CsaV3_4G010600 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G010600
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description30S ribosomal protein S3, chloroplastic
Locationchr4 : 8486760 .. 8487099 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGATATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAATAAGCCCTTACTTAACTTGTGTTTACGTTTTATTCAATGATCGACCAAGAAATGACAAATCAGTCTTTTTCCTTTAAATAAAAAATGAGCAATTCGAGAGCT

mRNA sequence

TTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGATATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAA

Coding sequence (CDS)

TTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGATATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAA

Protein sequence

FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ
Homology
[Close]
BLAST of CsaV3_4G010600 vs. NCBI nr
Match: YP_247638.1 (ribosomal protein S3 [Cucumis sativus] >YP_009004081.1 ribosomal protein S3 [Cucumis hystrix] >Q4VZN0.1 RecName: Full=30S ribosomal protein S3, chloroplastic >CAJ00797.1 ribosomal protein S3 (chloroplast) [Cucumis sativus] >AAZ94688.1 ribosomal protein S3 (chloroplast) [Cucumis sativus] >ABI97455.1 ribosomal protein S3 (chloroplast) [Cucumis sativus] >ABI98784.1 ribosomal protein S3 (chloroplast) [Cucumis sativus] >AHJ61423.1 ribosomal protein S3 (plastid) [Cucumis hystrix] >ALF03340.1 ribosomal protein S3 (chloroplast) [Cucumis sativus var. hardwickii] >ANF28415.1 ribosomal protein S3 (chloroplast) [Cucumis sativus var. hardwickii] >ARQ16117.1 ribosomal protein S3 (chloroplast) [Cucumis sativus] >ARQ16200.1 ribosomal protein S3 (chloroplast) [Cucumis sativus] >ARQ16283.1 ribosomal protein S3 (chloroplast) [Cucumis sativus] >ARQ16366.1 ribosomal protein S3 (chloroplast) [Cucumis sativus] >ASY97455.1 ribosomal protein S3 (chloroplast) [Cucumis sativus var. hardwickii] >AVE15370.1 ribosomal protein S3 (chloroplast) [Cucumis sativus var. sativus])

HSP 1 Score: 161.8 bits (408), Expect = 9.7e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYGILGIKIWIFVDEQ
Sbjct: 201 RTIYGILGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. NCBI nr
Match: YP_009456184.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88705.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88995.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89054.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89113.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89172.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89231.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89290.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89350.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89409.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89468.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89527.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89587.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89646.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89705.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89764.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89823.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89882.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89941.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90000.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90059.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90118.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90177.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90236.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90295.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90354.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90413.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90472.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90531.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90590.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90649.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90708.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90767.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90826.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90885.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90944.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91003.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91062.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91295.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AUJ21949.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDEQ
Sbjct: 201 RTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. NCBI nr
Match: AHM88822.1 (ribosomal protein S3, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDEQ
Sbjct: 201 RTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. NCBI nr
Match: AHM88879.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDEQ
Sbjct: 201 RTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. NCBI nr
Match: AHM88937.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDEQ
Sbjct: 201 RTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. TAIR10
Match: ATCG00800.1 (structural constituent of ribosome)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-36
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI AKIDYC Y V
Sbjct: 141 FRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDE+
Sbjct: 201 RTIYGVLGIKIWIFVDEE 218

[Close]
BLAST of CsaV3_4G010600 vs. TAIR10
Match: ATMG00090.1 (structural constituent of ribosome;protein binding)

HSP 1 Score: 42.0 bits (97), Expect = 2.0e-04
Identity = 21/59 (35.59%), Postives = 32/59 (54.24%), Query Frame = 0 

Query: 16  GTKGIQVQIAGRI-DGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWI 74
           G +GI++  +GR+ D  E A+ +  +  +        KIDY    V T YGI G+K+WI
Sbjct: 481 GVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWI 539

[Close]
BLAST of CsaV3_4G010600 vs. Swiss-Prot
Match: sp|Q4VZN0|RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYGILGIKIWIFVDEQ
Sbjct: 201 RTIYGILGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. Swiss-Prot
Match: sp|Q332T8|RR3_LACSA (30S ribosomal protein S3, chloroplastic OS=Lactuca sativa OX=4236 GN=rps3 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.3e-36
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCY V
Sbjct: 141 FRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTV 200

Query: 61  RTIYGILGIKIWIFVD 77
           RTIYG+LGIKIWIF+D
Sbjct: 201 RTIYGVLGIKIWIFID 216

[Close]
BLAST of CsaV3_4G010600 vs. Swiss-Prot
Match: sp|Q06GV8|RR3_DRIGR (30S ribosomal protein S3, chloroplastic OS=Drimys granadensis OX=224735 GN=rps3 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-35
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKID+C Y V
Sbjct: 139 FRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTV 198

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDEQ
Sbjct: 199 RTIYGVLGIKIWIFVDEQ 216

[Close]
BLAST of CsaV3_4G010600 vs. Swiss-Prot
Match: sp|Q0G9I0|RR3_LIRTU (30S ribosomal protein S3, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps3 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-35
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKID+C Y V
Sbjct: 142 FRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTV 201

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDEQ
Sbjct: 202 RTIYGVLGIKIWIFVDEQ 219

[Close]
BLAST of CsaV3_4G010600 vs. Swiss-Prot
Match: sp|Q8S8V5|RR3_ATRBE (30S ribosomal protein S3, chloroplastic OS=Atropa belladonna OX=33113 GN=rps3 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.6e-35
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQA TKGIQ+QIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYC Y V
Sbjct: 141 FRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCAYTV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIF+DE+
Sbjct: 201 RTIYGVLGIKIWIFLDEE 218

[Close]
BLAST of CsaV3_4G010600 vs. TrEMBL
Match: tr|A0A218KG80|A0A218KG80_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rps3 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYGILGIKIWIFVDEQ
Sbjct: 201 RTIYGILGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. TrEMBL
Match: tr|A0A1X9Q171|A0A1X9Q171_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYGILGIKIWIFVDEQ
Sbjct: 201 RTIYGILGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. TrEMBL
Match: tr|W8E3G6|W8E3G6_9ROSI (Ribosomal protein S3 OS=Cucumis hystrix OX=396994 GN=rps3 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYGILGIKIWIFVDEQ
Sbjct: 201 RTIYGILGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. TrEMBL
Match: tr|X2EZ87|X2EZ87_LAGSI (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps3 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.4e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDEQ
Sbjct: 201 RTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CsaV3_4G010600 vs. TrEMBL
Match: tr|A0A249RXQ1|A0A249RXQ1_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rps3 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.4e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1   FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 60
           FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV
Sbjct: 141 FRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPV 200

Query: 61  RTIYGILGIKIWIFVDEQ 79
           RTIYG+LGIKIWIFVDEQ
Sbjct: 201 RTIYGVLGIKIWIFVDEQ 218

The following BLAST results are available for this feature:
BLAST of CsaV3_4G010600 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_247638.19.7e-37100.00ribosomal protein S3 [Cucumis sativus] >YP_009004081.1 ribosomal protein S3 [Cuc... [more]
YP_009456184.11.3e-3698.72ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88705.1 ribosomal p... [more]
AHM88822.11.3e-3698.72ribosomal protein S3, partial (chloroplast) [Lagenaria siceraria][more]
AHM88879.11.3e-3698.72ribosomal protein S3 (chloroplast) [Lagenaria siceraria][more]
AHM88937.11.3e-3698.72ribosomal protein S3 (chloroplast) [Lagenaria siceraria][more]
BLAST of CsaV3_4G010600 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00800.11.2e-3692.31structural constituent of ribosome[more]
ATMG00090.12.0e-0435.59structural constituent of ribosome;protein binding[more]
BLAST of CsaV3_4G010600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4VZN0|RR3_CUCSA3.2e-39100.0030S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 ... [more]
sp|Q332T8|RR3_LACSA7.3e-3694.7430S ribosomal protein S3, chloroplastic OS=Lactuca sativa OX=4236 GN=rps3 PE=3 S... [more]
sp|Q06GV8|RR3_DRIGR1.2e-3593.5930S ribosomal protein S3, chloroplastic OS=Drimys granadensis OX=224735 GN=rps3 ... [more]
sp|Q0G9I0|RR3_LIRTU1.2e-3593.5930S ribosomal protein S3, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rp... [more]
sp|Q8S8V5|RR3_ATRBE1.6e-3591.0330S ribosomal protein S3, chloroplastic OS=Atropa belladonna OX=33113 GN=rps3 PE... [more]
BLAST of CsaV3_4G010600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A218KG80|A0A218KG80_CUCSA6.4e-37100.0030S ribosomal protein S3, chloroplastic OS=Cucumis sativus var. hardwickii OX=31... [more]
tr|A0A1X9Q171|A0A1X9Q171_CUCSA6.4e-37100.0030S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 ... [more]
tr|W8E3G6|W8E3G6_9ROSI6.4e-37100.00Ribosomal protein S3 OS=Cucumis hystrix OX=396994 GN=rps3 PE=3 SV=1[more]
tr|X2EZ87|X2EZ87_LAGSI8.4e-3798.7230S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps3 P... [more]
tr|A0A249RXQ1|A0A249RXQ1_CUCME8.4e-3798.7230S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018280Ribosomal_S3_CS
IPR001351Ribosomal_S3_C
IPR036419Ribosomal_S3_C_sf
IPR005704Ribosomal_S3_bac
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G010600.1CsaV3_4G010600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005704Ribosomal protein S3, bacterialTIGRFAMTIGR01009TIGR01009coord: 1..77
e-value: 3.6E-38
score: 129.4
IPR005704Ribosomal protein S3, bacterialPANTHERPTHR11760:SF1930S RIBOSOMAL PROTEIN S3, CHLOROPLASTICcoord: 1..77
IPR036419Ribosomal protein S3, C-terminal domain superfamilyGENE3DG3DSA:3.30.1140.32coord: 1..78
e-value: 1.4E-31
score: 110.7
IPR036419Ribosomal protein S3, C-terminal domain superfamilySUPERFAMILYSSF54821Ribosomal protein S3 C-terminal domaincoord: 1..77
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 1..73
e-value: 4.1E-28
score: 97.6
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 1..77
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 34..68

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G010600Silver-seed gourdcarcucB0220
CsaV3_4G010600Cucumber (Gy14) v1cgycucB014
CsaV3_4G010600Cucumber (Gy14) v2cgybcucB171
CsaV3_4G010600Cucurbita maxima (Rimu)cmacucB0801
CsaV3_4G010600Cucurbita moschata (Rifu)cmocucB0786
CsaV3_4G010600Cucurbita pepo (Zucchini)cpecucB0079
CsaV3_4G010600Wild cucumber (PI 183967)cpicucB213
CsaV3_4G010600Bottle gourd (USVL1VR-Ls)cuclsiB281
CsaV3_4G010600Melon (DHL92) v3.5.1cucmeB338
CsaV3_4G010600Melon (DHL92) v3.6.1cucmedB322
CsaV3_4G010600Watermelon (Charleston Gray)cucwcgB322
CsaV3_4G010600Watermelon (97103) v2cucwmbB311
CsaV3_4G010600Wax gourdcucwgoB399