CsaV3_4G011740 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G011740
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr4 : 8785168 .. 8785442 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACAT

mRNA sequence

ACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACAT

Coding sequence (CDS)

ACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACAT

Protein sequence

TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLLCVQHMTNILGASLVPVDERMDSMIYVRCNSYX
BLAST of CsaV3_4G011740 vs. NCBI nr
Match: XP_021716606.1 (uncharacterized protein LOC110684457 [Chenopodium quinoa])

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-06
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 0

Query: 2   NTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPAFQHNLILMSQLIDDANCVVR 61
           ++IIS  V LPDG  A  T EG   L      + +L  P    NLI +S+LIDD+NC VR
Sbjct: 194 HSIISCPVGLPDGAKAMATKEGRVVLADGITLEHILFVPQLNCNLISVSKLIDDSNCFVR 253

Query: 62  FT-LLCVQHMTNILGASLVPVDERMDSMIYVR 88
           FT  LC  H  +    SL+   ER+D + Y R
Sbjct: 254 FTNSLCAIHDQS--SGSLIGGGERIDGLYYFR 283

BLAST of CsaV3_4G011740 vs. NCBI nr
Match: XP_021766294.1 (uncharacterized protein LOC110730780 [Chenopodium quinoa])

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 0

Query: 2   NTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPAFQHNLILMSQLIDDANCVVR 61
           ++++S  V LPDGT A  T EG   L      + VL  P    NLI +S++IDD+NC VR
Sbjct: 410 HSMLSCPVGLPDGTQALATKEGRVYLADNITLENVLFVPQLNCNLISVSKMIDDSNCYVR 469

Query: 62  FT-LLCV---QHMTNILGASLVPVDERMDSMIYVR 88
           FT  LC    QH  +++G       ER+D + Y R
Sbjct: 470 FTDSLCAIQDQHSGSLIGGG-----ERIDGLYYFR 499

BLAST of CsaV3_4G011740 vs. NCBI nr
Match: XP_021860021.1 (uncharacterized protein LOC110799127 [Spinacia oleracea])

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-05
Identity = 36/86 (41.86%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 9   VSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFT--LLC 68
           V LPDG  AF T EG   L      + VL  P  + NLI +SQ+IDD+ C VRFT  L  
Sbjct: 403 VGLPDGEQAFATKEGRVILTDSLILEHVLFVPTLRCNLISVSQMIDDSQCYVRFTNSLCA 462

Query: 69  VQHMTNILGASLVPVDERMDSMIYVR 88
           +Q   +    SL+   ER+D + Y R
Sbjct: 463 IQDQRS---GSLIGAGERVDGLYYFR 485

BLAST of CsaV3_4G011740 vs. NCBI nr
Match: KYP64173.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 39/93 (41.94%), Postives = 49/93 (52.69%), Query Frame = 0

Query: 1   TNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVV 60
           T T+    V LP+G  A  T EG   L       +VL  P+   NLI +SQLIDDANCVV
Sbjct: 344 TKTLQGCPVGLPNGKEAVATKEGDVILEGGQKISKVLYVPSLNCNLISVSQLIDDANCVV 403

Query: 61  RFT-LLCVQHMTNILGASLVPVDERMDSMIYVR 88
           +FT  LCV     +    L+ V ER + + Y R
Sbjct: 404 QFTNSLCVMQDRTL--RMLIRVGERRNGLYYFR 434

BLAST of CsaV3_4G011740 vs. NCBI nr
Match: XP_021846124.1 (uncharacterized protein LOC110785915 [Spinacia oleracea])

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 9   VSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFT--LLC 68
           V LP+G  AF T EG   L      Q VL  P    NLI +SQ+IDD++C V+FT  L  
Sbjct: 402 VGLPNGAQAFATKEGRIVLTDGLVLQHVLFVPTLHCNLISVSQMIDDSHCTVQFTNSLCA 461

Query: 69  VQHMTNILGASLVPVDERMDSMIYVR 88
           +Q   +    SL+   ER+D + Y R
Sbjct: 462 IQDQRS---GSLIGAGERLDGLYYFR 484

BLAST of CsaV3_4G011740 vs. TrEMBL
Match: tr|A0A151TAW1|A0A151TAW1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_018763 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.8e-05
Identity = 39/93 (41.94%), Postives = 49/93 (52.69%), Query Frame = 0

Query: 1   TNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVV 60
           T T+    V LP+G  A  T EG   L       +VL  P+   NLI +SQLIDDANCVV
Sbjct: 344 TKTLQGCPVGLPNGKEAVATKEGDVILEGGQKISKVLYVPSLNCNLISVSQLIDDANCVV 403

Query: 61  RFT-LLCVQHMTNILGASLVPVDERMDSMIYVR 88
           +FT  LCV     +    L+ V ER + + Y R
Sbjct: 404 QFTNSLCVMQDRTL--RMLIRVGERRNGLYYFR 434

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021716606.12.7e-0642.39uncharacterized protein LOC110684457 [Chenopodium quinoa][more]
XP_021766294.11.8e-0540.00uncharacterized protein LOC110730780 [Chenopodium quinoa][more]
XP_021860021.13.9e-0541.86uncharacterized protein LOC110799127 [Spinacia oleracea][more]
KYP64173.18.7e-0541.94Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
XP_021846124.18.7e-0540.70uncharacterized protein LOC110785915 [Spinacia oleracea][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A151TAW1|A0A151TAW1_CAJCA5.8e-0541.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G011740.1CsaV3_4G011740.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None