTGCTAAAGATCTGTGGGAAGCAATAACACAAGATTTTGTTGGTGTTCAATCAAGAGTCGAAGAAAACTTCCTCCAACAAACGTCTCAGACAACTAGAAAAGATAATTCCAAAATGGAGGACTACTTACATATTACAAAAATGAATGCTGACAATCTTAGTCAAACTGATAGCCTTGTCCCTCCACAAGTCCTTTCATATGTTCTATTGGAATTAAACGAAGTTTACAATATGGTAATTGCTGTCGTTCAAGGAAAACCGAATATATCCTAG

Coding sequence (CDS)

ATGACATCAGAAGTTGCAATCCAATTAATGAGATTCATCGGTGCTAAAGATCTGTGGGAAGCAATAACACAAGATTTTGTTGGTGTTCAATCAAGAGTCGAAGAAAACTTCCTCCAACAAACGTCTCAGACAACTAGAAAAGATAATTCCAAAATGGAGGACTACTTACATATTACAAAAATGAATGCTGACAATCTTAGTCAAACTGATAGCCTTGTCCCTCCACAAGTCCTTTCATATGTTCTATTGGAATTAAACGAAGTTTACAATATGGTAATTGCTGTCGTTCAAGGAAAACCGAATATATCCTAG

Protein sequence

MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS
Homology
[Close]
BLAST of CsaV3_4G026980 vs. NCBI nr
Match: KGN54432.1 (hypothetical protein Csa_4G329050 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 4.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
           MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK
Sbjct: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 61  MNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS 104
           MNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS
Sbjct: 61  MNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS 103

[Close]
BLAST of CsaV3_4G026980 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 4.3e-24
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 0 

Query: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
           +T EV +QL+ F  AKD+WEA T DF GV+SR EE+FL+QT QTTRK NS MEDYL I K
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEA-THDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMK 85

Query: 61  MNADNLSQTDSLVPPQVL-SYVLLELNEVYNMVIAVVQGKPNIS 104
            NADNL Q +S +P + L S VLL L+EVYN VI V+QGKP IS
Sbjct: 86  TNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEIS 128

[Close]
BLAST of CsaV3_4G026980 vs. NCBI nr
Match: KGN44003.1 (hypothetical protein Csa_7G091720 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-19
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 0 

Query: 1  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
          MT EVA+QLM F  AKDLWEAI QD  GVQ R EE+FL+ T QTT+K NSKMEDYLH  K
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAI-QDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMK 60

Query: 61 MNADNLSQTDSLVP-PQVLSYVLLELNEVYNMVIAVV 97
           N DNL Q  S VP   ++S V+L L+E+YN V AV+
Sbjct: 61 TNVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]
BLAST of CsaV3_4G026980 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 9.5e-16
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 0 

Query: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
           MT EVA Q+M +  A DLW AI Q+  GVQS+ EE++L+Q  Q TRK + KM D+L + K
Sbjct: 53  MTPEVATQVMGYENACDLWAAI-QELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMK 112

Query: 61  MNADNLSQTDSLVPPQ-VLSYVLLELNEVYNMVIAVVQGKPNIS 104
            +ADNL Q  S VP + ++S VLL L+E YN V+A +QGK  IS
Sbjct: 113 SHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGIS 155

[Close]
BLAST of CsaV3_4G026980 vs. NCBI nr
Match: KGN59849.1 (hypothetical protein Csa_3G850540 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 0 

Query: 1  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
          M  +V +Q M F   +DLW+ I QD  GVQSRVEE+FL QT  TTRKDN  MEDYL I K
Sbjct: 1  MVPDVTLQFMGFNTTRDLWKVI-QDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMK 60

Query: 61 MNADNLSQTDSLVPPQ-------VLSYVLLELNEV 89
           N DNLSQ  S VPP+       ++  +L+ +N V
Sbjct: 61 TNTDNLSQAGSPVPPRSSISQGVIIDRILIPINLV 94

[Close]
BLAST of CsaV3_4G026980 vs. TrEMBL
Match: tr|A0A0A0L1H3|A0A0A0L1H3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329050 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.8e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
           MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK
Sbjct: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 61  MNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS 104
           MNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS
Sbjct: 61  MNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS 103

[Close]
BLAST of CsaV3_4G026980 vs. TrEMBL
Match: tr|A0A0A0LXB7|A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 0 

Query: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
           +T EV +QL+ F  AKD+WEA T DF GV+SR EE+FL+QT QTTRK NS MEDYL I K
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEA-THDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMK 85

Query: 61  MNADNLSQTDSLVPPQVL-SYVLLELNEVYNMVIAVVQGKPNIS 104
            NADNL Q +S +P + L S VLL L+EVYN VI V+QGKP IS
Sbjct: 86  TNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEIS 128

[Close]
BLAST of CsaV3_4G026980 vs. TrEMBL
Match: tr|A0A0A0K3F9|A0A0A0K3F9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-19
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 0 

Query: 1  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
          MT EVA+QLM F  AKDLWEAI QD  GVQ R EE+FL+ T QTT+K NSKMEDYLH  K
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAI-QDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMK 60

Query: 61 MNADNLSQTDSLVP-PQVLSYVLLELNEVYNMVIAVV 97
           N DNL Q  S VP   ++S V+L L+E+YN V AV+
Sbjct: 61 TNVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]
BLAST of CsaV3_4G026980 vs. TrEMBL
Match: tr|A0A0A0LFV1|A0A0A0LFV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850540 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-13
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 0 

Query: 1  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
          M  +V +Q M F   +DLW+ I QD  GVQSRVEE+FL QT  TTRKDN  MEDYL I K
Sbjct: 1  MVPDVTLQFMGFNTTRDLWKVI-QDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMK 60

Query: 61 MNADNLSQTDSLVPPQ-------VLSYVLLELNEV 89
           N DNLSQ  S VPP+       ++  +L+ +N V
Sbjct: 61 TNTDNLSQAGSPVPPRSSISQGVIIDRILIPINLV 94

[Close]
BLAST of CsaV3_4G026980 vs. TrEMBL
Match: tr|A0A1S4E1U9|A0A1S4E1U9_CUCME (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-10
Identity = 46/103 (44.66%), Postives = 55/103 (53.40%), Query Frame = 0 

Query: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60
           MT +VAIQLM F   +DLW+A TQDF GVQSR EE+FL+Q  QTTRK             
Sbjct: 123 MTPDVAIQLMGFTNVEDLWDA-TQDFFGVQSRAEEDFLRQMLQTTRKG------------ 182

Query: 61  MNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS 104
                                   L+EVYN+VI V+QGKP+IS
Sbjct: 183 ------------------------LDEVYNLVIVVIQGKPDIS 188

The following BLAST results are available for this feature:
BLAST of CsaV3_4G026980 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54432.14.2e-48100.00hypothetical protein Csa_4G329050 [Cucumis sativus][more]
KGN65684.14.3e-2463.46hypothetical protein Csa_1G496800 [Cucumis sativus][more]
KGN44003.15.4e-1961.86hypothetical protein Csa_7G091720 [Cucumis sativus][more]
XP_022148963.19.5e-1651.92uncharacterized protein LOC111017501 [Momordica charantia][more]
KGN59849.11.5e-1351.58hypothetical protein Csa_3G850540 [Cucumis sativus][more]
BLAST of CsaV3_4G026980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G026980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G026980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1H3|A0A0A0L1H3_CUCSA2.8e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329050 PE=4 SV=1[more]
tr|A0A0A0LXB7|A0A0A0LXB7_CUCSA2.8e-2463.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1[more]
tr|A0A0A0K3F9|A0A0A0K3F9_CUCSA3.6e-1961.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1[more]
tr|A0A0A0LFV1|A0A0A0LFV1_CUCSA1.0e-1351.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850540 PE=4 SV=1[more]
tr|A0A1S4E1U9|A0A1S4E1U9_CUCME8.8e-1044.66uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G026980.1CsaV3_4G026980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G026980CSPI04G16380Wild cucumber (PI 183967)cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G026980Cucumber (Chinese Long) v3cuccucB116
CsaV3_4G026980Cucumber (Chinese Long) v3cuccucB179
CsaV3_4G026980Silver-seed gourdcarcucB0020
CsaV3_4G026980Silver-seed gourdcarcucB0183
CsaV3_4G026980Silver-seed gourdcarcucB0293
CsaV3_4G026980Silver-seed gourdcarcucB0316
CsaV3_4G026980Silver-seed gourdcarcucB0661
CsaV3_4G026980Silver-seed gourdcarcucB1042
CsaV3_4G026980Cucumber (Gy14) v2cgybcucB128
CsaV3_4G026980Cucumber (Gy14) v2cgybcucB171
CsaV3_4G026980Cucumber (Gy14) v2cgybcucB283
CsaV3_4G026980Cucumber (Gy14) v1cgycucB185
CsaV3_4G026980Cucumber (Gy14) v1cgycucB282
CsaV3_4G026980Cucurbita maxima (Rimu)cmacucB0301
CsaV3_4G026980Cucurbita maxima (Rimu)cmacucB0339
CsaV3_4G026980Cucurbita maxima (Rimu)cmacucB0797
CsaV3_4G026980Cucurbita maxima (Rimu)cmacucB0851
CsaV3_4G026980Cucurbita maxima (Rimu)cmacucB0988
CsaV3_4G026980Cucurbita maxima (Rimu)cmacucB1020
CsaV3_4G026980Cucurbita moschata (Rifu)cmocucB0294
CsaV3_4G026980Cucurbita moschata (Rifu)cmocucB0334
CsaV3_4G026980Cucurbita moschata (Rifu)cmocucB0781
CsaV3_4G026980Cucurbita moschata (Rifu)cmocucB0838
CsaV3_4G026980Cucurbita moschata (Rifu)cmocucB0972
CsaV3_4G026980Cucurbita moschata (Rifu)cmocucB1004
CsaV3_4G026980Cucurbita pepo (Zucchini)cpecucB0075
CsaV3_4G026980Cucurbita pepo (Zucchini)cpecucB0208
CsaV3_4G026980Cucurbita pepo (Zucchini)cpecucB0509
CsaV3_4G026980Cucurbita pepo (Zucchini)cpecucB0598
CsaV3_4G026980Cucurbita pepo (Zucchini)cpecucB0771
CsaV3_4G026980Cucurbita pepo (Zucchini)cpecucB1066
CsaV3_4G026980Wild cucumber (PI 183967)cpicucB159
CsaV3_4G026980Wild cucumber (PI 183967)cpicucB348
CsaV3_4G026980Bottle gourd (USVL1VR-Ls)cuclsiB272
CsaV3_4G026980Bottle gourd (USVL1VR-Ls)cuclsiB298
CsaV3_4G026980Bottle gourd (USVL1VR-Ls)cuclsiB303
CsaV3_4G026980Melon (DHL92) v3.5.1cucmeB292
CsaV3_4G026980Melon (DHL92) v3.5.1cucmeB335
CsaV3_4G026980Melon (DHL92) v3.6.1cucmedB284
CsaV3_4G026980Melon (DHL92) v3.6.1cucmedB331
CsaV3_4G026980Watermelon (Charleston Gray)cucwcgB281
CsaV3_4G026980Watermelon (Charleston Gray)cucwcgB318
CsaV3_4G026980Watermelon (Charleston Gray)cucwcgB293
CsaV3_4G026980Watermelon (97103) v1cucwmB301
CsaV3_4G026980Watermelon (97103) v1cucwmB355
CsaV3_4G026980Watermelon (97103) v1cucwmB369
CsaV3_4G026980Watermelon (97103) v2cucwmbB275
CsaV3_4G026980Watermelon (97103) v2cucwmbB287
CsaV3_4G026980Watermelon (97103) v2cucwmbB307
CsaV3_4G026980Wax gourdcucwgoB366
CsaV3_4G026980Wax gourdcucwgoB397