CsaV3_4G025960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G025960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 15296417 .. 15297531 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATCTAATTTTCGACTATGTGAAAGGTGACATGATTCAATACGAATTTGTGTACATCCAAACTATCAATGTACTAAAAAATATATGCTTATATTTTAAAAATTTGACAAAAGAAAAGAATCTGATATCTTCGTTAGGCCAAATAGATACAAAAGATCACGCTTACACTAAAACAATAATTTAACACCAACAAAACAAATATAGTTAAAATTATTTTATTTTATTTTTGTTTTGAATATAATAACAACGATATAATTAAAATTGTAAAAAAATATTTATATTAAAAATGTAAAGAAAAATATCAAATATCTATAGAATTTTAATTTTGTCATTGAAGGGGAAAAATAGACCAAAAAGAAAAAAAGAAAAAAATAAAAGAAAATAAAAGAAAGTGTTACCATTTAATAGGCAAAAAATAAAAATAATAGTAAGCTTCTCAAGCTCCTTAATATTTTTGATTTGGTATAGTCCCTTCATCTTTTTGCACCCACGTTTCTTCCTCTCTCTTCCCCCGTGACATTGATTATTAACTATCATCTTCTTTCTTTCTTCCTTAGGGTTTCCAATGCGATTTCCACTCCTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGGTTTTATTCCTCCTTTTCTCTTTTTCTCTTTTCGTTTTCTACTACTTTTCTTTTTTATTCTTTTATTCCTCTGTTCTTTTTACGTATCATTTTCTTCCTTTGCTGCTTATTTGCTGTCAATTTGCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGTTGTTTCATCAGCTAGGGTTGTGGGTTTTCGTTATATGAGTAATGCGGTTATTAGTTGGGGTAAGCGGTAGTTATTATGATTTTAATTTTGTGTTGTTTTGGGCTTTTTTTTGGACTTGTAGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

mRNA sequence

ATGGAGGATCTAATTTTCGACTATGTGAAAGGTGACATGATTCAATACGAATTTGTGTACATCCAAACTATCAATGGTTTCCAATGCGATTTCCACTCCTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

Coding sequence (CDS)

ATGGAGGATCTAATTTTCGACTATGTGAAAGGTGACATGATTCAATACGAATTTGTGTACATCCAAACTATCAATGGTTTCCAATGCGATTTCCACTCCTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

Protein sequence

MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSISDFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQDFPCV
Homology
[Close]
BLAST of CsaV3_4G025960 vs. NCBI nr
Match: KGN54350.1 (hypothetical protein Csa_4G307920 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 2.3e-48
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFXXXXXXXXXXXXXXXXX 60
           MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFXXXXXXXXXXXXXXXXX
Sbjct: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120
           XXXXXXXXXXXXFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ
Sbjct: 61  XXXXXXXXXXXXFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120

Query: 121 DFPCV 126
           DFPCV
Sbjct: 121 DFPCV 125

[Close]
BLAST of CsaV3_4G025960 vs. TrEMBL
Match: tr|A0A0A0KXG8|A0A0A0KXG8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307920 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.5e-48
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFXXXXXXXXXXXXXXXXX 60
           MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFXXXXXXXXXXXXXXXXX
Sbjct: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120
           XXXXXXXXXXXXFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ
Sbjct: 61  XXXXXXXXXXXXFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120

Query: 121 DFPCV 126
           DFPCV
Sbjct: 121 DFPCV 125

The following BLAST results are available for this feature:
BLAST of CsaV3_4G025960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54350.12.3e-48100.00hypothetical protein Csa_4G307920 [Cucumis sativus][more]
BLAST of CsaV3_4G025960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G025960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G025960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXG8|A0A0A0KXG8_CUCSA1.5e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307920 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G025960.1CsaV3_4G025960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G025960CSPI04G15610Wild cucumber (PI 183967)cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G025960Wax gourdcucwgoB365
CsaV3_4G025960Wax gourdcucwgoB393
CsaV3_4G025960Wax gourdcucwgoB397
CsaV3_4G025960Cucumber (Chinese Long) v3cuccucB116
CsaV3_4G025960Cucumber (Chinese Long) v3cuccucB172
CsaV3_4G025960Cucumber (Chinese Long) v3cuccucB179
CsaV3_4G025960Silver-seed gourdcarcucB0021
CsaV3_4G025960Silver-seed gourdcarcucB0183
CsaV3_4G025960Silver-seed gourdcarcucB0592
CsaV3_4G025960Silver-seed gourdcarcucB0614
CsaV3_4G025960Silver-seed gourdcarcucB1042
CsaV3_4G025960Cucumber (Gy14) v2cgybcucB128
CsaV3_4G025960Cucumber (Gy14) v2cgybcucB171
CsaV3_4G025960Cucumber (Gy14) v2cgybcucB283
CsaV3_4G025960Cucumber (Gy14) v1cgycucB057
CsaV3_4G025960Cucumber (Gy14) v1cgycucB200
CsaV3_4G025960Cucumber (Gy14) v1cgycucB282
CsaV3_4G025960Cucurbita maxima (Rimu)cmacucB0301
CsaV3_4G025960Cucurbita maxima (Rimu)cmacucB0564
CsaV3_4G025960Cucurbita maxima (Rimu)cmacucB0797
CsaV3_4G025960Cucurbita maxima (Rimu)cmacucB0851
CsaV3_4G025960Cucurbita maxima (Rimu)cmacucB0988
CsaV3_4G025960Cucurbita maxima (Rimu)cmacucB1016
CsaV3_4G025960Cucurbita moschata (Rifu)cmocucB0294
CsaV3_4G025960Cucurbita moschata (Rifu)cmocucB0334
CsaV3_4G025960Cucurbita moschata (Rifu)cmocucB0550
CsaV3_4G025960Cucurbita moschata (Rifu)cmocucB0781
CsaV3_4G025960Cucurbita moschata (Rifu)cmocucB0838
CsaV3_4G025960Cucurbita moschata (Rifu)cmocucB0972
CsaV3_4G025960Cucurbita moschata (Rifu)cmocucB0999
CsaV3_4G025960Cucurbita pepo (Zucchini)cpecucB0075
CsaV3_4G025960Cucurbita pepo (Zucchini)cpecucB0509
CsaV3_4G025960Cucurbita pepo (Zucchini)cpecucB0611
CsaV3_4G025960Cucurbita pepo (Zucchini)cpecucB0771
CsaV3_4G025960Cucurbita pepo (Zucchini)cpecucB1066
CsaV3_4G025960Wild cucumber (PI 183967)cpicucB159
CsaV3_4G025960Wild cucumber (PI 183967)cpicucB348
CsaV3_4G025960Bottle gourd (USVL1VR-Ls)cuclsiB272
CsaV3_4G025960Bottle gourd (USVL1VR-Ls)cuclsiB298
CsaV3_4G025960Bottle gourd (USVL1VR-Ls)cuclsiB303
CsaV3_4G025960Melon (DHL92) v3.5.1cucmeB289
CsaV3_4G025960Melon (DHL92) v3.5.1cucmeB292
CsaV3_4G025960Melon (DHL92) v3.5.1cucmeB327
CsaV3_4G025960Melon (DHL92) v3.6.1cucmedB282
CsaV3_4G025960Melon (DHL92) v3.6.1cucmedB284
CsaV3_4G025960Melon (DHL92) v3.6.1cucmedB320
CsaV3_4G025960Watermelon (Charleston Gray)cucwcgB281
CsaV3_4G025960Watermelon (Charleston Gray)cucwcgB318
CsaV3_4G025960Watermelon (Charleston Gray)cucwcgB293
CsaV3_4G025960Watermelon (97103) v1cucwmB301
CsaV3_4G025960Watermelon (97103) v1cucwmB355
CsaV3_4G025960Watermelon (97103) v1cucwmB369
CsaV3_4G025960Watermelon (97103) v2cucwmbB275
CsaV3_4G025960Watermelon (97103) v2cucwmbB287
CsaV3_4G025960Watermelon (97103) v2cucwmbB307