CsaV3_4G012220 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G012220
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein FAM63A-like
Location	chr4 : 9529778 .. 9530765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGTTTGTTTGTCCTCCTCCTCCTCTCAGGTTCCACTATCTGCTTCTTTAAGCTTTTTTTTGCTTTTAGATTTTCTTCGTTGTTCTCCAACCAACATGCATGACCTTCAGGAACACATTTTCCAACCAACAAAACACTTCAGGAACACATTCATCTTTCTTGCCTTTTACTATCCTCTTTAAACGTTGTTATATCATGGTTCTTTCTTTTCACTATCCTCTTTATTTAGGTATGTTTGCCATATTATTAATACGAAGTTTGAGTTATTCTGTTAGATCTATTGCTTTAATCATTCTGTTTTTGTTAATTTGTTTGAGAATACTTTTGAAGTTCTATCCAGTTTGAAATGAATATATTTAAATCAGTACATATATTCATATTTGGTTGTTTATGTTGGGGCTGTACTTAAATTTGGGTCCAGGTGCAACGATTGAAGCATCACAGGGAAAGTTGTAATCTCTGGTTGCTGCATGGTTGATTGGTTTGAATAGTAATGTTGATGTAAATAGTCTTCTTAATTTTGTATGCTATATGAAAATTTTCTCCCACCCTGGTTTCACGAGTTCAGTTCTTTGATATTCACTTGTTGGTTTATAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAGTAGCTACTTAGTCCTTTTATCTTCGCCGGCCTTTTTTAAACTACGTTTAATGTTGTATTTGCAGAATTGATGATTTTAAATTCACTCCAGAATGTGCGATTTTTTATTTGCTGAACATTCGTCTATATCATGGTCGGATAGTTGACCCACAGGTTCTTATATACTTTCTTTCTTCTAATTATAA

mRNA sequence

CTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAG

Coding sequence (CDS)

CTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAG

Protein sequence

LFLLQFLISFEEEKAASQPFPRSSLGSWPPSQDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR

Homology

[Close]

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: XP_021901896.1 (uncharacterized protein LOC110817594 isoform X2 [Carica papaya])

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +KDA +VENQQ NI D IDRLPRLA GI+VNIKFRR
Sbjct: 101 NKDAGYVENQQQNIADAIDRLPRLATGIDVNIKFRR 136

[Close]

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: XP_021901894.1 (uncharacterized protein LOC110817594 isoform X1 [Carica papaya] >XP_021901895.1 uncharacterized protein LOC110817594 isoform X1 [Carica papaya])

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +KDA +VENQQ NI D IDRLPRLA GI+VNIKFRR
Sbjct: 101 NKDAGYVENQQQNIADAIDRLPRLATGIDVNIKFRR 136

[Close]

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: CDP09830.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 32  QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 96  KDKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 132

[Close]

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: XP_004245663.1 (ubiquitin carboxyl-terminal hydrolase MINDY-2 [Solanum lycopersicum])

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 94  DKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 129

[Close]

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: XP_007158448.1 (hypothetical protein PHAVU_002G153200g [Phaseolus vulgaris] >ESW30442.1 hypothetical protein PHAVU_002G153200g [Phaseolus vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 107 DKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 142

[Close]

BLAST of CsaV3_4G012220 vs. TAIR10
Match: AT4G11860.1 (Protein of unknown function (DUF544) )

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-08
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +KD  ++ENQQ NI D ID LPRL  GI+VNIKFRR
Sbjct: 107 NKDEGYIENQQQNIADAIDLLPRLTTGIDVNIKFRR 142

[Close]

BLAST of CsaV3_4G012220 vs. TrEMBL
Match: tr|A0A068UMS2|A0A068UMS2_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030303001 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 32  QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 96  KDKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 132

[Close]

BLAST of CsaV3_4G012220 vs. TrEMBL
Match: tr|A0A2G3DBK1|A0A2G3DBK1_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_00426 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 91  DKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 126

[Close]

BLAST of CsaV3_4G012220 vs. TrEMBL
Match: tr|A0A1U8G997|A0A1U8G997_CAPAN (protein FAM63B OS=Capsicum annuum OX=4072 GN=LOC107866295 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 91  DKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 126

[Close]

BLAST of CsaV3_4G012220 vs. TrEMBL
Match: tr|A0A2G3AE50|A0A2G3AE50_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_00401 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 91  DKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 126

[Close]

BLAST of CsaV3_4G012220 vs. TrEMBL
Match: tr|A0A2P2M4Z3|A0A2P2M4Z3_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 32 QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
          Q+KDA +VENQQ NI D ID LPRLA G++VNIKFRR
Sbjct: 2  QNKDAGYVENQQQNIADAIDSLPRLATGVDVNIKFRR 38

The following BLAST results are available for this feature:

BLAST of CsaV3_4G012220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021901896.1	3.5e-06	77.78	uncharacterized protein LOC110817594 isoform X2 [Carica papaya]	[more]
XP_021901894.1	3.5e-06	77.78	uncharacterized protein LOC110817594 isoform X1 [Carica papaya] >XP_021901895.1 ...	[more]
CDP09830.1	4.5e-06	75.68	unnamed protein product [Coffea canephora]	[more]
XP_004245663.1	5.9e-06	77.78	ubiquitin carboxyl-terminal hydrolase MINDY-2 [Solanum lycopersicum]	[more]
XP_007158448.1	5.9e-06	77.78	hypothetical protein PHAVU_002G153200g [Phaseolus vulgaris] >ESW30442.1 hypothet...	[more]

BLAST of CsaV3_4G012220 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11860.1	5.9e-08	66.67	Protein of unknown function (DUF544)	[more]

BLAST of CsaV3_4G012220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G012220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A068UMS2\|A0A068UMS2_COFCA	3.0e-06	75.68	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030303001 PE=4 ...	[more]
tr\|A0A2G3DBK1\|A0A2G3DBK1_CAPCH	3.9e-06	77.78	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_00426 PE=4 SV=1	[more]
tr\|A0A1U8G997\|A0A1U8G997_CAPAN	3.9e-06	77.78	protein FAM63B OS=Capsicum annuum OX=4072 GN=LOC107866295 PE=4 SV=1	[more]
tr\|A0A2G3AE50\|A0A2G3AE50_CAPAN	3.9e-06	77.78	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_00401 PE=4 SV=1	[more]
tr\|A0A2P2M4Z3\|A0A2P2M4Z3_RHIMU	3.9e-06	72.97	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G012220.1	CsaV3_4G012220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G012220	Silver-seed gourd	carcucB0313
CsaV3_4G012220	Silver-seed gourd	carcucB0662
CsaV3_4G012220	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G012220	Cucurbita maxima (Rimu)	cmacucB0792
CsaV3_4G012220	Cucurbita maxima (Rimu)	cmacucB1017
CsaV3_4G012220	Cucurbita moschata (Rifu)	cmocucB0774
CsaV3_4G012220	Cucurbita moschata (Rifu)	cmocucB1000
CsaV3_4G012220	Cucurbita pepo (Zucchini)	cpecucB0085
CsaV3_4G012220	Cucurbita pepo (Zucchini)	cpecucB0083
CsaV3_4G012220	Cucurbita pepo (Zucchini)	cpecucB0612
CsaV3_4G012220	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G012220	Bottle gourd (USVL1VR-Ls)	cuclsiB280
CsaV3_4G012220	Melon (DHL92) v3.5.1	cucmeB328
CsaV3_4G012220	Melon (DHL92) v3.6.1	cucmedB321
CsaV3_4G012220	Watermelon (Charleston Gray)	cucwcgB320
CsaV3_4G012220	Watermelon (97103) v1	cucwmB356
CsaV3_4G012220	Watermelon (97103) v2	cucwmbB309
CsaV3_4G012220	Wax gourd	cucwgoB410