CsaV3_4G010060 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G010060
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 7803942 .. 7804398 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCACTATTTTTAACCATTTTATGGTTGGCGTGCAGCTAGGACTCCCTCCTTTCGTTACAGAATCTGAATGTCATGTTTCTTCCAATATTGTGTTACAAGAGACATGTGCAGTCAATGTATGGCTTGAGTTTTTGCTGCTGGTGTTGTTTTGCCTGGTGCTTATGTTGTATGTAAGGTAGTGATTCTTTTTCATAACGATTCTGATTGTAATTCTACTCATTGTGTGATTAATGGTCGTATTTTAGAGCTGGTTGGCGGGAGAAAGTAGAAATCTCTATCTTCTGATTCCATTTTTTAACATGTTTAACACTGACTTCAAATACGCTCTTCCAAAAAACATCTACTTCAACAAAGATTTCTGATTACCTGTGAAGTTCTGTTGTGTTTTTGGATGTGGTTTCATGATGCAGGTTAGCAGCTTTACATTTTGGTCTCTACCATTATGAAGTGTGA

mRNA sequence

ATGGTCACTATTTTTAACCATTTTATGGTTGGCGTGCAGCTAGGACTCCCTCCTTTCGTTACAGAATCTGAATGTCATGTTTCTTCCAATATTGTGTTACAAGAGACATGTGCAGTCAATGTATGGCTTGAGTTTTTGCTGCTGGTGTTGTTTTGCCTGGTGCTTATGTTGTATGTAAGGTTAGCAGCTTTACATTTTGGTCTCTACCATTATGAAGTGTGA

Coding sequence (CDS)

ATGGTCACTATTTTTAACCATTTTATGGTTGGCGTGCAGCTAGGACTCCCTCCTTTCGTTACAGAATCTGAATGTCATGTTTCTTCCAATATTGTGTTACAAGAGACATGTGCAGTCAATGTATGGCTTGAGTTTTTGCTGCTGGTGTTGTTTTGCCTGGTGCTTATGTTGTATGTAAGGTTAGCAGCTTTACATTTTGGTCTCTACCATTATGAAGTGTGA

Protein sequence

MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVRLAALHFGLYHYEV
Homology
[Close]
BLAST of CsaV3_4G010060 vs. NCBI nr
Match: KGN53774.1 (hypothetical protein Csa_4G126440 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60
          MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR
Sbjct: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60

Query: 61 LAALHFGLYHYEV 74
          LAALHFGLYHYEV
Sbjct: 61 LAALHFGLYHYEV 73

[Close]
BLAST of CsaV3_4G010060 vs. TrEMBL
Match: tr|A0A0A0KY42|A0A0A0KY42_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G126440 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.9e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60
          MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR
Sbjct: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60

Query: 61 LAALHFGLYHYEV 74
          LAALHFGLYHYEV
Sbjct: 61 LAALHFGLYHYEV 73

The following BLAST results are available for this feature:
BLAST of CsaV3_4G010060 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53774.11.5e-31100.00hypothetical protein Csa_4G126440 [Cucumis sativus][more]
BLAST of CsaV3_4G010060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G010060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G010060 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KY42|A0A0A0KY42_CUCSA9.9e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G126440 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G010060.1CsaV3_4G010060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G010060Silver-seed gourdcarcucB0739
CsaV3_4G010060Silver-seed gourdcarcucB0859
CsaV3_4G010060Cucumber (Gy14) v2cgybcucB033
CsaV3_4G010060Cucumber (Gy14) v2cgybcucB171
CsaV3_4G010060Cucumber (Gy14) v1cgycucB147
CsaV3_4G010060Cucumber (Gy14) v1cgycucB279
CsaV3_4G010060Cucurbita maxima (Rimu)cmacucB0089
CsaV3_4G010060Cucurbita maxima (Rimu)cmacucB0259
CsaV3_4G010060Cucurbita maxima (Rimu)cmacucB0300
CsaV3_4G010060Cucurbita maxima (Rimu)cmacucB0568
CsaV3_4G010060Cucurbita moschata (Rifu)cmocucB0078
CsaV3_4G010060Cucurbita moschata (Rifu)cmocucB0247
CsaV3_4G010060Cucurbita moschata (Rifu)cmocucB0293
CsaV3_4G010060Cucurbita moschata (Rifu)cmocucB0555
CsaV3_4G010060Cucurbita pepo (Zucchini)cpecucB0461
CsaV3_4G010060Cucurbita pepo (Zucchini)cpecucB0646
CsaV3_4G010060Cucurbita pepo (Zucchini)cpecucB0704
CsaV3_4G010060Cucurbita pepo (Zucchini)cpecucB0769
CsaV3_4G010060Wild cucumber (PI 183967)cpicucB038
CsaV3_4G010060Wild cucumber (PI 183967)cpicucB213
CsaV3_4G010060Bottle gourd (USVL1VR-Ls)cuclsiB293
CsaV3_4G010060Bottle gourd (USVL1VR-Ls)cuclsiB332
CsaV3_4G010060Melon (DHL92) v3.5.1cucmeB274
CsaV3_4G010060Melon (DHL92) v3.5.1cucmeB284
CsaV3_4G010060Melon (DHL92) v3.5.1cucmeB318
CsaV3_4G010060Melon (DHL92) v3.6.1cucmedB267
CsaV3_4G010060Melon (DHL92) v3.6.1cucmedB277
CsaV3_4G010060Melon (DHL92) v3.6.1cucmedB310
CsaV3_4G010060Watermelon (Charleston Gray)cucwcgB313
CsaV3_4G010060Watermelon (Charleston Gray)cucwcgB333
CsaV3_4G010060Watermelon (Charleston Gray)cucwcgB346
CsaV3_4G010060Watermelon (97103) v1cucwmB318
CsaV3_4G010060Watermelon (97103) v1cucwmB351
CsaV3_4G010060Watermelon (97103) v1cucwmB374
CsaV3_4G010060Watermelon (97103) v2cucwmbB302
CsaV3_4G010060Watermelon (97103) v2cucwmbB322
CsaV3_4G010060Watermelon (97103) v2cucwmbB332
CsaV3_4G010060Wax gourdcucwgoB374
CsaV3_4G010060Wax gourdcucwgoB420
CsaV3_4G010060Wax gourdcucwgoB435
CsaV3_4G010060Cucumber (Chinese Long) v3cuccucB031