CsaV3_4G022130 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G022130
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	60S ribosomal protein L39
Location	chr4 : 13252703 .. 13253729 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGGTGCTTTCGATTCTTACCTTCAATTGTCATTTACCTTGATTTTGTTAAGTTTCATAAACTTGAATTTTCTTAACGATCTACATTTGTATTTCCGCAACTACTGAAATTTAGTTTATGGGATACTTTTGTTTAATTATTGCTACACTCAAGATTGAAGCACTTTGGAATAGAGTGAATTTACCATAAAAAATACTAATAGATGACTTTTATTTCAAAAGATAAGATATGATCTTTAAAATTTTAACATTTCTAGTCCATTTGAAAAACATAGGTTCTCGAAAGTGCAAATGAATTCTGGAAAAATTCACGAACAAATTGTAGAGATATGTTGTAAGGGGTACATTTGGAAGATTTAGGATATTTTACAAGTACATGGCTGTGGAATACAAGATCAGACTATTGCAAACTATTATTCTTATTGAGGAAATAGAAAGAAGGTGAGAAATTCATCGCTCTAAATTAGAAAGTACATTTGGAGGATTTAGGATATTTTACAAGTAGATGGCTGTGGAATGCATGATCATATTATTGCATATTATTATTCTTACAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGGTTAATTCACGGATCAGTACTCTACTGATTCCTATGTCAAAGTCCTGATGAAAATTGAGTGTGCTGACTTCTTGAAACATTGCAATTTTGTGACACTAAAAACTTGTTAGTTGTTATAGTTAAAACATATAAGGTATATATTGACTACTGTATCAAAGTGTTCACACTTTGTTTCAGTAAATATAATCTTTTATGA

mRNA sequence

ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGTAAATATAATCTTTTATGA

Coding sequence (CDS)

ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGTAAATATAATCTTTTATGA

Protein sequence

MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHHIKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL

Homology

[Close]

BLAST of CsaV3_4G022130 vs. NCBI nr
Match: XP_011657167.1 (PREDICTED: 60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID 37
          MLSHKTFRMKKKL KKKR NRP PHWIRLR DNTID
Sbjct: 1  MLSHKTFRMKKKLLKKKRQNRPTPHWIRLRTDNTID 36

[Close]

BLAST of CsaV3_4G022130 vs. NCBI nr
Match: XP_011657256.1 (PREDICTED: 60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID 37
          MLSHKTFRMKKKLAKKKR NRP  +WIRLR DNTID
Sbjct: 1  MLSHKTFRMKKKLAKKKRQNRPTSNWIRLRTDNTID 36

[Close]

BLAST of CsaV3_4G022130 vs. NCBI nr
Match: XP_011656152.1 (PREDICTED: 60S ribosomal protein L39-1-like [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNT 35
          MLSHKTF MKKK AKKKR NRP PHWIRLRIDNT
Sbjct: 1  MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT 34

[Close]

BLAST of CsaV3_4G022130 vs. NCBI nr
Match: APR63714.1 (hypothetical protein [Populus tomentosa])

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLV 41
          M SHKTFR+KKKLAKK R NRP PHWIR+R DNTI  L V
Sbjct: 40 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTISFLKV 79

[Close]

BLAST of CsaV3_4G022130 vs. NCBI nr
Match: XP_004135586.1 (PREDICTED: 60S ribosomal protein L39 [Cucumis sativus] >XP_004145516.1 PREDICTED: 60S ribosomal protein L39 [Cucumis sativus] >XP_008445252.1 PREDICTED: 60S ribosomal protein L39 [Cucumis melo] >XP_008450567.1 PREDICTED: 60S ribosomal protein L39 [Cucumis melo] >XP_008450568.1 PREDICTED: 60S ribosomal protein L39 [Cucumis melo] >XP_008452877.1 PREDICTED: 60S ribosomal protein L39 [Cucumis melo] >XP_010540302.1 PREDICTED: 60S ribosomal protein L39 [Tarenaya hassleriana] >XP_010541585.1 PREDICTED: 60S ribosomal protein L39 [Tarenaya hassleriana] >XP_010546538.1 PREDICTED: 60S ribosomal protein L39 [Tarenaya hassleriana] >XP_010519648.1 PREDICTED: 60S ribosomal protein L39 [Tarenaya hassleriana] >XP_010525935.1 PREDICTED: 60S ribosomal protein L39 [Tarenaya hassleriana] >XP_010526234.1 PREDICTED: 60S ribosomal protein L39 isoform X1 [Tarenaya hassleriana] >XP_010526235.1 PREDICTED: 60S ribosomal protein L39 isoform X2 [Tarenaya hassleriana] >XP_011659662.1 PREDICTED: 60S ribosomal protein L39 [Cucumis sativus] >XP_011649840.1 PREDICTED: 60S ribosomal protein L39 [Cucumis sativus] >XP_022149767.1 60S ribosomal protein L39 [Momordica charantia] >XP_022135628.1 60S ribosomal protein L39 [Momordica charantia] >XP_022135629.1 60S ribosomal protein L39 [Momordica charantia] >XP_022936854.1 60S ribosomal protein L39 [Cucurbita moschata] >XP_022941352.1 60S ribosomal protein L39 [Cucurbita moschata] >XP_022951697.1 60S ribosomal protein L39 [Cucurbita moschata] >XP_022931559.1 60S ribosomal protein L39 [Cucurbita moschata] >XP_022931560.1 60S ribosomal protein L39 [Cucurbita moschata] >XP_022931561.1 60S ribosomal protein L39 [Cucurbita moschata] >XP_022976223.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_022981083.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_022989496.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_022989497.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_022989498.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_022996633.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_023002567.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_022968828.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_022968829.1 60S ribosomal protein L39 [Cucurbita maxima] >XP_023525759.1 60S ribosomal protein L39 [Cucurbita pepo subsp. pepo] >XP_023530147.1 60S ribosomal protein L39 [Cucurbita pepo subsp. pepo] >XP_023530148.1 60S ribosomal protein L39 [Cucurbita pepo subsp. pepo] >XP_023530149.1 60S ribosomal protein L39 [Cucurbita pepo subsp. pepo] >XP_023536041.1 60S ribosomal protein L39 [Cucurbita pepo subsp. pepo] >XP_023538028.1 60S ribosomal protein L39 [Cucurbita pepo subsp. pepo] >XP_023545687.1 60S ribosomal protein L39 [Cucurbita pepo subsp. pepo] >XP_010089945.2 60S ribosomal protein L39 [Morus notabilis] >XP_024025856.1 60S ribosomal protein L39 [Morus notabilis] >KGN55452.1 hypothetical protein Csa_4G652650 [Cucumis sativus] >KGN66024.1 hypothetical protein Csa_1G568530 [Cucumis sativus] >PON38089.1 Ribosomal protein [Parasponia andersonii] >PON99195.1 Ribosomal protein [Trema orientalis])

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. TAIR10
Match: AT4G31985.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-08
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. TAIR10
Match: AT3G02190.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP P+WIRLR DN I
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKI 35

[Close]

BLAST of CsaV3_4G022130 vs. TAIR10
Match: AT2G25210.1 (Ribosomal protein L39 family protein)

HSP 1 Score: 45.4 bits (106), Expect = 2.3e-05
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 9  MKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTI 28

[Close]

BLAST of CsaV3_4G022130 vs. Swiss-Prot
Match: sp|Q6KAJ8|RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. Swiss-Prot
Match: sp|P51426|RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. Swiss-Prot
Match: sp|P51425|RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. Swiss-Prot
Match: sp|Q5SMI4|RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTF++KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. Swiss-Prot
Match: sp|P51424|RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-07
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. TrEMBL
Match: tr|A0A1L6K4G8|A0A1L6K4G8_POPTO (Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLV 41
          M SHKTFR+KKKLAKK R NRP PHWIR+R DNTI  L V
Sbjct: 40 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTISFLKV 79

[Close]

BLAST of CsaV3_4G022130 vs. TrEMBL
Match: tr|A0A0A0LYE1|A0A0A0LYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. TrEMBL
Match: tr|A0A1S3BCZ7|A0A1S3BCZ7_CUCME (60S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. TrEMBL
Match: tr|A0A2P5FN20|A0A2P5FN20_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_050550 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsaV3_4G022130 vs. TrEMBL
Match: tr|A0A2P5AKY6|A0A2P5AKY6_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_347900 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 21 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 55

The following BLAST results are available for this feature:

BLAST of CsaV3_4G022130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657167.1	2.4e-08	88.89	PREDICTED: 60S ribosomal protein L39-like [Cucumis sativus]	[more]
XP_011657256.1	3.5e-07	86.11	PREDICTED: 60S ribosomal protein L39-like [Cucumis sativus]	[more]
XP_011656152.1	5.9e-07	88.24	PREDICTED: 60S ribosomal protein L39-1-like [Cucumis sativus]	[more]
APR63714.1	5.0e-06	75.00	hypothetical protein [Populus tomentosa]	[more]
XP_004135586.1	6.6e-06	82.86	PREDICTED: 60S ribosomal protein L39 [Cucumis sativus] >XP_004145516.1 PREDICTED...	[more]

BLAST of CsaV3_4G022130 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31985.1	5.0e-08	74.29	Ribosomal protein L39 family protein	[more]
AT3G02190.1	1.6e-06	68.57	Ribosomal protein L39 family protein	[more]
AT2G25210.1	2.3e-05	77.78	Ribosomal protein L39 family protein	[more]

BLAST of CsaV3_4G022130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6KAJ8\|RL391_ORYSJ	1.8e-07	77.14	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
sp\|P51426\|RL392_ORYSJ	1.8e-07	77.14	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
sp\|P51425\|RL39_MAIZE	1.8e-07	77.14	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]
sp\|Q5SMI4\|RL393_ORYSJ	5.3e-07	74.29	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
sp\|P51424\|RL391_ARATH	9.0e-07	74.29	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]

BLAST of CsaV3_4G022130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1L6K4G8\|A0A1L6K4G8_POPTO	3.3e-06	75.00	Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1	[more]
tr\|A0A0A0LYE1\|A0A0A0LYE1_CUCSA	4.4e-06	82.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1	[more]
tr\|A0A1S3BCZ7\|A0A1S3BCZ7_CUCME	4.4e-06	82.86	60S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1	[more]
tr\|A0A2P5FN20\|A0A2P5FN20_9ROSA	4.4e-06	82.86	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_050550 PE=3 SV=1	[more]
tr\|A0A2P5AKY6\|A0A2P5AKY6_9ROSA	4.4e-06	82.86	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_347900 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR000077	Ribosomal_L39
IPR023626	Ribosomal_L39e_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G022130.1	CsaV3_4G022130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	G3DSA:1.10.1620.10		coord: 1..38 e-value: 2.8E-14 score: 54.6
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	SSF48662	Ribosomal protein L39e	coord: 3..35
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 9..35 e-value: 2.0E-6 score: 27.2
IPR000077	Ribosomal protein L39e	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 3..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR19970:SF13	SUBFAMILY NOT NAMED	coord: 3..35
None	No IPR available	PRODOM	PD007914		coord: 1..35 e-value: 5.0E-5 score: 105.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G022130	Wax gourd	cucwgoB405
CsaV3_4G022130	Silver-seed gourd	carcucB0513
CsaV3_4G022130	Silver-seed gourd	carcucB0559
CsaV3_4G022130	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G022130	Cucumber (Gy14) v1	cgycucB231
CsaV3_4G022130	Cucurbita maxima (Rimu)	cmacucB0660
CsaV3_4G022130	Cucurbita maxima (Rimu)	cmacucB0726
CsaV3_4G022130	Cucurbita moschata (Rifu)	cmocucB0645
CsaV3_4G022130	Cucurbita moschata (Rifu)	cmocucB0713
CsaV3_4G022130	Cucurbita moschata (Rifu)	cmocucB1003
CsaV3_4G022130	Cucurbita pepo (Zucchini)	cpecucB0346
CsaV3_4G022130	Cucurbita pepo (Zucchini)	cpecucB0614
CsaV3_4G022130	Cucurbita pepo (Zucchini)	cpecucB0908
CsaV3_4G022130	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G022130	Wild cucumber (PI 183967)	cpicucB215
CsaV3_4G022130	Bottle gourd (USVL1VR-Ls)	cuclsiB284
CsaV3_4G022130	Melon (DHL92) v3.5.1	cucmeB294
CsaV3_4G022130	Melon (DHL92) v3.5.1	cucmeB344
CsaV3_4G022130	Watermelon (Charleston Gray)	cucwcgB305
CsaV3_4G022130	Watermelon (97103) v1	cucwmB364