CsaV3_4G010410 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G010410
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 8251203 .. 8251442 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCTACTCTCACCTGCAGTTCTGGTTGGTTGGTTTGCTATAGTGCCACATCTTCCGCGCTCGTCGAAGTTCACCATTATTTGGGTTTTATCGGAACTGGAGCTTCATTGTAAGCGAGTCGCTCAATTTTCCATCCAACTCACCCGCAAGATGGGTCTCGAAGTCCTACGACAAGTTGTGGATGTTAAAAATTGGAAACTCAACGCTAAATGTCTCTCTTGTATTGCTCAATCATAG

mRNA sequence

ATGCCGCTACTCTCACCTGCAGTTCTGGTTGGTTGGTTTGCTATAGTGCCACATCTTCCGCGCTCGTCGAAGTTCACCATTATTTGGGTTTTATCGGAACTGGAGCTTCATTGTAAGCGAGTCGCTCAATTTTCCATCCAACTCACCCGCAAGATGGGTCTCGAAGTCCTACGACAAGTTGTGGATGTTAAAAATTGGAAACTCAACGCTAAATGTCTCTCTTGTATTGCTCAATCATAG

Coding sequence (CDS)

ATGCCGCTACTCTCACCTGCAGTTCTGGTTGGTTGGTTTGCTATAGTGCCACATCTTCCGCGCTCGTCGAAGTTCACCATTATTTGGGTTTTATCGGAACTGGAGCTTCATTGTAAGCGAGTCGCTCAATTTTCCATCCAACTCACCCGCAAGATGGGTCTCGAAGTCCTACGACAAGTTGTGGATGTTAAAAATTGGAAACTCAACGCTAAATGTCTCTCTTGTATTGCTCAATCATAG

Protein sequence

MPLLSPAVLVGWFAIVPHLPRSSKFTIIWVLSELELHCKRVAQFSIQLTRKMGLEVLRQVVDVKNWKLNAKCLSCIAQS

Homology

[Close]

BLAST of CsaV3_4G010410 vs. NCBI nr
Match: KGN53812.1 (hypothetical protein Csa_4G135210 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MPLLSPAVLVGWFAIVPHLPRSSKFTIIWVLSELELHCKRVAQFSIQLTRKMGLEVLRQV 60
          MPLLSPAVLVGWFAIVPHLPRSSKFTIIWVLSELELHCKRVAQFSIQLTRKMGLEVLRQV
Sbjct: 1  MPLLSPAVLVGWFAIVPHLPRSSKFTIIWVLSELELHCKRVAQFSIQLTRKMGLEVLRQV 60

Query: 61 VDVKNWKLNAKCLSCIAQS 80
          VDVKNWKLNAKCLSCIAQS
Sbjct: 61 VDVKNWKLNAKCLSCIAQS 79

[Close]

BLAST of CsaV3_4G010410 vs. TrEMBL
Match: tr|A0A0A0KZK8|A0A0A0KZK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G135210 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MPLLSPAVLVGWFAIVPHLPRSSKFTIIWVLSELELHCKRVAQFSIQLTRKMGLEVLRQV 60
          MPLLSPAVLVGWFAIVPHLPRSSKFTIIWVLSELELHCKRVAQFSIQLTRKMGLEVLRQV
Sbjct: 1  MPLLSPAVLVGWFAIVPHLPRSSKFTIIWVLSELELHCKRVAQFSIQLTRKMGLEVLRQV 60

Query: 61 VDVKNWKLNAKCLSCIAQS 80
          VDVKNWKLNAKCLSCIAQS
Sbjct: 61 VDVKNWKLNAKCLSCIAQS 79

The following BLAST results are available for this feature:

BLAST of CsaV3_4G010410 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53812.1	1.7e-36	100.00	hypothetical protein Csa_4G135210 [Cucumis sativus]	[more]

BLAST of CsaV3_4G010410 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G010410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G010410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZK8\|A0A0A0KZK8_CUCSA	1.1e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G135210 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G010410.1	CsaV3_4G010410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G010410	CsGy4G009880	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G010410	Cucurbita maxima (Rimu)	cmacucB0300
CsaV3_4G010410	Cucurbita maxima (Rimu)	cmacucB0568
CsaV3_4G010410	Cucurbita moschata (Rifu)	cmocucB0293
CsaV3_4G010410	Cucurbita pepo (Zucchini)	cpecucB0704
CsaV3_4G010410	Cucurbita pepo (Zucchini)	cpecucB0769
CsaV3_4G010410	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G010410	Bottle gourd (USVL1VR-Ls)	cuclsiB332
CsaV3_4G010410	Melon (DHL92) v3.5.1	cucmeB318
CsaV3_4G010410	Melon (DHL92) v3.6.1	cucmedB310
CsaV3_4G010410	Watermelon (Charleston Gray)	cucwcgB347
CsaV3_4G010410	Watermelon (97103) v1	cucwmB320
CsaV3_4G010410	Watermelon (97103) v2	cucwmbB334
CsaV3_4G010410	Wax gourd	cucwgoB374
CsaV3_4G010410	Wax gourd	cucwgoB378