CsaV3_4G023900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G023900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 13915372 .. 13915758 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAGAGGTCTCATAAGCCTCTCCAGCGGAAGTATCATATCTTCATGGTTCATTGTGGAGTTGAACACAACAAAAAATTGAAACTAAAACTGCTTGCACTTTATTTATTATTATTATTTTTTCTTGAACTCCAAATTCTGTTTTGTTTCAGCTTTCCCCAAAATGGATGCAATCAGATAGTCTTCAACCAAAGATTTGGTTTCTCAACAATCTTATCCATCCAAATTGTGTACATGCACCTTCACCGGAGAAGACAGGAAAATAATAGAATAGAATATTCATCTGCCGTTAGACAGGATAGTGAAGTTGGAGATCTTGGATTTTCCAAAGGATTAGCCATCAATGGTTATGGAGTTCCATTTCTTTTTGCACATCTAGTCTAA

mRNA sequence

ATGAAGCAGAGGTCTCATAAGCCTCTCCAGCGGAACTTTCCCCAAAATGGATGCAATCAGATAGTCTTCAACCAAAGATTTGGTTTCTCAACAATCTTATCCATCCAAATTGTGTACATGCACCTTCACCGGAGAAGACAGGAAAATAATAGAATAGAATATTCATCTGCCGTTAGACAGGATAGTGAAGTTGGAGATCTTGGATTTTCCAAAGGATTAGCCATCAATGGTTATGGAGTTCCATTTCTTTTTGCACATCTAGTCTAA

Coding sequence (CDS)

ATGAAGCAGAGGTCTCATAAGCCTCTCCAGCGGAACTTTCCCCAAAATGGATGCAATCAGATAGTCTTCAACCAAAGATTTGGTTTCTCAACAATCTTATCCATCCAAATTGTGTACATGCACCTTCACCGGAGAAGACAGGAAAATAATAGAATAGAATATTCATCTGCCGTTAGACAGGATAGTGAAGTTGGAGATCTTGGATTTTCCAAAGGATTAGCCATCAATGGTTATGGAGTTCCATTTCTTTTTGCACATCTAGTCTAA

Protein sequence

MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQDSEVGDLGFSKGLAINGYGVPFLFAHLV
Homology
[Close]
BLAST of CsaV3_4G023900 vs. NCBI nr
Match: KGN54135.1 (hypothetical protein Csa_4G287570 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.0e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ 60
          MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ
Sbjct: 1  MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ 60

Query: 61 DSEVGDLGFSKGLAINGYGVPFLFAHLV 89
          DSEVGDLGFSKGLAINGYGVPFLFAHLV
Sbjct: 61 DSEVGDLGFSKGLAINGYGVPFLFAHLV 88

[Close]
BLAST of CsaV3_4G023900 vs. TrEMBL
Match: tr|A0A0A0KWY4|A0A0A0KWY4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287570 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.8e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ 60
          MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ
Sbjct: 1  MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ 60

Query: 61 DSEVGDLGFSKGLAINGYGVPFLFAHLV 89
          DSEVGDLGFSKGLAINGYGVPFLFAHLV
Sbjct: 61 DSEVGDLGFSKGLAINGYGVPFLFAHLV 88

The following BLAST results are available for this feature:
BLAST of CsaV3_4G023900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54135.11.0e-42100.00hypothetical protein Csa_4G287570 [Cucumis sativus][more]
BLAST of CsaV3_4G023900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G023900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G023900 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWY4|A0A0A0KWY4_CUCSA6.8e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287570 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G023900.1CsaV3_4G023900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G023900CsGy4G013080Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G023900Watermelon (97103) v2cucwmbB293
CsaV3_4G023900Wax gourdcucwgoB396
CsaV3_4G023900Silver-seed gourdcarcucB0559
CsaV3_4G023900Silver-seed gourdcarcucB0960
CsaV3_4G023900Cucurbita maxima (Rimu)cmacucB0660
CsaV3_4G023900Cucurbita maxima (Rimu)cmacucB0726
CsaV3_4G023900Cucurbita moschata (Rifu)cmocucB0645
CsaV3_4G023900Cucurbita moschata (Rifu)cmocucB0713
CsaV3_4G023900Cucurbita pepo (Zucchini)cpecucB0346
CsaV3_4G023900Cucurbita pepo (Zucchini)cpecucB0908
CsaV3_4G023900Wild cucumber (PI 183967)cpicucB212
CsaV3_4G023900Bottle gourd (USVL1VR-Ls)cuclsiB269
CsaV3_4G023900Melon (DHL92) v3.5.1cucmeB294
CsaV3_4G023900Melon (DHL92) v3.6.1cucmedB286
CsaV3_4G023900Watermelon (Charleston Gray)cucwcgB305
CsaV3_4G023900Watermelon (97103) v1cucwmB364