CsaV3_4G009990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G009990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 7768256 .. 7768454 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAGAAACAGTTCAATTCTCCACCCTCTTCTTCTCCAGTTCCAGTTCTAGGGCTCCTCCACAAACTCTACTCTCACCTTCCTTCTTCTGCTTCTGCGCTGTCCCAATTCTCTACAAATACCTATCCTTTTCACCTTCTTGTTGGACCAATTCCAGGCCCTGTTTCGGCTCTGGATTCGTTTTACCAATGGTGA

mRNA sequence

AAAAAAAAAGAAACAGTTCAATTCTCCACCCTCTTCTTCTCCAGTTCCAGTTCTAGGGCTCCTCCACAAACTCTACTCTCACCTTCCTTCTTCTGCTTCTGCGCTGTCCCAATTCTCTACAAATACCTATCCTTTTCACCTTCTTGTTGGACCAATTCCAGGCCCTGTTTCGGCTCTGGATTCGTTTTACCAATGGTGA

Coding sequence (CDS)

AAAAAAAAAGAAACAGTTCAATTCTCCACCCTCTTCTTCTCCAGTTCCAGTTCTAGGGCTCCTCCACAAACTCTACTCTCACCTTCCTTCTTCTGCTTCTGCGCTGTCCCAATTCTCTACAAATACCTATCCTTTTCACCTTCTTGTTGGACCAATTCCAGGCCCTGTTTCGGCTCTGGATTCGTTTTACCAATGGTGA

Protein sequence

KKKETVQFSTLFFSSSSSRAPPQTLLSPSFFCFCAVPILYKYLSFSPSCWTNSRPCFGSGFVLPMVX
Homology
[Close]
BLAST of CsaV3_4G009990 vs. NCBI nr
Match: KGN53770.1 (hypothetical protein Csa_4G125410 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-22
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 9  STLFFSSSSSRAPPQTLLSPSFFCFCAVPILYKYLSFSPSCWTNSRPCFGSGFVLPMV 67
          S +   SSSSRAPPQTLLSPSFFCFCAVPILYKYLSFSPSCWTNSRPCFGSGFVLPMV
Sbjct: 20 SQIVQKSSSSRAPPQTLLSPSFFCFCAVPILYKYLSFSPSCWTNSRPCFGSGFVLPMV 77

[Close]
BLAST of CsaV3_4G009990 vs. TrEMBL
Match: tr|A0A0A0KVW5|A0A0A0KVW5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G125410 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-22
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 9  STLFFSSSSSRAPPQTLLSPSFFCFCAVPILYKYLSFSPSCWTNSRPCFGSGFVLPMV 67
          S +   SSSSRAPPQTLLSPSFFCFCAVPILYKYLSFSPSCWTNSRPCFGSGFVLPMV
Sbjct: 20 SQIVQKSSSSRAPPQTLLSPSFFCFCAVPILYKYLSFSPSCWTNSRPCFGSGFVLPMV 77

The following BLAST results are available for this feature:
BLAST of CsaV3_4G009990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53770.14.4e-2291.38hypothetical protein Csa_4G125410 [Cucumis sativus][more]
BLAST of CsaV3_4G009990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVW5|A0A0A0KVW5_CUCSA2.9e-2291.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G125410 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G009990.1CsaV3_4G009990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G009990CsGy4G009480Cucumber (Gy14) v2cgybcucB171
CsaV3_4G009990MELO3C018898.2Melon (DHL92) v3.6.1cucmedB310
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G009990Silver-seed gourdcarcucB0739
CsaV3_4G009990Silver-seed gourdcarcucB0859
CsaV3_4G009990Cucumber (Gy14) v2cgybcucB033
CsaV3_4G009990Cucumber (Gy14) v1cgycucB147
CsaV3_4G009990Cucumber (Gy14) v1cgycucB279
CsaV3_4G009990Cucurbita maxima (Rimu)cmacucB0089
CsaV3_4G009990Cucurbita maxima (Rimu)cmacucB0259
CsaV3_4G009990Cucurbita maxima (Rimu)cmacucB0300
CsaV3_4G009990Cucurbita maxima (Rimu)cmacucB0568
CsaV3_4G009990Cucurbita moschata (Rifu)cmocucB0247
CsaV3_4G009990Cucurbita moschata (Rifu)cmocucB0293
CsaV3_4G009990Cucurbita moschata (Rifu)cmocucB0555
CsaV3_4G009990Cucurbita pepo (Zucchini)cpecucB0704
CsaV3_4G009990Cucurbita pepo (Zucchini)cpecucB0769
CsaV3_4G009990Wild cucumber (PI 183967)cpicucB038
CsaV3_4G009990Wild cucumber (PI 183967)cpicucB213
CsaV3_4G009990Bottle gourd (USVL1VR-Ls)cuclsiB293
CsaV3_4G009990Bottle gourd (USVL1VR-Ls)cuclsiB332
CsaV3_4G009990Melon (DHL92) v3.5.1cucmeB284
CsaV3_4G009990Melon (DHL92) v3.5.1cucmeB318
CsaV3_4G009990Watermelon (Charleston Gray)cucwcgB333
CsaV3_4G009990Watermelon (Charleston Gray)cucwcgB346
CsaV3_4G009990Watermelon (97103) v1cucwmB318
CsaV3_4G009990Watermelon (97103) v1cucwmB374
CsaV3_4G009990Watermelon (97103) v2cucwmbB332
CsaV3_4G009990Wax gourdcucwgoB374
CsaV3_4G009990Cucumber (Chinese Long) v3cuccucB031