CsaV3_4G022070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G022070
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 13178535 .. 13180672 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGGGGTTGAAAAAGACCTTAGAGATGTTGAGTCTTTGTTAGGTGTTTTGTTTCTCTTCAGACCCCTCCCTTTTACAAGCTTTGTGTTTTTCGATGCATATGTTTTCTTCAGTATATATATACTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAAATCAATGGTAACCTAAAGAATAATTGCATGGAGGGAGACTTTGAAGGAAAATTAACCCCAAGTAAGTTTCAAAATCAACAAAAGAAATTTCGTTTTGGTTATGGTATCACCATATGATATTATCATTCTTCATTCTGTAGCATCTCTTCTTCTCGTTCTTTTTCCTTTTGCATTTCTCCTTCCACTTTTTTCCATTTTTCCCTTCTTTTTCTACGTTTCTTCTTGCTTTTTATATTATGAATTTTTCTGACATCAGATAGCGAACATATGACATAAAACATAGATGGTAGAGTGTAAAGCACTGGAGTGAACTTTTGAATGAGAGTATAGATGATGAGTATGTGCTTATAAAGCATATAGCATCAACTATGGAAGAAAGTTGTGAGTAAATTCATGTGTGTAAACAGAGGACCATTTTCCCTCTATATCTTAATGTTGACAACTTTTCGTTCGGGCCTCTAAATGAAGTAATTGGTAAAAGAAAAAGAAAAAGAAAAAGAAAATCCTATAACGAAATTTGAGTTTAAGAAGCAAAAAGAGGTTAGGTAACATAACCAAAAATAAGTTGGGCCCCAGATCAAACAGAATCCCCTTCAATAGAAGAGAGAAAAAGAAAAAGGGAATTAGTTAACAGCTTCCCACATGATTTTTCCATTTGATCCCTACCAACCAATTTGGATCAATATTATACACAAAACTCTCCACATTTCTTTCCATCCACGACCCCATCACATGGCCTTAAAAACCAAACTAAATCTCTCTCTTAGTCTCTTCAAAAAAGTCTATATTCTAAACCACAAAATATGCAATTTGGTACAGAGATGGGTGATATTGCTTACTAGTCTCAAGTCAAACCATTTTTAAACATCTCCAAAGGACACACTCATAAATAGGAAATGTTATTTTTAAAAACCCTTCTTATAACTAGGGATCACAAATCACAACCAACCAAGTGTCACAGTTTTCTGTCTATAAATACAAGACTTTGATCTTCATTTCCATTGCACACAGAAAGGAAGAAGAAAAAAGAAAAAAAAAAAAGAAGAAGAAGAAAGAAAACCTTTAAGAAACTCTCTCTTCTTTTGGGTAAAAGTTAGGGTTTTTTAGGTTTGTGGTCAGCCATGGCTGGGCTCCAGTACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCATCTTCTTCTTCTTCTTCCTCAGAAGCCATCAACAGGGCAAGTGTGACCTTCAAAACCCCTCTAAGAGGCAATAAAGGTGATCAAGAAGATATTGATCATGGTGATGAACCCAAGAGTCGTTTGATGATCTCTCAAAAGGTTGATAGATCACCATTGATTCTCAAGCATCAAATCAAGAGTACTTCTTCTTCAACTTTCTAAACATTTATCAACCCCATGATCAGTTGGTTTATCATGGGCTAGCTCTACTCTTCAAAAGGAAAAAAAAAAATGTTTGCTTTTTGTTCTTTTTCCCTCTTTGATTCTTTTGTTTTTCTACGGAAGTACTTCGTGGCTTTTTTTAATAGTTTTCGAAAGTTTTTATTATGAGTATGTGAATAAGTTTCATTCTCTATATAATGGTAAAGAGGATGTTTCGATTGCCATTTTGGAGGGGATTGAAAAACTCTTGAGGCCGTTTTGGAATTGCCAATGGCTGTATGATCCATATGAGTCATAAAATAATGAACAATTATTATTTATTATTTAACACTTTATATATATTTTAAAAAAAATAACTATTGTAAATGGTCAAATTTGCTAAAAATATTTACAAGGTATTGATAGATACTAACAGTGTCAATTCCTTTGTTCAATTATGCTGTTCTTCTTTTTATAGTCTTCCTTCTAGATTGATATTATTGAAGCACCATTTGATGACTACTGTATTTAGTTTTTCTTTTCAATTTTTAAGAGTTAAGTTCATGTATTGTTATCCACCGTATACCAATGTTTTATAAAATCGAAACGAATTGCAA

mRNA sequence

ATGGCTGGGCTCCAGTACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCATCTTCTTCTTCTTCTTCCTCAGAAGCCATCAACAGGGCAAGTGTGACCTTCAAAACCCCTCTAAGAGGCAATAAAGGTGATCAAGAAGATATTGATCATGGTGATGAACCCAAGAGTCGTTTGATGATCTCTCAAAAGGTTGATAGATCACCATTGATTCTCAAGCATCAAATCAAGAGTACTTCTTCTTCAACTTTCTAA

Coding sequence (CDS)

ATGGCTGGGCTCCAGTACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCATCTTCTTCTTCTTCTTCCTCAGAAGCCATCAACAGGGCAAGTGTGACCTTCAAAACCCCTCTAAGAGGCAATAAAGGTGATCAAGAAGATATTGATCATGGTGATGAACCCAAGAGTCGTTTGATGATCTCTCAAAAGGTTGATAGATCACCATTGATTCTCAAGCATCAAATCAAGAGTACTTCTTCTTCAACTTTCTAA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLMISQKVDRSPLILKHQIKSTSSSTF
Homology
[Close]
BLAST of CsaV3_4G022070 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_4G218340 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.9e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

Query: 61 ISQKVDRSPLILKHQIKSTSSSTF 85
          ISQKVDRSPLILKHQIKSTSSSTF
Sbjct: 61 ISQKVDRSPLILKHQIKSTSSSTF 84

[Close]
BLAST of CsaV3_4G022070 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKT LRGNKG +EDIDHGDE KSRL 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKG-EEDIDHGDERKSRLF 60

Query: 61 ISQKVDRSPLILKHQIKSTSSS 83
            +  DRSPLILKHQ KSTSS+
Sbjct: 61 SQKVADRSPLILKHQSKSTSST 81

[Close]
BLAST of CsaV3_4G022070 vs. TrEMBL
Match: tr|A0A0A0KWJ2|A0A0A0KWJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

Query: 61 ISQKVDRSPLILKHQIKSTSSSTF 85
          ISQKVDRSPLILKHQIKSTSSSTF
Sbjct: 61 ISQKVDRSPLILKHQIKSTSSSTF 84

[Close]
BLAST of CsaV3_4G022070 vs. TrEMBL
Match: tr|E5GC02|E5GC02_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKT LRGNKG +EDIDHGDE KSRL 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKG-EEDIDHGDERKSRLF 60

Query: 61 ISQKVDRSPLILKHQIKSTSSS 83
            +  DRSPLILKHQ KSTSS+
Sbjct: 61 SQKVADRSPLILKHQSKSTSST 81

The following BLAST results are available for this feature:
BLAST of CsaV3_4G022070 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53975.11.9e-38100.00hypothetical protein Csa_4G218340 [Cucumis sativus][more]
ADN34001.13.0e-2885.37hypothetical protein [Cucumis melo subsp. melo][more]
BLAST of CsaV3_4G022070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G022070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G022070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWJ2|A0A0A0KWJ2_CUCSA1.3e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1[more]
tr|E5GC02|E5GC02_CUCME2.0e-2885.37Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G022070.1CsaV3_4G022070.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..56

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G022070CSPI04G11930Wild cucumber (PI 183967)cpicucB215
CsaV3_4G022070MELO3C020745Melon (DHL92) v3.5.1cucmeB344
CsaV3_4G022070Lsi01G018040Bottle gourd (USVL1VR-Ls)cuclsiB284
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G022070Silver-seed gourdcarcucB0513
CsaV3_4G022070Silver-seed gourdcarcucB0559
CsaV3_4G022070Cucumber (Gy14) v2cgybcucB171
CsaV3_4G022070Cucumber (Gy14) v1cgycucB231
CsaV3_4G022070Cucurbita maxima (Rimu)cmacucB0660
CsaV3_4G022070Cucurbita maxima (Rimu)cmacucB0726
CsaV3_4G022070Cucurbita moschata (Rifu)cmocucB0645
CsaV3_4G022070Cucurbita moschata (Rifu)cmocucB0713
CsaV3_4G022070Cucurbita moschata (Rifu)cmocucB1003
CsaV3_4G022070Cucurbita pepo (Zucchini)cpecucB0346
CsaV3_4G022070Cucurbita pepo (Zucchini)cpecucB0614
CsaV3_4G022070Cucurbita pepo (Zucchini)cpecucB0908
CsaV3_4G022070Wild cucumber (PI 183967)cpicucB212
CsaV3_4G022070Melon (DHL92) v3.5.1cucmeB294
CsaV3_4G022070Watermelon (Charleston Gray)cucwcgB305
CsaV3_4G022070Watermelon (97103) v1cucwmB364
CsaV3_4G022070Wax gourdcucwgoB405