CsaV3_4G009630 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G009630
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 7351514 .. 7351868 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCATCTTCTTCTTCCTCTTCAAGAAATTCTAGCTACCGGGATACTTCGGTCTTCTTCTCCGTTCACAGTTGTCAGCCATATCCTTCAATAAGTCGGTTGTCGTCCATCTCTGTCTATTCTTCGGTCTCGGTTCTCTCCATTGGTTTGTCACCATGAAGTGGAAGCCAACTAAAGTGTCTCTATCCAATAAAGATCTATTCGTCGTACTGTCTTTCGATCTTTGTTCAATGTTCTCCATTCAGTTTGGTCTTTTTCAATCGTAGTCCGCCCCGCACACGATCCCCGATCAAGATCTCTACTTGAGCCACTTTCCTCTTACACCCGAGCCATCCCTTTTCTAGCTACCTGA

mRNA sequence

ATGACTTCATCTTCTTCTTCCTCTTCAAGAAATTCTAGCTACCGGGATACTTCGGTCTTCTTCTCCGTTCACAGTTGTCAGCCATATCCTTCAATAAGTCGGTTGTCGTCCATCTCTGTCTATTCTTCGGTCTCGGTTCTCTCCATTGTCCGCCCCGCACACGATCCCCGATCAAGATCTCTACTTGAGCCACTTTCCTCTTACACCCGAGCCATCCCTTTTCTAGCTACCTGA

Coding sequence (CDS)

ATGACTTCATCTTCTTCTTCCTCTTCAAGAAATTCTAGCTACCGGGATACTTCGGTCTTCTTCTCCGTTCACAGTTGTCAGCCATATCCTTCAATAAGTCGGTTGTCGTCCATCTCTGTCTATTCTTCGGTCTCGGTTCTCTCCATTGTCCGCCCCGCACACGATCCCCGATCAAGATCTCTACTTGAGCCACTTTCCTCTTACACCCGAGCCATCCCTTTTCTAGCTACCTGA

Protein sequence

MTSSSSSSSRNSSYRDTSVFFSVHSCQPYPSISRLSSISVYSSVSVLSIVRPAHDPRSRSLLEPLSSYTRAIPFLAT
Homology
[Close]
BLAST of CsaV3_4G009630 vs. NCBI nr
Match: KGN53730.1 (hypothetical protein Csa_4G112640 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 8.4e-25
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MTSSSSSSSRNSSYRDTSVFFSVHSCQPYPSISRLSSXXXXXXXXXXXIVRPAHDPRSRS 60
          MTSSSSSSSRNSSYRDTSVFFSVHSCQPYPSISRLSSXXXXXXXXXXXIVRPAHDPRSRS
Sbjct: 1  MTSSSSSSSRNSSYRDTSVFFSVHSCQPYPSISRLSSXXXXXXXXXXXIVRPAHDPRSRS 60

Query: 61 LLEPLSSYTRAIPFLAT 78
          LLEPLSSYTRAIPFLAT
Sbjct: 61 LLEPLSSYTRAIPFLAT 77

[Close]
BLAST of CsaV3_4G009630 vs. TrEMBL
Match: tr|A0A0A0KVS7|A0A0A0KVS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G112640 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-25
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MTSSSSSSSRNSSYRDTSVFFSVHSCQPYPSISRLSSXXXXXXXXXXXIVRPAHDPRSRS 60
          MTSSSSSSSRNSSYRDTSVFFSVHSCQPYPSISRLSSXXXXXXXXXXXIVRPAHDPRSRS
Sbjct: 1  MTSSSSSSSRNSSYRDTSVFFSVHSCQPYPSISRLSSXXXXXXXXXXXIVRPAHDPRSRS 60

Query: 61 LLEPLSSYTRAIPFLAT 78
          LLEPLSSYTRAIPFLAT
Sbjct: 61 LLEPLSSYTRAIPFLAT 77

The following BLAST results are available for this feature:
BLAST of CsaV3_4G009630 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53730.18.4e-25100.00hypothetical protein Csa_4G112640 [Cucumis sativus][more]
BLAST of CsaV3_4G009630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVS7|A0A0A0KVS7_CUCSA5.6e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G112640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G009630.1CsaV3_4G009630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G009630CsGy4G009220Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G009630Silver-seed gourdcarcucB0409
CsaV3_4G009630Silver-seed gourdcarcucB0911
CsaV3_4G009630Cucumber (Gy14) v1cgycucB604
CsaV3_4G009630Cucurbita maxima (Rimu)cmacucB0389
CsaV3_4G009630Cucurbita maxima (Rimu)cmacucB0856
CsaV3_4G009630Cucurbita moschata (Rifu)cmocucB0389
CsaV3_4G009630Cucurbita moschata (Rifu)cmocucB0841
CsaV3_4G009630Cucurbita pepo (Zucchini)cpecucB0267
CsaV3_4G009630Cucurbita pepo (Zucchini)cpecucB0512
CsaV3_4G009630Wild cucumber (PI 183967)cpicucB213
CsaV3_4G009630Bottle gourd (USVL1VR-Ls)cuclsiB297
CsaV3_4G009630Melon (DHL92) v3.5.1cucmeB319
CsaV3_4G009630Melon (DHL92) v3.6.1cucmedB312
CsaV3_4G009630Watermelon (Charleston Gray)cucwcgB280
CsaV3_4G009630Watermelon (97103) v1cucwmB304
CsaV3_4G009630Watermelon (97103) v2cucwmbB274
CsaV3_4G009630Wax gourdcucwgoB362