CsaV3_4G016010 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G016010
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC104235718
Locationchr4 : 10595390 .. 10595977 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTGAACATAAAAAAAAGGGAAATATTTTACCGCAAGGAACTTGATTCCTATGGGAAAGTTCGTGGAGATGAGGAATTGGATAGAGGGCGAGGATGGGGATGGAAAGTGGCATCCTTGGTTCCACCTCACCCCATGAACATCTTTACGCTTAAGGCTCTAGGTACCCCAGTTTTTTAGTATTCGACATATCCGGTGGATGCCAAGGCATGGTTCAACATGCTAGAAAAGTGCTTTAAGGTAGTGGATTGTCTTGAAGAGAGAAAGGTTAGGTTAGCCATTTTCCTACTTTAGAAGGAGGTAGAGGGATGGTGAAAGTCCATTCTAGTGAGACGCAATGACGCCAGTTCACTAGGTTCACAGACCTCCAGAGACATATTTAAGGATAAGTACTATCTGAGTGCTTACTGTGAAGTGAAAATAGATGAGTTTCTTATCTTAGGGAAAGGGTCACTATCAGTGGTCGAGTATGAAAGTAAGTATACTGCGCTTTCTTGGTATGTTGAGGTTATAGTAGCATCTGTGAGTGATAGATGTAGAGGTTTGAGAGGGGTTTATAGTAGAAGATCTGTACCCCAGTTGTAG

mRNA sequence

ATGAGATTGAACATAAAAAAAAGGGAAATATTTTACCGCAAGGAACTTGATTCCTATGGGAAAGTTCGTGGAGATGAGGAATTGGATAGAGGGCGAGGATGGGGATGGAAAGTGGCATCCTTGTATTCGACATATCCGGTGGATGCCAAGGCATGGTTCAACATGCTAGAAAAGTGCTTTAAGGTAGTGGATTGTCTTGAAGAGAGAAAGGTTAGACGCAATGACGCCAGTTCACTAGGTTCACAGACCTCCAGAGACATATTTAAGGATAAGTACTATCTGAGTGCTTACTGTGAAGTGAAAATAGATGAGTTTCTTATCTTAGGGAAAGGGTCACTATCAGTGGTCGAGTATGAAAGTAAGTATACTGCGCTTTCTTGGTATGTTGAGGTTATAGTAGCATCTGTGAGTGATAGATGTAGAGGTTTGAGAGGGGTTTATAGTAGAAGATCTGTACCCCAGTTGTAG

Coding sequence (CDS)

ATGAGATTGAACATAAAAAAAAGGGAAATATTTTACCGCAAGGAACTTGATTCCTATGGGAAAGTTCGTGGAGATGAGGAATTGGATAGAGGGCGAGGATGGGGATGGAAAGTGGCATCCTTGTATTCGACATATCCGGTGGATGCCAAGGCATGGTTCAACATGCTAGAAAAGTGCTTTAAGGTAGTGGATTGTCTTGAAGAGAGAAAGGTTAGACGCAATGACGCCAGTTCACTAGGTTCACAGACCTCCAGAGACATATTTAAGGATAAGTACTATCTGAGTGCTTACTGTGAAGTGAAAATAGATGAGTTTCTTATCTTAGGGAAAGGGTCACTATCAGTGGTCGAGTATGAAAGTAAGTATACTGCGCTTTCTTGGTATGTTGAGGTTATAGTAGCATCTGTGAGTGATAGATGTAGAGGTTTGAGAGGGGTTTATAGTAGAAGATCTGTACCCCAGTTGTAG

Protein sequence

MRLNIKKREIFYRKELDSYGKVRGDEELDRGRGWGWKVASLYSTYPVDAKAWFNMLEKCFKVVDCLEERKVRRNDASSLGSQTSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRCRGLRGVYSRRSVPQL
Homology
[Close]
BLAST of CsaV3_4G016010 vs. NCBI nr
Match: KGN54002.1 (hypothetical protein Csa_4G255930 [Cucumis sativus])

HSP 1 Score: 318.2 bits (814), Expect = 1.6e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MRLNIKKREIFYRKELDSYGKVRGDEELDRGRGWGWKVASLYSTYPVDAKAWFNMLEKCF 60
           MRLNIKKREIFYRKELDSYGKVRGDEELDRGRGWGWKVASLYSTYPVDAKAWFNMLEKCF
Sbjct: 1   MRLNIKKREIFYRKELDSYGKVRGDEELDRGRGWGWKVASLYSTYPVDAKAWFNMLEKCF 60

Query: 61  KVVDCLEERKVRRNDASSLGSQTSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYES 120
           KVVDCLEERKVRRNDASSLGSQTSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYES
Sbjct: 61  KVVDCLEERKVRRNDASSLGSQTSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYES 120

Query: 121 KYTALSWYVEVIVASVSDRCRGLRGVYSRRSVPQL 156
           KYTALSWYVEVIVASVSDRCRGLRGVYSRRSVPQL
Sbjct: 121 KYTALSWYVEVIVASVSDRCRGLRGVYSRRSVPQL 155

[Close]
BLAST of CsaV3_4G016010 vs. NCBI nr
Match: XP_016901385.1 (PREDICTED: uncharacterized protein LOC107991239 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 66/119 (55.46%), Postives = 76/119 (63.87%), Query Frame = 0 

Query: 43  STYPVDAKAWFNMLEKCFKVVDCLEERKVR--------------------RNDASSLGSQ 102
           ST P DA+ W NMLEKCF V+ C +ERKVR                    RNDA +L  Q
Sbjct: 18  STDPADAEVWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWWKSIIVKRNDACTLDWQ 77

Query: 103 TSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRCR 142
           T R IF++KYY + YCE K DEFL L +GSLS+VEYE KYT LS Y +VIVAS SDRCR
Sbjct: 78  TFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSMVEYERKYTELSRYAKVIVASESDRCR 136

[Close]
BLAST of CsaV3_4G016010 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 3.2e-23
Identity = 64/119 (53.78%), Postives = 75/119 (63.03%), Query Frame = 0 

Query: 43  STYPVDAKAWFNMLEKCFKVVDCLEERKVR--------------------RNDASSLGSQ 102
           ST P DA+ W NMLEKCF V+ C +E+KVR                    RNDA +L  Q
Sbjct: 80  STDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGWLKSIIASRNDARTLYWQ 139

Query: 103 TSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRCR 142
           T R IF++KYY + YCE K DEF+ L +GSL V EYE KYT LS YVE+IVAS SDRCR
Sbjct: 140 TFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYTELSRYVEMIVASESDRCR 198

[Close]
BLAST of CsaV3_4G016010 vs. NCBI nr
Match: XP_008448403.1 (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 7.1e-23
Identity = 67/126 (53.17%), Postives = 78/126 (61.90%), Query Frame = 0 

Query: 43  STYPVDAKAWFNMLEKCFKVVDCLEERKV--------------------RRNDASSLGSQ 102
           ST P +A+ W NMLEKCF V++C ++RKV                    RRNDA +L  Q
Sbjct: 80  STDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAEGWWKSIIARRNDARTLDWQ 139

Query: 103 TSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRC-- 145
           T R IF++KYY + YCE K DEF  L +GSLSV EYE KYT LS YVEVIVA  SDRC  
Sbjct: 140 TFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYTELSRYVEVIVAYESDRCCR 199

[Close]
BLAST of CsaV3_4G016010 vs. NCBI nr
Match: XP_008456815.1 (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-22
Identity = 64/119 (53.78%), Postives = 73/119 (61.34%), Query Frame = 0 

Query: 43  STYPVDAKAWFNMLEKCFKVVDCLEERKVRR--------------------NDASSLGSQ 102
           ST   DA AW NMLEKCF V+ C +ERKVR                     NDA +L  Q
Sbjct: 18  STDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWWKSIIARCNDARTLDWQ 77

Query: 103 TSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRCR 142
           T R IF++KYY + YCE K DEFL L +GSLSV EYE KYT LS Y E+IVAS S+RCR
Sbjct: 78  TFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSVAEYEMKYTELSRYAEMIVASESERCR 136

[Close]
BLAST of CsaV3_4G016010 vs. TrEMBL
Match: tr|A0A0A0L0A4|A0A0A0L0A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G255930 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.1e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MRLNIKKREIFYRKELDSYGKVRGDEELDRGRGWGWKVASLYSTYPVDAKAWFNMLEKCF 60
           MRLNIKKREIFYRKELDSYGKVRGDEELDRGRGWGWKVASLYSTYPVDAKAWFNMLEKCF
Sbjct: 1   MRLNIKKREIFYRKELDSYGKVRGDEELDRGRGWGWKVASLYSTYPVDAKAWFNMLEKCF 60

Query: 61  KVVDCLEERKVRRNDASSLGSQTSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYES 120
           KVVDCLEERKVRRNDASSLGSQTSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYES
Sbjct: 61  KVVDCLEERKVRRNDASSLGSQTSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYES 120

Query: 121 KYTALSWYVEVIVASVSDRCRGLRGVYSRRSVPQL 156
           KYTALSWYVEVIVASVSDRCRGLRGVYSRRSVPQL
Sbjct: 121 KYTALSWYVEVIVASVSDRCRGLRGVYSRRSVPQL 155

[Close]
BLAST of CsaV3_4G016010 vs. TrEMBL
Match: tr|A0A1S4E079|A0A1S4E079_CUCME (uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 66/119 (55.46%), Postives = 76/119 (63.87%), Query Frame = 0 

Query: 43  STYPVDAKAWFNMLEKCFKVVDCLEERKVR--------------------RNDASSLGSQ 102
           ST P DA+ W NMLEKCF V+ C +ERKVR                    RNDA +L  Q
Sbjct: 18  STDPADAEVWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWWKSIIVKRNDACTLDWQ 77

Query: 103 TSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRCR 142
           T R IF++KYY + YCE K DEFL L +GSLS+VEYE KYT LS Y +VIVAS SDRCR
Sbjct: 78  TFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSMVEYERKYTELSRYAKVIVASESDRCR 136

[Close]
BLAST of CsaV3_4G016010 vs. TrEMBL
Match: tr|A0A1S4DV40|A0A1S4DV40_CUCME (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-23
Identity = 64/119 (53.78%), Postives = 75/119 (63.03%), Query Frame = 0 

Query: 43  STYPVDAKAWFNMLEKCFKVVDCLEERKVR--------------------RNDASSLGSQ 102
           ST P DA+ W NMLEKCF V+ C +E+KVR                    RNDA +L  Q
Sbjct: 80  STDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGWLKSIIASRNDARTLYWQ 139

Query: 103 TSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRCR 142
           T R IF++KYY + YCE K DEF+ L +GSL V EYE KYT LS YVE+IVAS SDRCR
Sbjct: 140 TFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYTELSRYVEMIVASESDRCR 198

[Close]
BLAST of CsaV3_4G016010 vs. TrEMBL
Match: tr|A0A1S3BJ07|A0A1S3BJ07_CUCME (uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.7e-23
Identity = 67/126 (53.17%), Postives = 78/126 (61.90%), Query Frame = 0 

Query: 43  STYPVDAKAWFNMLEKCFKVVDCLEERKV--------------------RRNDASSLGSQ 102
           ST P +A+ W NMLEKCF V++C ++RKV                    RRNDA +L  Q
Sbjct: 80  STDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAEGWWKSIIARRNDARTLDWQ 139

Query: 103 TSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRC-- 145
           T R IF++KYY + YCE K DEF  L +GSLSV EYE KYT LS YVEVIVA  SDRC  
Sbjct: 140 TFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYTELSRYVEVIVAYESDRCCR 199

[Close]
BLAST of CsaV3_4G016010 vs. TrEMBL
Match: tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME (uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-22
Identity = 64/119 (53.78%), Postives = 73/119 (61.34%), Query Frame = 0 

Query: 43  STYPVDAKAWFNMLEKCFKVVDCLEERKVRR--------------------NDASSLGSQ 102
           ST   DA AW NMLEKCF V+ C +ERKVR                     NDA +L  Q
Sbjct: 18  STDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWWKSIIARCNDARTLDWQ 77

Query: 103 TSRDIFKDKYYLSAYCEVKIDEFLILGKGSLSVVEYESKYTALSWYVEVIVASVSDRCR 142
           T R IF++KYY + YCE K DEFL L +GSLSV EYE KYT LS Y E+IVAS S+RCR
Sbjct: 78  TFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSVAEYEMKYTELSRYAEMIVASESERCR 136

The following BLAST results are available for this feature:
BLAST of CsaV3_4G016010 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54002.11.6e-83100.00hypothetical protein Csa_4G255930 [Cucumis sativus][more]
XP_016901385.12.2e-2455.46PREDICTED: uncharacterized protein LOC107991239 [Cucumis melo][more]
XP_016899851.13.2e-2353.78PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
XP_008448403.17.1e-2353.17PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
XP_008456815.13.5e-2253.78PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
BLAST of CsaV3_4G016010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G016010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G016010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0A4|A0A0A0L0A4_CUCSA1.1e-83100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G255930 PE=4 SV=1[more]
tr|A0A1S4E079|A0A1S4E079_CUCME1.5e-2455.46uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=... [more]
tr|A0A1S4DV40|A0A1S4DV40_CUCME2.1e-2353.78uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=... [more]
tr|A0A1S3BJ07|A0A1S3BJ07_CUCME4.7e-2353.17uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=... [more]
tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME2.3e-2253.78uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G016010.1CsaV3_4G016010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G016010Cucumber (Gy14) v2cgybcucB171
CsaV3_4G016010Wild cucumber (PI 183967)cpicucB216