CsaV3_4G011830 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G011830
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprotein FAR1-RELATED SEQUENCE 8-like
Locationchr4 : 8892848 .. 8893084 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCACGAGAGTTTTATGAACCTGTAAGAGAAAAATCATCAATAAGTGTTGCGTCACTGCAATCAATAATCAAGGAAAAGTTTGGCTACCATGTTTCTTACCATAAGGCTTGGGATGGTAGGAGAAAAGTAGTGGCCAAAGTGTTTGACGATTGGGATGAGTCGTACAAATTATTACCAAGATGGTTGTACATTGTGAAGCACCCCAATCCTGAAACACTTGTTGAATGGAGG

mRNA sequence

ATGCTTGCACGAGAGTTTTATGAACCTGTAAGAGAAAAATCATCAATAAGTGTTGCGTCACTGCAATCAATAATCAAGGAAAAGTTTGGCTACCATGTTTCTTACCATAAGGCTTGGGATGGTAGGAGAAAAGTAGTGGCCAAAGTGTTTGACGATTGGGATGAGTCGTACAAATTATTACCAAGATGGTTGTACATTGTGAAGCACCCCAATCCTGAAACACTTGTTGAATGGAGG

Coding sequence (CDS)

ATGCTTGCACGAGAGTTTTATGAACCTGTAAGAGAAAAATCATCAATAAGTGTTGCGTCACTGCAATCAATAATCAAGGAAAAGTTTGGCTACCATGTTTCTTACCATAAGGCTTGGGATGGTAGGAGAAAAGTAGTGGCCAAAGTGTTTGACGATTGGGATGAGTCGTACAAATTATTACCAAGATGGTTGTACATTGTGAAGCACCCCAATCCTGAAACACTTGTTGAATGGAGG

Protein sequence

MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLLPRWLYIVKHPNPETLVEWR
Homology
[Close]
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_008456454.1 (PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-30
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0 

Query: 1   MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
           ML REF+E VREK SISVASLQS+IKEKFGY+VSY +AWDG++K VAKVF DWDESYKLL
Sbjct: 188 MLVREFFEFVREKPSISVASLQSMIKEKFGYYVSYRRAWDGKKKAVAKVFGDWDESYKLL 247

Query: 61  PRWLYIVKHPNPETLVEWR 80
           PRWLY+VKH NP TLVEWR
Sbjct: 248 PRWLYMVKHTNPGTLVEWR 266

[Close]
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_022151714.1 (uncharacterized protein LOC111019626 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 46/79 (58.23%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 1   MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
           M++REF + VR   S S+A+LQ++IKEKFGYHV Y K W+G+ K +A++F DWDESYKLL
Sbjct: 98  MISREFCDAVRANPSTSIATLQNLIKEKFGYHVPYWKVWEGKTKALARIFGDWDESYKLL 157

Query: 61  PRWLYIVKHPNPETLVEWR 80
            +W+Y++KH NP T+VEW+
Sbjct: 158 TKWMYMLKHINPGTIVEWK 176

[Close]
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_022153527.1 (uncharacterized protein LOC111021011 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 44/79 (55.70%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
          M++REF + VR   S S+A L+ +IKEKFGYHV Y + W+G+ K +A++F DWDESY+LL
Sbjct: 1  MISREFCDAVRANPSTSIAILRDLIKEKFGYHVPYRRVWEGKTKALARIFGDWDESYQLL 60

Query: 61 PRWLYIVKHPNPETLVEWR 80
          P+W+Y++KH NP T+VEW+
Sbjct: 61 PKWMYMLKHTNPGTIVEWK 79

[Close]
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_022154586.1 (uncharacterized protein LOC111021813 [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 9.8e-21
Identity = 43/79 (54.43%), Postives = 62/79 (78.48%), Query Frame = 0 

Query: 1   MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
           M++REF + VR  +S S+A+ Q +IKEKFGYHV Y + W+G+  V+A++F DWDESY+LL
Sbjct: 28  MISREFCDAVRANTSTSIATHQDLIKEKFGYHVPYERVWEGKTNVLARIFGDWDESYQLL 87

Query: 61  PRWLYIVKHPNPETLVEWR 80
           P+W+Y+ KH N  T+VEW+
Sbjct: 88  PKWMYMPKHTNLGTIVEWK 106

[Close]
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_022143566.1 (uncharacterized protein LOC111013435 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 40/79 (50.63%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1   MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
           M++REF + V    + S+++LQ ++KEKFGYHV Y + W+G+ K +A++FDDWDESY+ L
Sbjct: 275 MISREFCDAVIVNRATSISTLQDLMKEKFGYHVPYRRVWEGKTKSLARIFDDWDESYQRL 334

Query: 61  PRWLYIVKHPNPETLVEWR 80
           P+W+Y++KH NP T+V+W+
Sbjct: 335 PKWMYMLKHTNPGTIVKWK 353

[Close]
BLAST of CsaV3_4G011830 vs. TAIR10
Match: AT1G64260.1 (MuDR family transposase)

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 27/77 (35.06%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 3   AREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLLPR 62
           A E    VR + ++S+A L+   KEK GY +   K  DG+ +V+ +VF D D+S++++P+
Sbjct: 271 ADEIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPK 330

Query: 63  WLYIVKHPNPETLVEWR 80
            L    H +   LV+W+
Sbjct: 331 -LISAFHSSNGLLVDWQ 346

[Close]
BLAST of CsaV3_4G011830 vs. TAIR10
Match: AT1G49920.1 (MuDR family transposase)

HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06
Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 0 

Query: 10  VREKSSISVASLQSIIKEKFGY-------HVSYHKAWDGRRKVVAKVFDDWDESYKLLPR 69
           VR + ++S A L    ++KFG+       H S     D + K + + F DWD+S++L+P+
Sbjct: 273 VRVQPTLSTAELDKWWEKKFGFALDQVVEHCSEGLVEDAKVKAIKRFFGDWDQSFRLIPK 332

Query: 70  WLYIVKHPNPETLVEWR 80
            L  V H +   LV+W+
Sbjct: 333 -LMSVLHSSNGLLVDWQ 348

[Close]
BLAST of CsaV3_4G011830 vs. TAIR10
Match: AT1G64255.1 (MuDR family transposase)

HSP 1 Score: 40.4 bits (93), Expect = 5.9e-04
Identity = 20/75 (26.67%), Postives = 38/75 (50.67%), Query Frame = 0 

Query: 5   EFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLLPRWL 64
           E    VR   + +++ L+   K+K GY +        + K + +VF DWD+S++  P+ +
Sbjct: 280 EIERAVRYMPTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLM 339

Query: 65  YIVKHPNPETLVEWR 80
             +   N   LV+W+
Sbjct: 340 SALCSSN-GLLVDWK 353

[Close]
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A0A1S3C4J7|A0A1S3C4J7_CUCME (uncharacterized protein LOC103496397 OS=Cucumis melo OX=3656 GN=LOC103496397 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0 

Query: 1   MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
           ML REF+E VREK SISVASLQS+IKEKFGY+VSY +AWDG++K VAKVF DWDESYKLL
Sbjct: 188 MLVREFFEFVREKPSISVASLQSMIKEKFGYYVSYRRAWDGKKKAVAKVFGDWDESYKLL 247

Query: 61  PRWLYIVKHPNPETLVEWR 80
           PRWLY+VKH NP TLVEWR
Sbjct: 248 PRWLYMVKHTNPGTLVEWR 266

[Close]
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A5BD12|A5BD12_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040275 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.6e-17
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0 

Query: 1   MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
           ++ARE    V+   +IS+A+L  I+K KFGY V Y K W+ R+K + +VF DWDESY LL
Sbjct: 355 LIAREIQNVVQRDPNISIAALHQIVKGKFGYDVHYRKVWEARKKAIERVFGDWDESYHLL 414

Query: 61  PRWLYIVKHPNPETLVEWR 80
           P+W+ I+K  NP T V+W+
Sbjct: 415 PKWMNILKITNPGTKVDWK 433

[Close]
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A5AJI6|A5AJI6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_038144 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-15
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 0 

Query: 2   LAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLLP 61
           +A+E    V+   +IS+A+L  I+K+KFGY+V Y + W  +RK +  +F DWDESY+ LP
Sbjct: 275 IAQEVQNVVQSDHTISIAALHQIVKDKFGYNVHYKRIWGAKRKTIIWIFGDWDESYQALP 334

Query: 62  RWLYIVKHPNPETLVEWR 80
           RW+ IVK  NP T V W+
Sbjct: 335 RWMNIVKLTNPVTKVVWK 352

[Close]
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A5BJW1|A5BJW1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0 

Query: 1   MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
           ++ARE    V+   + S+A+L  I+K+KFGY V Y + W+ +RK + +VF DWDESY+ L
Sbjct: 190 LIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESYQAL 249

Query: 61  PRWLYIVKHPNPETLVEWR 80
           P+W+ I++  NP T V W+
Sbjct: 250 PKWMNILQLTNPGTKVVWK 268

[Close]
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A5B5G3|A5B5G3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019818 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0 

Query: 1   MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLL 60
           ++ARE    V+   + S+A+L  I+K+KFGY V Y + W+ +RK + +VF DWDESY+ L
Sbjct: 320 LIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESYQAL 379

Query: 61  PRWLYIVKHPNPETLVEWR 80
           P+W+ I++  NP T V W+
Sbjct: 380 PKWMNILQLTNPGTKVVWK 398

The following BLAST results are available for this feature:
BLAST of CsaV3_4G011830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456454.13.0e-3081.01PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo][more]
XP_022151714.11.8e-2258.23uncharacterized protein LOC111019626 [Momordica charantia][more]
XP_022153527.14.0e-2255.70uncharacterized protein LOC111021011 [Momordica charantia][more]
XP_022154586.19.8e-2154.43uncharacterized protein LOC111021813 [Momordica charantia][more]
XP_022143566.12.8e-2050.63uncharacterized protein LOC111013435 [Momordica charantia][more]
BLAST of CsaV3_4G011830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G64260.11.2e-0735.06MuDR family transposase[more]
AT1G49920.16.3e-0632.47MuDR family transposase[more]
AT1G64255.15.9e-0426.67MuDR family transposase[more]
BLAST of CsaV3_4G011830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G011830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C4J7|A0A1S3C4J7_CUCME2.0e-3081.01uncharacterized protein LOC103496397 OS=Cucumis melo OX=3656 GN=LOC103496397 PE=... [more]
tr|A5BD12|A5BD12_VITVI9.6e-1749.37Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040275 PE=4 SV=1[more]
tr|A5AJI6|A5AJI6_VITVI6.9e-1547.44Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_038144 PE=4 SV=1[more]
tr|A5BJW1|A5BJW1_VITVI1.2e-1444.30Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 PE=4 SV=1[more]
tr|A5B5G3|A5B5G3_VITVI1.2e-1444.30Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019818 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G011830.1CsaV3_4G011830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31973FAMILY NOT NAMEDcoord: 3..77
NoneNo IPR availablePANTHERPTHR31973:SF22SUBFAMILY NOT NAMEDcoord: 3..77

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G011830Wax gourdcucwgoB399
CsaV3_4G011830Wax gourdcucwgoB415
CsaV3_4G011830Silver-seed gourdcarcucB0219
CsaV3_4G011830Silver-seed gourdcarcucB0317
CsaV3_4G011830Cucumber (Gy14) v2cgybcucB171
CsaV3_4G011830Cucumber (Gy14) v1cgycucB260
CsaV3_4G011830Cucurbita maxima (Rimu)cmacucB0794
CsaV3_4G011830Cucurbita maxima (Rimu)cmacucB0801
CsaV3_4G011830Cucurbita maxima (Rimu)cmacucB1024
CsaV3_4G011830Cucurbita moschata (Rifu)cmocucB0776
CsaV3_4G011830Cucurbita moschata (Rifu)cmocucB0786
CsaV3_4G011830Cucurbita moschata (Rifu)cmocucB1008
CsaV3_4G011830Cucurbita pepo (Zucchini)cpecucB0079
CsaV3_4G011830Cucurbita pepo (Zucchini)cpecucB0086
CsaV3_4G011830Cucurbita pepo (Zucchini)cpecucB0601
CsaV3_4G011830Wild cucumber (PI 183967)cpicucB213
CsaV3_4G011830Melon (DHL92) v3.5.1cucmeB338
CsaV3_4G011830Melon (DHL92) v3.6.1cucmedB322
CsaV3_4G011830Watermelon (Charleston Gray)cucwcgB316
CsaV3_4G011830Watermelon (Charleston Gray)cucwcgB320
CsaV3_4G011830Watermelon (97103) v1cucwmB354
CsaV3_4G011830Watermelon (97103) v1cucwmB356
CsaV3_4G011830Watermelon (97103) v2cucwmbB303
CsaV3_4G011830Watermelon (97103) v2cucwmbB309