CsaV3_4G009150 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G009150
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	hydroxyproline-rich glycoprotein family protein
Location	chr4 : 6727756 .. 6729164 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAGGCATGTTTAGTTCAAAATGATGTAAAATGGCATCCATTTTAGGCCAAATTTCGACCGTTAGAAAGTATTTTTGTTTGTTTCACTTTTTCCTTATCTCCCAACGTTCACTATCCTCACTCCTCGGTCCTTACACAGCAACGGCTCTTCTCTGTCTCCCATATTAAATAAATCTCAACCCAAATCCTATTCCAATTCCTCCATTACTTTCTCTTCTTCTTCTTCCTCTTTTTCAAGCAAATCTTATTCTAATGGAGCTTCTCACCCAGCCACACCTTCAACTTTCAGACTCTGAGGATGCCCAAACGACAGCGATCCTAATCCCAGAACTTGACAAAGAGTTGAAAATTTCAAATTCTGAGTCTAAAACTACAACCCCACATGAGAAAACAGAAGAAAAACAAAGGATTTTTGTTTCTGAAAAGGTATCCAAGGTGCCAAAAAGCCCTAGAGAGCTGATTGTGCAGTGTGAAACTCCAACTCCAAACGAGAAAACAGAGGAAAAAGAGAGGATTTTGGTCCCAAAAAATGGGTCAATGGATCGATCCAAGGTGCCAAAAAGCCCTGCAAAGGTGAATTTGGAGTGTAAAACTCCGATACAAAGAGTGAAAATGGGAGGTATTGAGTTACCTAAAAATGGTACTCCTAATCGCCTCAAACTCCCCGTCGCATTCAAATATCCGGAGAGGTACTCTTGCTTTAAACTTAGACTCTGAACTCTTGGAGTTTTAATTAGAGAACTAAAGAAGATTGAATGAATGAATGAGTTGATATGTTGCTGCTGTGTTTAGGTATAAAAGTCCCACTGATATGATGATTTCTCCCATCAGCAAAGGCCTTCTTGCCAGAACAAGGAAAGGAGCGGTTCCTTCCAAGGTTTCTAGAACTCTTTCTTTCTCAACTCTTTATTAATTACTACCGAAAATGTAATTATTGATCTATAAAAATAAATGAATAATTAATTTCACATTTAATCTGTTGAGTTTTATTCAATTTCAGTCCTTGTGTTAAATGCATTCATGTCGATCTTGAGTTGCTTTTGTTGACTATTTTTTATTTTTGAAGTTTTTTTTTAAATTTTAGTCTTTTTGTTTGATGGCAGATGCATGAGTTGAGAAATTCAGAGATGAGCCTTCTATCTCAGAGCTGAACAAGATAAATGGCTATAAAAAAAAAAAAAAAAACTTCACGGATTCTATTCGTTTTCATCTTCAAGAATTTGCTCCACTCAAGCTGTGATGCAAAAATCTACCGAGCTTCTTTTTAGAAGAAGAACATTATTCTATTTCCATCCACTTTTATCTCCTCATTACTTTGTTTAACGTTTCTTTCAATCTGCTCTTGTGAATTATTATGTCATATAATATTGTGGGTTAGTGGGTTAATTTTTCCCCTCTCAAGTGCT

mRNA sequence

ATGGAGCTTCTCACCCAGCCACACCTTCAACTTTCAGACTCTGAGGATGCCCAAACGACAGCGATCCTAATCCCAGAACTTGACAAAGAGTTGAAAATTTCAAATTCTGAGTCTAAAACTACAACCCCACATGAGAAAACAGAAGAAAAACAAAGGATTTTTGTTTCTGAAAAGGTATCCAAGGTGCCAAAAAGCCCTAGAGAGCTGATTGTGCAGTGTGAAACTCCAACTCCAAACGAGAAAACAGAGGAAAAAGAGAGGATTTTGGTCCCAAAAAATGGGTCAATGGATCGATCCAAGGTGCCAAAAAGCCCTGCAAAGGTGAATTTGGAGTGTAAAACTCCGATACAAAGAGTGAAAATGGGAGGTATTGAGTTACCTAAAAATGGTACTCCTAATCGCCTCAAACTCCCCGTCGCATTCAAATATCCGGAGAGGTATAAAAGTCCCACTGATATGATGATTTCTCCCATCAGCAAAGGCCTTCTTGCCAGAACAAGGAAAGGAGCGGTTCCTTCCAAGATGCATGAGTTGAGAAATTCAGAGATGAGCCTTCTATCTCAGAGCTGA

Coding sequence (CDS)

ATGGAGCTTCTCACCCAGCCACACCTTCAACTTTCAGACTCTGAGGATGCCCAAACGACAGCGATCCTAATCCCAGAACTTGACAAAGAGTTGAAAATTTCAAATTCTGAGTCTAAAACTACAACCCCACATGAGAAAACAGAAGAAAAACAAAGGATTTTTGTTTCTGAAAAGGTATCCAAGGTGCCAAAAAGCCCTAGAGAGCTGATTGTGCAGTGTGAAACTCCAACTCCAAACGAGAAAACAGAGGAAAAAGAGAGGATTTTGGTCCCAAAAAATGGGTCAATGGATCGATCCAAGGTGCCAAAAAGCCCTGCAAAGGTGAATTTGGAGTGTAAAACTCCGATACAAAGAGTGAAAATGGGAGGTATTGAGTTACCTAAAAATGGTACTCCTAATCGCCTCAAACTCCCCGTCGCATTCAAATATCCGGAGAGGTATAAAAGTCCCACTGATATGATGATTTCTCCCATCAGCAAAGGCCTTCTTGCCAGAACAAGGAAAGGAGCGGTTCCTTCCAAGATGCATGAGTTGAGAAATTCAGAGATGAGCCTTCTATCTCAGAGCTGA

Protein sequence

MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVSKVPKSPRELIVQCETPTPNEKTEEKERILVPKNGSMDRSKVPKSPAKVNLECKTPIQRVKMGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRNSEMSLLSQS

Homology

[Close]

BLAST of CsaV3_4G009150 vs. NCBI nr
Match: XP_011653365.1 (PREDICTED: uncharacterized protein LOC105435203 [Cucumis sativus] >KGN53676.1 hypothetical protein Csa_4G101270 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60
           MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS
Sbjct: 1   MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60

Query: 61  KVPKSPRELIVXXXXXXXXXXXXXXXXXXXXXNGSMDRXXXXXXXXXXXXXXXXXXXXXK 120
           KVPKSPRELIVXXXXXXXXXXXXXXXXXXXXXNGSMDRXXXXXXXXXXXXXXXXXXXXXK
Sbjct: 61  KVPKSPRELIVXXXXXXXXXXXXXXXXXXXXXNGSMDRXXXXXXXXXXXXXXXXXXXXXK 120

Query: 121 MGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRN 180
           MGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRN
Sbjct: 121 MGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRN 180

Query: 181 SEMSLLSQS 190
           SEMSLLSQS
Sbjct: 181 SEMSLLSQS 189

[Close]

BLAST of CsaV3_4G009150 vs. NCBI nr
Match: XP_008462927.1 (PREDICTED: uncharacterized protein LOC103501189 [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 1.6e-53
Identity = 163/189 (86.24%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60
           ME+LT+ H+QLSDS+D+QT AILIPELDK+L+ISNSE KTTTP EKTEEKQR+FV  K S
Sbjct: 1   MEVLTRSHVQLSDSDDSQTAAILIPELDKKLEISNSECKTTTPDEKTEEKQRVFVPGKES 60

Query: 61  KVPKSPRELIVXXXXXXXXXXXXXXXXXXXXXNGSMDRXXXXXXXXXXXXXXXXXXXXXK 120
           KVPKSP +   XXXXXXXXXXXXXXXXXXXXX GSMD XXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  KVPKSPTKXXXXXXXXXXXXXXXXXXXXXXXXXGSMDXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 MGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRN 180
           +GGIELPKNGTPNRLKLP+AFKYPERYKSPTD+MISPISKGLLARTRKGAVPSKMHELRN
Sbjct: 121 IGGIELPKNGTPNRLKLPIAFKYPERYKSPTDLMISPISKGLLARTRKGAVPSKMHELRN 180

Query: 181 SEMSLLSQS 190
           SEMSLLSQS
Sbjct: 181 SEMSLLSQS 189

[Close]

BLAST of CsaV3_4G009150 vs. NCBI nr
Match: XP_022948389.1 (uncharacterized protein LOC111452080 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 7.3e-22
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 122 GGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRNS 181
           GGI LPKNGTPNRLK+P AFKY ERY SPTD+M+SPI+KGLLARTRKGAVPSKMHELR S
Sbjct: 109 GGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRIS 168

Query: 182 EMSLLS 188
           EMSL S
Sbjct: 169 EMSLHS 174

[Close]

BLAST of CsaV3_4G009150 vs. NCBI nr
Match: XP_023525350.1 (uncharacterized protein LOC111788976 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 122 GGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRNS 181
           GGI LP+NGTPNRLK+P AFKY ERY SPTD+M+SPI+KGLLARTRKGAVPSKMHELR S
Sbjct: 109 GGIALPRNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRIS 168

Query: 182 EMSLLS 188
           EMSL S
Sbjct: 169 EMSLHS 174

[Close]

BLAST of CsaV3_4G009150 vs. NCBI nr
Match: XP_022998048.1 (uncharacterized protein LOC111492813 [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 122 GGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRNS 181
           GGI  PKNGTPNRLK+P AFKY ERY SPTD+M+SPI+KGLLARTRKGAVPSKMHELR S
Sbjct: 109 GGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRIS 168

Query: 182 EMSLLS 188
           EMSL S
Sbjct: 169 EMSLHS 174

[Close]

BLAST of CsaV3_4G009150 vs. TAIR10
Match: AT3G02120.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 126 LPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGA---VP-----SKMHE 185
           + K GTP RL++P+AFKYPERY+SPTD M+SP++KGLLARTRK +   +P     +K+ E
Sbjct: 54  MKKIGTPERLRVPIAFKYPERYRSPTDAMMSPVTKGLLARTRKSSGSLIPPSFNQTKIQE 113

Query: 186 LRNSEMSLLSQS 190
           LR  E  L S S
Sbjct: 114 LRKPESGLSSVS 125

[Close]

BLAST of CsaV3_4G009150 vs. TrEMBL
Match: tr|A0A0A0L0M1|A0A0A0L0M1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101270 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 7.6e-68
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60
           MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS
Sbjct: 1   MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60

Query: 61  KVPKSPRELIVXXXXXXXXXXXXXXXXXXXXXNGSMDRXXXXXXXXXXXXXXXXXXXXXK 120
           KVPKSPRELIVXXXXXXXXXXXXXXXXXXXXXNGSMDRXXXXXXXXXXXXXXXXXXXXXK
Sbjct: 61  KVPKSPRELIVXXXXXXXXXXXXXXXXXXXXXNGSMDRXXXXXXXXXXXXXXXXXXXXXK 120

Query: 121 MGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRN 180
           MGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRN
Sbjct: 121 MGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRN 180

Query: 181 SEMSLLSQS 190
           SEMSLLSQS
Sbjct: 181 SEMSLLSQS 189

[Close]

BLAST of CsaV3_4G009150 vs. TrEMBL
Match: tr|A0A1S3CI15|A0A1S3CI15_CUCME (uncharacterized protein LOC103501189 OS=Cucumis melo OX=3656 GN=LOC103501189 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 163/189 (86.24%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60
           ME+LT+ H+QLSDS+D+QT AILIPELDK+L+ISNSE KTTTP EKTEEKQR+FV  K S
Sbjct: 1   MEVLTRSHVQLSDSDDSQTAAILIPELDKKLEISNSECKTTTPDEKTEEKQRVFVPGKES 60

Query: 61  KVPKSPRELIVXXXXXXXXXXXXXXXXXXXXXNGSMDRXXXXXXXXXXXXXXXXXXXXXK 120
           KVPKSP +   XXXXXXXXXXXXXXXXXXXXX GSMD XXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  KVPKSPTKXXXXXXXXXXXXXXXXXXXXXXXXXGSMDXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 MGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELRN 180
           +GGIELPKNGTPNRLKLP+AFKYPERYKSPTD+MISPISKGLLARTRKGAVPSKMHELRN
Sbjct: 121 IGGIELPKNGTPNRLKLPIAFKYPERYKSPTDLMISPISKGLLARTRKGAVPSKMHELRN 180

Query: 181 SEMSLLSQS 190
           SEMSLLSQS
Sbjct: 181 SEMSLLSQS 189

[Close]

BLAST of CsaV3_4G009150 vs. TrEMBL
Match: tr|A0A1Q3BCY6|A0A1Q3BCY6_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09196 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 120 KMGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAV-------P 179
           K  GI++ K  TP+ L++P AFKYPERY+SPTD M+SP+SKGLLAR RKG V        
Sbjct: 37  KDSGIDMCKTSTPDSLEVPKAFKYPERYRSPTDSMMSPVSKGLLARNRKGGVLLPSSIIQ 96

Query: 180 SKMHELRNSEMSLL 187
           +K+ ELR  ++ LL
Sbjct: 97  TKIQELRVQDVGLL 110

[Close]

BLAST of CsaV3_4G009150 vs. TrEMBL
Match: tr|B9SNP6|B9SNP6_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1025190 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 125 ELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGA--VPSKMHELR 180
           +L K+ TP+RLK+P AFKYPERY+SPTD+M+SPI+KGLLAR RKGA  +P  M++ +
Sbjct: 41  DLRKSSTPDRLKVPKAFKYPERYRSPTDLMVSPITKGLLARNRKGAALLPPSMNQAK 97

[Close]

BLAST of CsaV3_4G009150 vs. TrEMBL
Match: tr|A0A1R3KSB7|A0A1R3KSB7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04934 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 123 GIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGA---VP-----SK 182
           G +L K  TP+RLK+P AFKYPERY+SPTD M+SP++KG+LAR RKGA   +P     +K
Sbjct: 40  GNDLKKTCTPDRLKVPKAFKYPERYRSPTDSMMSPVTKGILARNRKGAGSLLPPSINQTK 99

Query: 183 MHELRNSEMSL 186
           +HELR  ++ L
Sbjct: 100 IHELRVQDVGL 110

The following BLAST results are available for this feature:

BLAST of CsaV3_4G009150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653365.1	1.1e-67	100.00	PREDICTED: uncharacterized protein LOC105435203 [Cucumis sativus] >KGN53676.1 hy...	[more]
XP_008462927.1	1.6e-53	86.24	PREDICTED: uncharacterized protein LOC103501189 [Cucumis melo]	[more]
XP_022948389.1	7.3e-22	84.85	uncharacterized protein LOC111452080 [Cucurbita moschata]	[more]
XP_023525350.1	1.6e-21	83.33	uncharacterized protein LOC111788976 [Cucurbita pepo subsp. pepo]	[more]
XP_022998048.1	2.1e-21	83.33	uncharacterized protein LOC111492813 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G009150 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02120.1	1.4e-14	55.56	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CsaV3_4G009150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G009150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0M1\|A0A0A0L0M1_CUCSA	7.6e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101270 PE=4 SV=1	[more]
tr\|A0A1S3CI15\|A0A1S3CI15_CUCME	1.1e-53	86.24	uncharacterized protein LOC103501189 OS=Cucumis melo OX=3656 GN=LOC103501189 PE=...	[more]
tr\|A0A1Q3BCY6\|A0A1Q3BCY6_CEPFO	1.7e-11	54.05	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09196 PE=4...	[more]
tr\|B9SNP6\|B9SNP6_RICCO	2.9e-11	63.16	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1025190 PE=4 SV=1	[more]
tr\|A0A1R3KSB7\|A0A1R3KSB7_9ROSI	2.9e-11	56.34	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04934 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G009150.1	CsaV3_4G009150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..189
None	No IPR available	PANTHER	PTHR36747	FAMILY NOT NAMED	coord: 69..169

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G009150	CSPI04G08950	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G009150	Cucsa.397790	Cucumber (Gy14) v1	cgycucB604
CsaV3_4G009150	CsGy4G008770	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None