CsaV3_4G011870 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G011870
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionReverse transcriptase
Locationchr4 : 8993564 .. 8994361 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCACGATAGAGACAATCAAGGCCGAGATGAAAGTGCAAGTGAATTTGACAATGAGAGTAGTAGGGAACCAAACCCTGAATCAAGCATGTGGCGTTTCGAGCAAGTTCAAGATCCCAAAACCCAAAGCCGTCAAAGGGAATCGCGATGCTAAAGAGATTGAAAATTTCATCTTTCATATGGAACGATACTTTAAGGCCAGTGGAACCAACTCTGAAGAAACTAAGGTGACATTAGCAGGAAATAGGTCTTGTCTAATTCAAACTGGATTGATGTGCTTGTCGGGGAGTACTAGTGCTTGGGGTCTGCAGTTTCTTATCATTCGTGATGTTTCTTCGGGAATTAGGCTTGGAGACCCTATTGCTAGGATTTGGTGTCGTCACATTCTTCTTTTAGGTCCCTTGCTCACCTTTGTAGTCAAACAATCTCTTTGCAGCAGCAAGAGTAGAGGCAAGGTCTTGAACTTTCTGCTCGTATAATTTAATCCTAGCCCACGACTTGAGCCCTTCTACAAAGCAAAATACTTTATCGTTTTACGAGATGTCTCGACTATCCAACATAATGGCGGAGAACTGTTTAACATAATCTCTAATGGTTCCCATGTGTTTAAGTTTCTGCAGTTTTCTTTTCGCAATAAACTAAACATTTTCGCGGAAGAACAGAGCCCTTAGTTCTTTCTTAAGATCTTCCCACGTATCAATGGTACATTGACCATTTTGGATGTCGATCACTTTCGATCTCCACCAAAGCTTTGCATCATCAGACAAATGCATGGAGGCTAATGACACCTTAGTTTCTT

mRNA sequence

GCCACGATAGAGACAATCAAGGCCGAGATGAAAGTGCAAGTGAATTTGACAATGAGAGTAGTAGGGAACCAAACCCTGAATCAAGCATGTGGCGTTTCGAGCAAGTTCAAGATCCCAAAACCCAAAGCCGTCAAAGGGAATCGCGATGCTAAAGAGATTGAAAATTTCATCTTTCATATGGAACGATACTTTAAGGCCAGTGGAACCAACTCTGAAGAAACTAAGGTGACATTAGCAGGAAATAGGTCTTGTCTAATTCAAACTGGATTGATGTGCTTGTCGGGGAGTACTAGTGCTTGGGGTCTGCAGTTTCTTATCATTCGTGATGTTTCTTCGGGAATTAGGCTTGGAGACCCTATTGCTAGGATTTGGTGTCGTCACATTCTTCTTTTAGGTCCCTTGCTCACCTTTGTAGTCAAACAATCTCTTTGCAGCAGCAAGAGTAGAGGCAAGGTCTTGAACTTTCTGCTCGTATAA

Coding sequence (CDS)

GCCACGATAGAGACAATCAAGGCCGAGATGAAAGTGCAAGTGAATTTGACAATGAGAGTAGTAGGGAACCAAACCCTGAATCAAGCATGTGGCGTTTCGAGCAAGTTCAAGATCCCAAAACCCAAAGCCGTCAAAGGGAATCGCGATGCTAAAGAGATTGAAAATTTCATCTTTCATATGGAACGATACTTTAAGGCCAGTGGAACCAACTCTGAAGAAACTAAGGTGACATTAGCAGGAAATAGGTCTTGTCTAATTCAAACTGGATTGATGTGCTTGTCGGGGAGTACTAGTGCTTGGGGTCTGCAGTTTCTTATCATTCGTGATGTTTCTTCGGGAATTAGGCTTGGAGACCCTATTGCTAGGATTTGGTGTCGTCACATTCTTCTTTTAGGTCCCTTGCTCACCTTTGTAGTCAAACAATCTCTTTGCAGCAGCAAGAGTAGAGGCAAGGTCTTGAACTTTCTGCTCGTATAA

Protein sequence

ATIETIKAEMKVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFIFHMERYFKASGTNSEETKVTLAGNRSCLIQTGLMCLSGSTSAWGLQFLIIRDVSSGIRLGDPIARIWCRHILLLGPLLTFVVKQSLCSSKSRGKVLNFLLV
Homology
[Close]
BLAST of CsaV3_4G011870 vs. NCBI nr
Match: XP_022150099.1 (uncharacterized protein LOC111018360 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 2   TIETIKAEM---KVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFIF 61
           TI+T++AEM     +VNLTMR VGNQ  NQA    +K K+P+PK   GNRDAK++ENF+F
Sbjct: 122 TIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFLF 181

Query: 62  HMERYFKASGTNSEETKVTLA 80
            +E+YFKA+GT SEE KVTLA
Sbjct: 182 DVEQYFKATGTTSEEMKVTLA 202

[Close]
BLAST of CsaV3_4G011870 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 8.8e-13
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0 

Query: 2   TIETIKAEM---KVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFIF 61
           TI+T++AEM     +VNLTMR VGNQ  NQ     +K K+P+PK   GNR  K++ENF F
Sbjct: 122 TIDTLRAEMTEISTRVNLTMRAVGNQAPNQXNMGFNKLKVPEPKPFNGNRXXKDLENFXF 181

Query: 62  HMERYFKASGTNSEETKVTLA 80
            +E+YFK +GT SE  KVTLA
Sbjct: 182 DVEQYFKXTGTXSEXMKVTLA 202

[Close]
BLAST of CsaV3_4G011870 vs. NCBI nr
Match: XP_015868924.1 (uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 74.3 bits (181), Expect = 4.1e-10
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 1   ATIETIKAEM---KVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFI 60
           AT+E +K EM     ++ +TMR V N+      G   + K+P+P+A  G RDAKE+ENF+
Sbjct: 279 ATVEALKIEMGQINTKLAITMRAVENRPAVPVGGDYGRMKVPEPRAYGGARDAKELENFL 338

Query: 61  FHMERYFKASGTNSEETKVTLA 80
           F ME+YF+A   +SEETKVT+A
Sbjct: 339 FDMEQYFRAIKPDSEETKVTMA 360

[Close]
BLAST of CsaV3_4G011870 vs. NCBI nr
Match: XP_022981546.1 (uncharacterized protein LOC111480631 [Cucurbita maxima] >XP_022981547.1 uncharacterized protein LOC111480631 [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 7.0e-10
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 1   ATIETIKAE---MKVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFI 60
           ATI  +KAE   +  ++NLT R VGNQT         K K+P+PK   G+RDAK +ENFI
Sbjct: 121 ATIGVVKAEVADLNTKLNLTTRAVGNQTPVGGVIQYIKLKVPEPKPFCGDRDAKALENFI 180

Query: 61  FHMERYFKASGTNSEETKVTLA 80
           F  E+YF+A+ T +EE KVT+A
Sbjct: 181 FDFEQYFRATNTVAEEMKVTVA 202

[Close]
BLAST of CsaV3_4G011870 vs. NCBI nr
Match: XP_022975516.1 (uncharacterized protein LOC111474945, partial [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 7.0e-10
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 3   IETIKAEMKVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFIFHMER 62
           I+   A M  ++ +TM+ V N T  Q    S+K + P+P+A KGN+DAKE+ENFIF +E+
Sbjct: 126 IQERMASMGTRIEVTMKAVENVTAGQTNTGSNKLRFPEPRAFKGNQDAKELENFIFDVEQ 185

Query: 63  YFKASGTNSEETKVTLA 80
           YFKA+ T +++ KVT+A
Sbjct: 186 YFKATTTCADDKKVTVA 202

[Close]
BLAST of CsaV3_4G011870 vs. TrEMBL
Match: tr|A0A2P6QT29|A0A2P6QT29_ROSCH (Putative nucleotidyltransferase, Ribonuclease H OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0401341 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 1   ATIETIK---AEMKVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFI 60
           ATI+  +    EM  ++NLT+R +GNQ +        K KIP+P+A  G RDAKE+EN++
Sbjct: 107 ATIDAFRNELVEMSAKLNLTIRAMGNQPVTD----YRKVKIPEPQAFGGARDAKELENYL 166

Query: 61  FHMERYFKASGTNSEETKVTLAGNRSCLIQTGLMCLSGSTSAW 101
           F ME+YF+A   +SEE KV +A           M LSG    W
Sbjct: 167 FDMEQYFRAVKPDSEEVKVNMA----------TMYLSGDAKLW 195

[Close]
BLAST of CsaV3_4G011870 vs. TrEMBL
Match: tr|A0A2P6RWL1|A0A2P6RWL1_ROSCH (Putative retrotransposon gag domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0137481 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 1   ATIETIK---AEMKVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFI 60
           ATI+  +    EM  ++NLT+R +GNQ +        K KIP+P+A  G RDAKE+EN++
Sbjct: 61  ATIDAFRNELVEMSTKLNLTIRAMGNQLVTD----YRKVKIPEPQAFGGARDAKELENYL 120

Query: 61  FHMERYFKASGTNSEETKVTLAGNRSCLIQTGLMCLSGSTSAW 101
           F ME+YF+A   +SEE KV +A           M LSG    W
Sbjct: 121 FDMEQYFRAVKPDSEEVKVNMA----------TMYLSGDPKLW 149

[Close]
BLAST of CsaV3_4G011870 vs. TrEMBL
Match: tr|M1A7M8|M1A7M8_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-07
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1   ATIETIKAEMKVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFIFHM 60
           +TI+T+KAEMK    L   V    +L+      ++ + PKP   KG RDA+E+ENF++H+
Sbjct: 143 STIKTMKAEMKA---LKEGVAAGGSLSLDQDKEARVEAPKPPMFKGVRDAQEVENFLWHL 202

Query: 61  ERYFKASGTNSEETKVTLA 80
           E YFK +G  S+E+K+  A
Sbjct: 203 ENYFKCNGLKSDESKINTA 218

[Close]
BLAST of CsaV3_4G011870 vs. TrEMBL
Match: tr|M1BV16|M1BV16_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1   ATIETIKAEMKVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFIFHM 60
           +TIET+KAEMK  +   +   G+ +L++     ++ + PKP   KG RDA+E+ENF++H+
Sbjct: 143 STIETMKAEMKA-LKEGVAAGGSSSLDR--DREARVEAPKPPMFKGVRDAQEVENFLWHL 202

Query: 61  ERYFKASGTNSEETKVTLA 80
           E YFK +G  S E+K+  A
Sbjct: 203 ENYFKCNGLKSNESKINTA 218

[Close]
BLAST of CsaV3_4G011870 vs. TrEMBL
Match: tr|A0A061EV17|A0A061EV17_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_022987 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 1  ATIETIKAEMKVQVNLTMRVVGNQTLNQACGVSSKFKIPKPKAVKGNRDAKEIENFIFHM 60
          +T++    E+K QVNL +  VGN +  ++       K+ KPK  +G R+AKE+ENF+F M
Sbjct: 14 STLQYEIRELKTQVNLLVITVGNAS-GRSRDRGEMAKVSKPKRYEGVRNAKELENFLFDM 73

Query: 61 ERYFKASGTNSEETKVTLA 80
          E+YF+A  T SEE K+ +A
Sbjct: 74 EQYFRAVCTESEEDKMAMA 91

The following BLAST results are available for this feature:
BLAST of CsaV3_4G011870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150099.11.7e-1660.49uncharacterized protein LOC111018360 [Momordica charantia][more]
XP_022154605.18.8e-1354.32uncharacterized protein LOC111021829 [Momordica charantia][more]
XP_015868924.14.1e-1047.56uncharacterized protein LOC107406328 [Ziziphus jujuba][more]
XP_022981546.17.0e-1050.00uncharacterized protein LOC111480631 [Cucurbita maxima] >XP_022981547.1 uncharac... [more]
XP_022975516.17.0e-1046.75uncharacterized protein LOC111474945, partial [Cucurbita maxima][more]
BLAST of CsaV3_4G011870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G011870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G011870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P6QT29|A0A2P6QT29_ROSCH2.3e-0941.75Putative nucleotidyltransferase, Ribonuclease H OS=Rosa chinensis OX=74649 GN=Rc... [more]
tr|A0A2P6RWL1|A0A2P6RWL1_ROSCH3.0e-0941.75Putative retrotransposon gag domain-containing protein OS=Rosa chinensis OX=7464... [more]
tr|M1A7M8|M1A7M8_SOLTU4.8e-0741.77Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
tr|M1BV16|M1BV16_SOLTU1.4e-0641.77Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
tr|A0A061EV17|A0A061EV17_THECC1.8e-0643.04Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_022987 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G011870.1CsaV3_4G011870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G011870Wax gourdcucwgoB399
CsaV3_4G011870Wax gourdcucwgoB415
CsaV3_4G011870Silver-seed gourdcarcucB0219
CsaV3_4G011870Silver-seed gourdcarcucB0317
CsaV3_4G011870Cucumber (Gy14) v2cgybcucB171
CsaV3_4G011870Cucumber (Gy14) v1cgycucB260
CsaV3_4G011870Cucurbita maxima (Rimu)cmacucB0794
CsaV3_4G011870Cucurbita maxima (Rimu)cmacucB1024
CsaV3_4G011870Cucurbita moschata (Rifu)cmocucB0776
CsaV3_4G011870Cucurbita moschata (Rifu)cmocucB1008
CsaV3_4G011870Cucurbita pepo (Zucchini)cpecucB0086
CsaV3_4G011870Cucurbita pepo (Zucchini)cpecucB0601
CsaV3_4G011870Wild cucumber (PI 183967)cpicucB213
CsaV3_4G011870Melon (DHL92) v3.5.1cucmeB338
CsaV3_4G011870Melon (DHL92) v3.6.1cucmedB322
CsaV3_4G011870Watermelon (Charleston Gray)cucwcgB316
CsaV3_4G011870Watermelon (Charleston Gray)cucwcgB320
CsaV3_4G011870Watermelon (97103) v1cucwmB354
CsaV3_4G011870Watermelon (97103) v1cucwmB356
CsaV3_4G011870Watermelon (97103) v2cucwmbB309