CsaV3_4G022120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G022120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 13252182 .. 13252648 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTAGCGTTTCGAACGGATGTGCCGGGGTTTCCAAAAGATTGACTTCGGCGCGGGGGGTCCTTTGGGGTGGGCAGATGTCGACGACGACAATGGAAGCAAACGGTCGGAGTTGTGAATGGCTAGCGGCAGAGGGTTTCGGTGTGTGTGAGGGTTTTCGAATGGGTTTTTTCAAATGGAGGTGAGCGTTTCCAACGGATGGGCCGGGGTTTCCAGAAGATTGACTTCGCGCGCAGGGGGTCCTTTGGGGTGGGCAGTCGTTGTCGACGACAATGGAAGCAAACAGTCGGAGTTATGGACGGCCAGCAGCATAGTGTTTCGGTGTGTGGGGGGTTTTAAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCCAACGAATGGGCCGGGGTTTCCAAAAGATTGACTTCACGCGGGGGGTTCCTTTGGGGTGGGCAGACGTCGTCGACGACAATGGAAGCAAATAG

mRNA sequence

ATGGAGGTTAGCGTTTCGAACGGATGTGCCGGGGTTTCCAAAAGATTGACTTCGGCGCGGGGGGTCCTTTGGGGTGGGCAGATGTCGACGACGACAATGGAAGCAAACGGTCGGAGTTGTGAATGGCTAGCGGCAGAGGGTTTCGGGGGTCCTTTGGGGTGGGCAGTCGTTGTCGACGACAATGGAAGCAAACAGTCGGAGTTATGGACGGCCAGCAGCATAGTGTTTCGGTGTGTGGGGGGTTTTAAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCCAACGAATGGGCCGGGGTTTCCAAAAGATTGACTTCACGCGGGGGGTTCCTTTGGGGTGGGCAGACGTCGTCGACGACAATGGAAGCAAATAG

Coding sequence (CDS)

ATGGAGGTTAGCGTTTCGAACGGATGTGCCGGGGTTTCCAAAAGATTGACTTCGGCGCGGGGGGTCCTTTGGGGTGGGCAGATGTCGACGACGACAATGGAAGCAAACGGTCGGAGTTGTGAATGGCTAGCGGCAGAGGGTTTCGGGGGTCCTTTGGGGTGGGCAGTCGTTGTCGACGACAATGGAAGCAAACAGTCGGAGTTATGGACGGCCAGCAGCATAGTGTTTCGGTGTGTGGGGGGTTTTAAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCCAACGAATGGGCCGGGGTTTCCAAAAGATTGACTTCACGCGGGGGGTTCCTTTGGGGTGGGCAGACGTCGTCGACGACAATGGAAGCAAATAG

Protein sequence

MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDDNGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDNGSK

Homology

[Close]

BLAST of CsaV3_4G022120 vs. NCBI nr
Match: KGN53979.1 (hypothetical protein Csa_4G220860 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 6.3e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60
           MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD
Sbjct: 1   MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60

Query: 61  NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN 120
           NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN
Sbjct: 61  NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN 120

Query: 121 GSK 124
           GSK
Sbjct: 121 GSK 123

[Close]

BLAST of CsaV3_4G022120 vs. NCBI nr
Match: KGN47177.1 (hypothetical protein Csa_6G193630 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 5.8e-04
Identity = 35/77 (45.45%), Postives = 37/77 (48.05%), Query Frame = 0


Query: 1  MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60
          MEVSV NG A VSKRLTS                                PLGWA VVDD
Sbjct: 1  MEVSVLNGWAEVSKRLTSRA----------------------------ARPLGWADVVDD 49

Query: 61 NGSKQSELWTASSIVFR 78
          NGSK+SELWT+    FR
Sbjct: 61 NGSKRSELWTSGGRGFR 49

[Close]

BLAST of CsaV3_4G022120 vs. TrEMBL
Match: tr|A0A0A0KYT3|A0A0A0KYT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G220860 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 4.2e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60
           MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD
Sbjct: 1   MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60

Query: 61  NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN 120
           NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN
Sbjct: 61  NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN 120

Query: 121 GSK 124
           GSK
Sbjct: 121 GSK 123

[Close]

BLAST of CsaV3_4G022120 vs. TrEMBL
Match: tr|A0A0A0KFH7|A0A0A0KFH7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G193630 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-04
Identity = 35/77 (45.45%), Postives = 37/77 (48.05%), Query Frame = 0


Query: 1  MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60
          MEVSV NG A VSKRLTS                                PLGWA VVDD
Sbjct: 1  MEVSVLNGWAEVSKRLTSRA----------------------------ARPLGWADVVDD 49

Query: 61 NGSKQSELWTASSIVFR 78
          NGSK+SELWT+    FR
Sbjct: 61 NGSKRSELWTSGGRGFR 49

The following BLAST results are available for this feature:

BLAST of CsaV3_4G022120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53979.1	6.3e-67	100.00	hypothetical protein Csa_4G220860 [Cucumis sativus]	[more]
KGN47177.1	5.8e-04	45.45	hypothetical protein Csa_6G193630 [Cucumis sativus]	[more]

BLAST of CsaV3_4G022120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G022120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G022120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYT3\|A0A0A0KYT3_CUCSA	4.2e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G220860 PE=4 SV=1	[more]
tr\|A0A0A0KFH7\|A0A0A0KFH7_CUCSA	3.9e-04	45.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G193630 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G022120.1	CsaV3_4G022120.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G022120	CSPI04G11990	Wild cucumber (PI 183967)	cpicucB215

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G022120	Silver-seed gourd	carcucB0513
CsaV3_4G022120	Silver-seed gourd	carcucB0559
CsaV3_4G022120	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G022120	Cucumber (Gy14) v1	cgycucB231
CsaV3_4G022120	Cucurbita maxima (Rimu)	cmacucB0660
CsaV3_4G022120	Cucurbita maxima (Rimu)	cmacucB0726
CsaV3_4G022120	Cucurbita moschata (Rifu)	cmocucB0645
CsaV3_4G022120	Cucurbita moschata (Rifu)	cmocucB0713
CsaV3_4G022120	Cucurbita moschata (Rifu)	cmocucB1003
CsaV3_4G022120	Cucurbita pepo (Zucchini)	cpecucB0346
CsaV3_4G022120	Cucurbita pepo (Zucchini)	cpecucB0614
CsaV3_4G022120	Cucurbita pepo (Zucchini)	cpecucB0908
CsaV3_4G022120	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G022120	Bottle gourd (USVL1VR-Ls)	cuclsiB284
CsaV3_4G022120	Melon (DHL92) v3.5.1	cucmeB294
CsaV3_4G022120	Melon (DHL92) v3.5.1	cucmeB344
CsaV3_4G022120	Watermelon (Charleston Gray)	cucwcgB305
CsaV3_4G022120	Watermelon (97103) v1	cucwmB364
CsaV3_4G022120	Wax gourd	cucwgoB405