CsaV3_4G015990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G015990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 10582706 .. 10583053 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGAATAAAATAAAATGTAACGAGAAGAAAAGAAGAGGAAAAAAGAAAAGGCTAATAAGCAAGGCAAGGAAGGAGAATAGTGTGCTTCCAGTGGAAAACACTTCTTTGCTTGAGGTTGATTTTAAAGGTTTAGCAAAAAGGACCCAAGGAAGTCTAACTAAAGAAATTTGGGACCTTGGAAGAAGAAATCAAGAAGTAGAGTTGGAGATAAAAGTGAATGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGAGACAGAAATAATTTGTTGGAGGAGGAAGTGTCCATCTGCAATAAGGGAAGACAAAAAATACAAGCAGAAAGCGCTTGTAGGCACACATAG

mRNA sequence

ATGGAAAGGAATAAAATAAAATGTAACGAGAAGAAAAGAAGAGGAAAAAAGAAAAGGCTAATAAGCAAGGCAAGGAAGGAGAATAGTGTGCTTCCAGTGGAAAACACTTCTTTGCTTGAGGTTGATTTTAAAGGTTTAGCAAAAAGGACCCAAGGAAGTCTAACTAAAGAAATTTGGGACCTTGGAAGAAGAAATCAAGAAGTAGAGTTGGAGATAAAAGTGAATGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGAGACAGAAATAATTTGTTGGAGGAGGAAGTGTCCATCTGCAATAAGGGAAGACAAAAAATACAAGCAGAAAGCGCTTGTAGGCACACATAG

Coding sequence (CDS)

ATGGAAAGGAATAAAATAAAATGTAACGAGAAGAAAAGAAGAGGAAAAAAGAAAAGGCTAATAAGCAAGGCAAGGAAGGAGAATAGTGTGCTTCCAGTGGAAAACACTTCTTTGCTTGAGGTTGATTTTAAAGGTTTAGCAAAAAGGACCCAAGGAAGTCTAACTAAAGAAATTTGGGACCTTGGAAGAAGAAATCAAGAAGTAGAGTTGGAGATAAAAGTGAATGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGAGACAGAAATAATTTGTTGGAGGAGGAAGTGTCCATCTGCAATAAGGGAAGACAAAAAATACAAGCAGAAAGCGCTTGTAGGCACACATAG

Protein sequence

MERNKIKCNEKKRRGKKKRLISKARKENSVLPVENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLLEEEVSICNKGRQKIQAESACRHT
Homology
[Close]
BLAST of CsaV3_4G015990 vs. NCBI nr
Match: KGN54001.1 (hypothetical protein Csa_4G255430 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.7e-53
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MERNKIKCNEKKRRGKKKRLISKARKENSVLPVENTSLLEVDFKGLAKRTQGSLTKEIWD 60
           MERNKIKCNEKKRRGKKKRLISKARKENSVLPVENTSLLEVDFKGLAKRTQGSLTKEIWD
Sbjct: 1   MERNKIKCNEKKRRGKKKRLISKARKENSVLPVENTSLLEVDFKGLAKRTQGSLTKEIWD 60

Query: 61  LGRRNQEVELEIKVNEEATKEFEKERDRNNLLEEEVSICNKGRQKIQAESACRHT 116
           LGRRNQEVELEIKVNEEATKEFEKERDRNNLLEEEVSICNKGRQKIQAESACRHT
Sbjct: 61  LGRRNQEVELEIKVNEEATKEFEKERDRNNLLEEEVSICNKGRQKIQAESACRHT 115

[Close]
BLAST of CsaV3_4G015990 vs. NCBI nr
Match: KGN57829.1 (hypothetical protein Csa_3G335350 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 8.4e-05
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 33  VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLL 92
           ++NTSL + DFKGLA+ TQ   TKEIW L  R +    + KV EE  +EFEK   RN L 
Sbjct: 1   MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60

Query: 93  EEEVSICNKGRQ 105
           +E+VS C K R+
Sbjct: 61  KEKVSKCKKRRR 69

[Close]
BLAST of CsaV3_4G015990 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 33  VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLL 92
           +E TS  + DF GLA RT    TKEI    RR +E + E KV ++  +EFEKE+ RN L 
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 93  EEEVSICNKGRQKIQAES 111
           EE+V  C K   ++ + +
Sbjct: 61  EEKVPNCKKEEGQVYSRT 78

[Close]
BLAST of CsaV3_4G015990 vs. NCBI nr
Match: KGN49676.1 (hypothetical protein Csa_5G057130 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 4.2e-04
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 33 VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKV 75
          + NTSLLE DFKGLA R Q    KEIW  GRR++E+ELE KV
Sbjct: 1  MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKV 42

[Close]
BLAST of CsaV3_4G015990 vs. TrEMBL
Match: tr|A0A0A0L1L9|A0A0A0L1L9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G255430 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-53
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MERNKIKCNEKKRRGKKKRLISKARKENSVLPVENTSLLEVDFKGLAKRTQGSLTKEIWD 60
           MERNKIKCNEKKRRGKKKRLISKARKENSVLPVENTSLLEVDFKGLAKRTQGSLTKEIWD
Sbjct: 1   MERNKIKCNEKKRRGKKKRLISKARKENSVLPVENTSLLEVDFKGLAKRTQGSLTKEIWD 60

Query: 61  LGRRNQEVELEIKVNEEATKEFEKERDRNNLLEEEVSICNKGRQKIQAESACRHT 116
           LGRRNQEVELEIKVNEEATKEFEKERDRNNLLEEEVSICNKGRQKIQAESACRHT
Sbjct: 61  LGRRNQEVELEIKVNEEATKEFEKERDRNNLLEEEVSICNKGRQKIQAESACRHT 115

[Close]
BLAST of CsaV3_4G015990 vs. TrEMBL
Match: tr|A0A0A0LA28|A0A0A0LA28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G335350 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.6e-05
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 33  VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLL 92
           ++NTSL + DFKGLA+ TQ   TKEIW L  R +    + KV EE  +EFEK   RN L 
Sbjct: 1   MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60

Query: 93  EEEVSICNKGRQ 105
           +E+VS C K R+
Sbjct: 61  KEKVSKCKKRRR 69

[Close]
BLAST of CsaV3_4G015990 vs. TrEMBL
Match: tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 33  VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLL 92
           +E TS  + DF GLA RT    TKEI    RR +E + E KV ++  +EFEKE+ RN L 
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 93  EEEVSICNKGRQKIQAES 111
           EE+V  C K   ++ + +
Sbjct: 61  EEKVPNCKKEEGQVYSRT 78

[Close]
BLAST of CsaV3_4G015990 vs. TrEMBL
Match: tr|A0A0A0KPM1|A0A0A0KPM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G057130 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 33 VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKV 75
          + NTSLLE DFKGLA R Q    KEIW  GRR++E+ELE KV
Sbjct: 1  MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKV 42

The following BLAST results are available for this feature:
BLAST of CsaV3_4G015990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54001.13.7e-53100.00hypothetical protein Csa_4G255430 [Cucumis sativus][more]
KGN57829.18.4e-0550.00hypothetical protein Csa_3G335350 [Cucumis sativus][more]
KGN65003.13.2e-0442.31hypothetical protein Csa_1G173720 [Cucumis sativus][more]
KGN49676.14.2e-0464.29hypothetical protein Csa_5G057130 [Cucumis sativus][more]
BLAST of CsaV3_4G015990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G015990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G015990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1L9|A0A0A0L1L9_CUCSA2.5e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G255430 PE=4 SV=1[more]
tr|A0A0A0LA28|A0A0A0LA28_CUCSA5.6e-0550.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G335350 PE=4 SV=1[more]
tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA2.1e-0442.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1[more]
tr|A0A0A0KPM1|A0A0A0KPM1_CUCSA2.8e-0464.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G057130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G015990.1CsaV3_4G015990.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G015990Cucumber (Gy14) v2cgybcucB171
CsaV3_4G015990Wild cucumber (PI 183967)cpicucB216