CsaV3_4G010310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G010310
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 8081855 .. 8082250 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAAGGGTGTCTTCATCACAACATTCTAGGATGCGTTATAATCGAACAATTCTATTTTGGATTGAGTAGAGATACACAACAATTTGTAGACGCAGTATTTATAGGTGGGATGCTTCGATTATCCTGCAACCATATTAAGACAACGCTAGACGCTATGGTCAGTAACAGTCAAGAATGGAGAGATAACGAATTTGGCTCACATAATGAAAGCAAAGGAAACAGAAGAGAAAAAGGAAGGACAAACAAAGGATCAAATGGGAATGCAATGATAACATTGCAGAGTCAGGTTACTGAAATGAATAAGCTCTTGCAGTCCATGGCTTTGTCACAACTCAATGCCATTGGAAGTTCAATTAAAGTAGTACACCAAGTGTTGAATTTGGTTGTGTAG

mRNA sequence

ATGATGAAAGGGTGTCTTCATCACAACATTCTAGGATGCGTTATAATCGAACAATTCTATTTTGGATTGAGTAGAGATACACAACAATTTGTAGACGCAGTATTTATAGGTGGGATGCTTCGATTATCCTGCAACCATATTAAGACAACGCTAGACGCTATGGTCAGTAACAGTCAAGAATGGAGAGATAACGAATTTGGCTCACATAATGAAAGCAAAGGAAACAGAAGAGAAAAAGGAAGGACAAACAAAGGATCAAATGGGAATGCAATGATAACATTGCAGAGTCAGGTTACTGAAATGAATAAGCTCTTGCAGTCCATGGCTTTGTCACAACTCAATGCCATTGGAAGTTCAATTAAAGTAGTACACCAAGTGTTGAATTTGGTTGTGTAG

Coding sequence (CDS)

ATGATGAAAGGGTGTCTTCATCACAACATTCTAGGATGCGTTATAATCGAACAATTCTATTTTGGATTGAGTAGAGATACACAACAATTTGTAGACGCAGTATTTATAGGTGGGATGCTTCGATTATCCTGCAACCATATTAAGACAACGCTAGACGCTATGGTCAGTAACAGTCAAGAATGGAGAGATAACGAATTTGGCTCACATAATGAAAGCAAAGGAAACAGAAGAGAAAAAGGAAGGACAAACAAAGGATCAAATGGGAATGCAATGATAACATTGCAGAGTCAGGTTACTGAAATGAATAAGCTCTTGCAGTCCATGGCTTTGTCACAACTCAATGCCATTGGAAGTTCAATTAAAGTAGTACACCAAGTGTTGAATTTGGTTGTGTAG

Protein sequence

MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQEWRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSIKVVHQVLNLVV
Homology
[Close]
BLAST of CsaV3_4G010310 vs. NCBI nr
Match: KGN53801.1 (hypothetical protein Csa_4G131150 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
           MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
           WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

Query: 121 KVVHQVLNLVV 132
           KVVHQVLNLVV
Sbjct: 121 KVVHQVLNLVV 131

[Close]
BLAST of CsaV3_4G010310 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_7G307410 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 7.8e-23
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0 

Query: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
           ++K C  H I  CV +E FYFGLS+DT Q V+ +F+GGMLR S N IK TLD+M +NSQE
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
           W D  FGS        R +GRT +G + + ++ LQ Q+  MN LLQSM LSQ+NA  + I
Sbjct: 81  WDDIGFGS--------RHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 140

Query: 121 KVVHQVLNLVV 132
             V QV   +V
Sbjct: 141 HAVKQVNKFIV 143

[Close]
BLAST of CsaV3_4G010310 vs. NCBI nr
Match: KGN57762.1 (hypothetical protein Csa_3G282990 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 5.3e-11
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 34 VFIGGMLRLSCNHIKTTLDAMVSNSQEWRDNEFGSHNESKGNRREKGRTNKGSNGN 90
          VF GGML  S NHIKTTL+AM SNSQEWRD+EFGS NES G+RR +GR ++GS GN
Sbjct: 2  VFTGGMLWSSYNHIKTTLEAMTSNSQEWRDDEFGSRNESIGSRRGRGRIDEGSEGN 57

[Close]
BLAST of CsaV3_4G010310 vs. TrEMBL
Match: tr|A0A0A0L0Y4|A0A0A0L0Y4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 7.1e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
           MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
           WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

Query: 121 KVVHQVLNLVV 132
           KVVHQVLNLVV
Sbjct: 121 KVVHQVLNLVV 131

[Close]
BLAST of CsaV3_4G010310 vs. TrEMBL
Match: tr|A0A0A0K6F9|A0A0A0K6F9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-23
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0 

Query: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
           ++K C  H I  CV +E FYFGLS+DT Q V+ +F+GGMLR S N IK TLD+M +NSQE
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
           W D  FGS        R +GRT +G + + ++ LQ Q+  MN LLQSM LSQ+NA  + I
Sbjct: 81  WDDIGFGS--------RHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 140

Query: 121 KVVHQVLNLVV 132
             V QV   +V
Sbjct: 141 HAVKQVNKFIV 143

[Close]
BLAST of CsaV3_4G010310 vs. TrEMBL
Match: tr|A0A0A0LAQ9|A0A0A0LAQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G282990 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-11
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 34 VFIGGMLRLSCNHIKTTLDAMVSNSQEWRDNEFGSHNESKGNRREKGRTNKGSNGN 90
          VF GGML  S NHIKTTL+AM SNSQEWRD+EFGS NES G+RR +GR ++GS GN
Sbjct: 2  VFTGGMLWSSYNHIKTTLEAMTSNSQEWRDDEFGSRNESIGSRRGRGRIDEGSEGN 57

The following BLAST results are available for this feature:
BLAST of CsaV3_4G010310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53801.11.1e-64100.00hypothetical protein Csa_4G131150 [Cucumis sativus][more]
KGN44484.17.8e-2349.62hypothetical protein Csa_7G307410 [Cucumis sativus][more]
KGN57762.15.3e-1171.43hypothetical protein Csa_3G282990 [Cucumis sativus][more]
BLAST of CsaV3_4G010310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G010310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G010310 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0Y4|A0A0A0L0Y4_CUCSA7.1e-65100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1[more]
tr|A0A0A0K6F9|A0A0A0K6F9_CUCSA5.2e-2349.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
tr|A0A0A0LAQ9|A0A0A0LAQ9_CUCSA3.5e-1171.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G282990 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G010310.1CsaV3_4G010310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..89

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G010310CSPI04G10170Wild cucumber (PI 183967)cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G010310Cucumber (Chinese Long) v3cuccucB031
CsaV3_4G010310Cucumber (Gy14) v2cgybcucB033
CsaV3_4G010310Cucumber (Gy14) v2cgybcucB171
CsaV3_4G010310Cucumber (Gy14) v1cgycucB147
CsaV3_4G010310Cucurbita maxima (Rimu)cmacucB0259
CsaV3_4G010310Cucurbita maxima (Rimu)cmacucB0300
CsaV3_4G010310Cucurbita maxima (Rimu)cmacucB0568
CsaV3_4G010310Cucurbita moschata (Rifu)cmocucB0078
CsaV3_4G010310Cucurbita moschata (Rifu)cmocucB0247
CsaV3_4G010310Cucurbita moschata (Rifu)cmocucB0293
CsaV3_4G010310Cucurbita moschata (Rifu)cmocucB0555
CsaV3_4G010310Cucurbita pepo (Zucchini)cpecucB0461
CsaV3_4G010310Cucurbita pepo (Zucchini)cpecucB0646
CsaV3_4G010310Cucurbita pepo (Zucchini)cpecucB0704
CsaV3_4G010310Cucurbita pepo (Zucchini)cpecucB0769
CsaV3_4G010310Wild cucumber (PI 183967)cpicucB038
CsaV3_4G010310Bottle gourd (USVL1VR-Ls)cuclsiB332
CsaV3_4G010310Melon (DHL92) v3.5.1cucmeB274
CsaV3_4G010310Melon (DHL92) v3.5.1cucmeB284
CsaV3_4G010310Melon (DHL92) v3.5.1cucmeB318
CsaV3_4G010310Melon (DHL92) v3.6.1cucmedB267
CsaV3_4G010310Melon (DHL92) v3.6.1cucmedB277
CsaV3_4G010310Melon (DHL92) v3.6.1cucmedB310
CsaV3_4G010310Watermelon (Charleston Gray)cucwcgB313
CsaV3_4G010310Watermelon (Charleston Gray)cucwcgB333
CsaV3_4G010310Watermelon (Charleston Gray)cucwcgB347
CsaV3_4G010310Watermelon (97103) v1cucwmB320
CsaV3_4G010310Watermelon (97103) v1cucwmB351
CsaV3_4G010310Watermelon (97103) v1cucwmB374
CsaV3_4G010310Watermelon (97103) v2cucwmbB302
CsaV3_4G010310Watermelon (97103) v2cucwmbB322
CsaV3_4G010310Watermelon (97103) v2cucwmbB334
CsaV3_4G010310Wax gourdcucwgoB374
CsaV3_4G010310Wax gourdcucwgoB378
CsaV3_4G010310Wax gourdcucwgoB420
CsaV3_4G010310Wax gourdcucwgoB435