CsaV3_4G014940 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G014940
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 10479909 .. 10480175 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTAAGAGCATACGGCCATGAGTGGCAAGGATGGCTAGTCGAGAAGGGCAAAGCTAGGCATTTAGGGATGTCACGAACCTCTAAAGAGGTTAGCATGCAGCCAACGAACTCCCAGACAAGTTGGGCATGCAGTCATGACAAGGCATGTAAGGAGAGTGAGGTAGGCGGCAAGAACTGTCAAAAGAACCTCTTAAGGCAAATGGTTTGGCGGCCAATAATGTTAAAGGCGTTATGGACTAGAGGTAAAGTGGAGTACAAATGA

mRNA sequence

ATGCCGTTAAGAGCATACGGCCATGAGTGGCAAGGATGGCTAGTCGAGAAGGGCAAAGCTAGGCATTTAGGGATGTCACGAACCTCTAAAGAGGTTAGCATGCAGCCAACGAACTCCCAGACAAGTTGGGCATGCAGTCATGACAAGGCATGTAAGGAGAGTGAGGTAGGCGGCAAGAACTGTCAAAAGAACCTCTTAAGGCAAATGGTTTGGCGGCCAATAATGTTAAAGGCGTTATGGACTAGAGGTAAAGTGGAGTACAAATGA

Coding sequence (CDS)

ATGCCGTTAAGAGCATACGGCCATGAGTGGCAAGGATGGCTAGTCGAGAAGGGCAAAGCTAGGCATTTAGGGATGTCACGAACCTCTAAAGAGGTTAGCATGCAGCCAACGAACTCCCAGACAAGTTGGGCATGCAGTCATGACAAGGCATGTAAGGAGAGTGAGGTAGGCGGCAAGAACTGTCAAAAGAACCTCTTAAGGCAAATGGTTTGGCGGCCAATAATGTTAAAGGCGTTATGGACTAGAGGTAAAGTGGAGTACAAATGA

Protein sequence

MPLRAYGHEWQGWLVEKGKARHLGMSRTSKEVSMQPTNSQTSWACSHDKACKESEVGGKNCQKNLLRQMVWRPIMLKALWTRGKVEYK

Homology

[Close]

BLAST of CsaV3_4G014940 vs. NCBI nr
Match: KGN53999.1 (hypothetical protein Csa_4G252920 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 9.9e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MPLRAYGHEWQGWLVEKGKARHLGMSRTSKEVSMQPTNSQTSWACSHDKACKESEVGGKN 60
          MPLRAYGHEWQGWLVEKGKARHLGMSRTSKEVSMQPTNSQTSWACSHDKACKESEVGGKN
Sbjct: 1  MPLRAYGHEWQGWLVEKGKARHLGMSRTSKEVSMQPTNSQTSWACSHDKACKESEVGGKN 60

Query: 61 CQKNLLRQMVWRPIMLKALWTRGKVEYK 89
          CQKNLLRQMVWRPIMLKALWTRGKVEYK
Sbjct: 61 CQKNLLRQMVWRPIMLKALWTRGKVEYK 88

[Close]

BLAST of CsaV3_4G014940 vs. TrEMBL
Match: tr|A0A0A0KYY4|A0A0A0KYY4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G252920 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.5e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MPLRAYGHEWQGWLVEKGKARHLGMSRTSKEVSMQPTNSQTSWACSHDKACKESEVGGKN 60
          MPLRAYGHEWQGWLVEKGKARHLGMSRTSKEVSMQPTNSQTSWACSHDKACKESEVGGKN
Sbjct: 1  MPLRAYGHEWQGWLVEKGKARHLGMSRTSKEVSMQPTNSQTSWACSHDKACKESEVGGKN 60

Query: 61 CQKNLLRQMVWRPIMLKALWTRGKVEYK 89
          CQKNLLRQMVWRPIMLKALWTRGKVEYK
Sbjct: 61 CQKNLLRQMVWRPIMLKALWTRGKVEYK 88

The following BLAST results are available for this feature:

BLAST of CsaV3_4G014940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53999.1	9.9e-46	100.00	hypothetical protein Csa_4G252920 [Cucumis sativus]	[more]

BLAST of CsaV3_4G014940 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G014940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G014940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYY4\|A0A0A0KYY4_CUCSA	6.5e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G252920 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G014940.1	CsaV3_4G014940.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G014940	CSPI04G12330	Wild cucumber (PI 183967)	cpicucB216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G014940	Silver-seed gourd	carcucB0703
CsaV3_4G014940	Silver-seed gourd	carcucB1092
CsaV3_4G014940	Cucurbita pepo (Zucchini)	cpecucB0972
CsaV3_4G014940	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G014940	Cucurbita maxima (Rimu)	cmacucB0030
CsaV3_4G014940	Cucurbita maxima (Rimu)	cmacucB0563
CsaV3_4G014940	Cucurbita moschata (Rifu)	cmocucB0018
CsaV3_4G014940	Cucurbita moschata (Rifu)	cmocucB0549
CsaV3_4G014940	Cucurbita pepo (Zucchini)	cpecucB0716
CsaV3_4G014940	Bottle gourd (USVL1VR-Ls)	cuclsiB316
CsaV3_4G014940	Melon (DHL92) v3.5.1	cucmeB312
CsaV3_4G014940	Melon (DHL92) v3.6.1	cucmedB302
CsaV3_4G014940	Watermelon (Charleston Gray)	cucwcgB294
CsaV3_4G014940	Watermelon (97103) v1	cucwmB372
CsaV3_4G014940	Watermelon (97103) v2	cucwmbB288
CsaV3_4G014940	Wax gourd	cucwgoB431