CsaV3_4G009800 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G009800
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 7564884 .. 7565976 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGAAATGTGTGGTTGTGAATCCAAAAGCAACAAATTGTCCTAAAAATTAGGTGGTTGGTTCCAATATAAAACTATGCCTTCCACCCTTCCGCATCCCTTGTCCTGATCATTCTCAAACGCATCGATATCTTAAGCCCCCCTTTTGAGTTTGTGTGTGCATTTGTTTTAATCTCCCACCTCCACCAGGCTCGCATTAGTCCCAACCAACTTTATTTTTCCACAATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAAGCGAGGTTTCCGCTACACCCACAAACAAGCCCCAGACCCAGGCAACTGAGATCGTTACTCAGGTAAAATTAATTTAATTAAAATGTACTTTCATGAGATCATTGATTATTAGTGTGTCTAGCTTCAAATATATTTTATACTTTACATAATTAATTACGTTACATTATAATAATATGTTTTTCTTTAGGGAAATAATGATGGAGGTAAGAGTGCATCAACAACATTGGTGGACCTGTCCAAATCCAACGAAACAAAACAGGACAAAGCTGGTGGAGATGTTGAGCTTGAGCCTGCCTCTGGAGTTCCTAATTATGATAAATCAACTGCTCTCAACCTTACCCAAGCGGAGAAAGTCGAAGGCATTGCCAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCAAGAACACTCAGACCAAGGAGGGCCACCCTAGGATGACGATTGGTGCGGATGCCGCCAAATTAGATGCCACTCCAACTCCAACCTCTGAACCCAAAAACATGGCACCCCTTGATGTAGCGATCTAACCTAACCATACTTTTTATTTGTTTTCTATATACCTATATTCAACTCATCCATATATTCATATTAACTCCACTTATCCTTCTATTCAAATTTCACGAAACCAACCAACAATTCTTGATTATGTATATTATTCACCATCTTCTACTTAATCCACTTTAATTATGCTAATTATGCATAACAAACATGTATTTATTCTTCTCATTACTCTCTGGTCTCCGCCTTTTACATTTTGCTAAGAAAGAGGACCTCACACTCCATACCTCTAGATACAACGATACCGAAAATAAATTTCTCTCATAA

mRNA sequence

ATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAAGCGAGGTTTCCGCTACACCCACAAACAAGCCCCAGACCCAGGCAACTGAGATCGTTACTCAGGGAAATAATGATGGAGGTAAGAGTGCATCAACAACATTGGTGGACCTGTCCAAATCCAACGAAACAAAACAGGACAAAGCTGGTGGAGATGTTGAGCTTGAGCCTGCCTCTGGAGTTCCTAATTATGATAAATCAACTGCTCTCAACCTTACCCAAGCGGAGAAAGTCGAAGGCATTGCCAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCAAGAACACTCAGACCAAGGAGGGCCACCCTAGGATGACGATTGGTGCGGATGCCGCCAAATTAGATGCCACTCCAACTCCAACCTCTGAACCCAAAAACATGGCACCCCTTGATGTAGCGATCTAA

Coding sequence (CDS)

ATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAAGCGAGGTTTCCGCTACACCCACAAACAAGCCCCAGACCCAGGCAACTGAGATCGTTACTCAGGGAAATAATGATGGAGGTAAGAGTGCATCAACAACATTGGTGGACCTGTCCAAATCCAACGAAACAAAACAGGACAAAGCTGGTGGAGATGTTGAGCTTGAGCCTGCCTCTGGAGTTCCTAATTATGATAAATCAACTGCTCTCAACCTTACCCAAGCGGAGAAAGTCGAAGGCATTGCCAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCAAGAACACTCAGACCAAGGAGGGCCACCCTAGGATGACGATTGGTGCGGATGCCGCCAAATTAGATGCCACTCCAACTCCAACCTCTGAACCCAAAAACATGGCACCCCTTGATGTAGCGATCTAA

Protein sequence

MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQDKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMTIGADAAKLDATPTPTSEPKNMAPLDVAI
Homology
[Close]
BLAST of CsaV3_4G009800 vs. NCBI nr
Match: XP_011653400.1 (PREDICTED: uncharacterized protein LOC105435210 [Cucumis sativus] >KGN53750.1 hypothetical protein Csa_4G120780 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 1.1e-73
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60
           MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ
Sbjct: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60

Query: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120
           DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT
Sbjct: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120

Query: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 149
           IGADAAKLDATPTPTSEPKNMAPLDVAI
Sbjct: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 148

[Close]
BLAST of CsaV3_4G009800 vs. TrEMBL
Match: tr|A0A0A0KVU8|A0A0A0KVU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G120780 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 7.3e-74
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60
           MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ
Sbjct: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60

Query: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120
           DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT
Sbjct: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120

Query: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 149
           IGADAAKLDATPTPTSEPKNMAPLDVAI
Sbjct: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 148

The following BLAST results are available for this feature:
BLAST of CsaV3_4G009800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653400.11.1e-73100.00PREDICTED: uncharacterized protein LOC105435210 [Cucumis sativus] >KGN53750.1 hy... [more]
BLAST of CsaV3_4G009800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009800 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVU8|A0A0A0KVU8_CUCSA7.3e-74100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G120780 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G009800.1CsaV3_4G009800.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..148

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G009800CSPI04G09640Wild cucumber (PI 183967)cpicucB213
CsaV3_4G009800CsGy4G009350Cucumber (Gy14) v2cgybcucB171
CsaV3_4G009800MELO3C024847Melon (DHL92) v3.5.1cucmeB319
CsaV3_4G009800MELO3C024847.2Melon (DHL92) v3.6.1cucmedB312
CsaV3_4G009800Bhi01G002518Wax gourdcucwgoB389
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G009800Silver-seed gourdcarcucB0859
CsaV3_4G009800Cucumber (Gy14) v1cgycucB279
CsaV3_4G009800Cucurbita maxima (Rimu)cmacucB0300
CsaV3_4G009800Cucurbita maxima (Rimu)cmacucB0568
CsaV3_4G009800Cucurbita moschata (Rifu)cmocucB0293
CsaV3_4G009800Cucurbita pepo (Zucchini)cpecucB0704
CsaV3_4G009800Cucurbita pepo (Zucchini)cpecucB0769
CsaV3_4G009800Bottle gourd (USVL1VR-Ls)cuclsiB332
CsaV3_4G009800Melon (DHL92) v3.5.1cucmeB318
CsaV3_4G009800Melon (DHL92) v3.6.1cucmedB310
CsaV3_4G009800Watermelon (Charleston Gray)cucwcgB346
CsaV3_4G009800Watermelon (97103) v1cucwmB318
CsaV3_4G009800Watermelon (97103) v2cucwmbB332
CsaV3_4G009800Wax gourdcucwgoB374