CsaV3_4G010320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G010320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 8082341 .. 8083886 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGGTGACCTAACCCATGACACTCATCGTCAGCTCCACCGCCCTCAATGAAAACACTGTTTTAAGAATATATGTAGAGGAATGATAATCTTTTGCAAAGCCAAGCTGCATCTATTAAAAATCTTGAGTGACAATTAAGACAATTGGCCAATGATATAGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAGTAATAATTCCCATTTCTTAAATTCATCTTTAACTAATTATAATTCTTCCTTGCAGAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGGTTGCCTAAGAAAGAAAGACAACAAACAACAGTTTGATAAGTTCTTAAATGTTTGAAAGCAACTTTACATTAATATACCATTCGTGGATGCACTAGAGCAAATGTCATCTTATGTCATGTTTCTGAAAGACATCTTAGCTAACAAAAGAAAAATCACTGGGTTAGAAACAATGGCTTTAATTGAAATCACGAACAACATCTGTAATATAAGAACACCAGCAAAGATGACAGACCCTGGAAGTTTCACTGTTCCCTCTTTGATAGGCGGAATTAATTTAGGTCGCACACTTTGCGAACTAGGAGCAAGTATCAACTTGATGCCACTATCTATTTTTAAAAAATGGAAAATAGGGGAAATTCAACCAACACTAATAAGGCTTAATTTCGAGGACAGATCCATAGCTAAGCCAGAGGGTAACATTGAAGATGTTTTGGTAAAAGTTGACAAATTCATGTTTCCCACAAATTTCATCATTCTGGACTATGAAGCTGGTAGAGAAGTGCCAATCATTTTAGGGCGGCCATTATTTCTAGCAACATGTCATACTCTCATAGATGTACACCAAGGGGAAATGACCATGTGTATAAATAGGGAGGAAGTAAAATTCAATGTCATTAATGCAATGAAATTTACTACTCATGTTAAAAGTTGGAGCGCCTTAAAAGACCTCGACTGAGACAATTGTGAAGAAGAAGCGTACCAAGATTTGTTTAACACGGAAGAAAACTTTGAAGAATAGACAAGTTCACTTGAAGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA

mRNA sequence

ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA

Coding sequence (CDS)

ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA

Protein sequence

MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETLILNVEERTDLEP
Homology
[Close]
BLAST of CsaV3_4G010320 vs. NCBI nr
Match: KGN53802.1 (hypothetical protein Csa_4G131160 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 1.3e-103
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60
           MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN
Sbjct: 1   MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60

Query: 61  TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120
           TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR
Sbjct: 61  TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120

Query: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180
           WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL
Sbjct: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180

Query: 181 ILNVEERTDLEP 193
           ILNVEERTDLEP
Sbjct: 181 ILNVEERTDLEP 192

[Close]
BLAST of CsaV3_4G010320 vs. TrEMBL
Match: tr|A0A0A0KZJ6|A0A0A0KZJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131160 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 8.7e-104
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60
           MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN
Sbjct: 1   MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60

Query: 61  TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120
           TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR
Sbjct: 61  TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120

Query: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180
           WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL
Sbjct: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180

Query: 181 ILNVEERTDLEP 193
           ILNVEERTDLEP
Sbjct: 181 ILNVEERTDLEP 192

The following BLAST results are available for this feature:
BLAST of CsaV3_4G010320 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53802.11.3e-103100.00hypothetical protein Csa_4G131160 [Cucumis sativus][more]
BLAST of CsaV3_4G010320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G010320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G010320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZJ6|A0A0A0KZJ6_CUCSA8.7e-104100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G010320.1CsaV3_4G010320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..132

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G010320Cucumber (Chinese Long) v3cuccucB031
CsaV3_4G010320Cucumber (Gy14) v2cgybcucB033
CsaV3_4G010320Cucumber (Gy14) v2cgybcucB171
CsaV3_4G010320Cucumber (Gy14) v1cgycucB147
CsaV3_4G010320Cucurbita maxima (Rimu)cmacucB0259
CsaV3_4G010320Cucurbita maxima (Rimu)cmacucB0300
CsaV3_4G010320Cucurbita maxima (Rimu)cmacucB0568
CsaV3_4G010320Cucurbita moschata (Rifu)cmocucB0078
CsaV3_4G010320Cucurbita moschata (Rifu)cmocucB0247
CsaV3_4G010320Cucurbita moschata (Rifu)cmocucB0293
CsaV3_4G010320Cucurbita moschata (Rifu)cmocucB0555
CsaV3_4G010320Cucurbita pepo (Zucchini)cpecucB0461
CsaV3_4G010320Cucurbita pepo (Zucchini)cpecucB0646
CsaV3_4G010320Cucurbita pepo (Zucchini)cpecucB0704
CsaV3_4G010320Cucurbita pepo (Zucchini)cpecucB0769
CsaV3_4G010320Wild cucumber (PI 183967)cpicucB038
CsaV3_4G010320Wild cucumber (PI 183967)cpicucB213
CsaV3_4G010320Bottle gourd (USVL1VR-Ls)cuclsiB332
CsaV3_4G010320Melon (DHL92) v3.5.1cucmeB274
CsaV3_4G010320Melon (DHL92) v3.5.1cucmeB284
CsaV3_4G010320Melon (DHL92) v3.5.1cucmeB318
CsaV3_4G010320Melon (DHL92) v3.6.1cucmedB267
CsaV3_4G010320Melon (DHL92) v3.6.1cucmedB277
CsaV3_4G010320Melon (DHL92) v3.6.1cucmedB310
CsaV3_4G010320Watermelon (Charleston Gray)cucwcgB313
CsaV3_4G010320Watermelon (Charleston Gray)cucwcgB333
CsaV3_4G010320Watermelon (Charleston Gray)cucwcgB347
CsaV3_4G010320Watermelon (97103) v1cucwmB320
CsaV3_4G010320Watermelon (97103) v1cucwmB351
CsaV3_4G010320Watermelon (97103) v1cucwmB374
CsaV3_4G010320Watermelon (97103) v2cucwmbB302
CsaV3_4G010320Watermelon (97103) v2cucwmbB322
CsaV3_4G010320Watermelon (97103) v2cucwmbB334
CsaV3_4G010320Wax gourdcucwgoB374
CsaV3_4G010320Wax gourdcucwgoB378
CsaV3_4G010320Wax gourdcucwgoB420
CsaV3_4G010320Wax gourdcucwgoB435