CsaV3_4G009050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G009050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionEn/Spm-like transposon protein
Locationchr4 : 6554186 .. 6554447 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGTTACTACCAACACTCGCCATAAGTGTTTGCTACTAGATTGGGTTGTTTCAGGAGAAATCATTGTTGAAGGTAGATGGTCTTCCAATGATCCATCAATTCTTGTTTCCCATGTTCCTCTTGGCCCTAATGTAGTTCGGGTGTGGGTTGATACAGTGAAAATACCAAATTTCTTCTTATGGAGACGTACCTCTGACATTATTGTTATTGACAATGTTGTGGGCACTACTATAGCATGGCTGATGGATGAAGCCAAACTAT

mRNA sequence

AGTGTTACTACCAACACTCGCCATAAGTGTTTGCTACTAGATTGGGTTGTTTCAGGAGAAATCATTGTTGAAGGTAGATGGTCTTCCAATGATCCATCAATTCTTGTTTCCCATGTTCCTCTTGGCCCTAATGTAGTTCGGGTGTGGGTTGATACAGTGAAAATACCAAATTTCTTCTTATGGAGACGTACCTCTGACATTATTGTTATTGACAATGTTGTGGGCACTACTATAGCATGGCTGATGGATGAAGCCAAACTAT

Coding sequence (CDS)

AGTGTTACTACCAACACTCGCCATAAGTGTTTGCTACTAGATTGGGTTGTTTCAGGAGAAATCATTGTTGAAGGTAGATGGTCTTCCAATGATCCATCAATTCTTGTTTCCCATGTTCCTCTTGGCCCTAATGTAGTTCGGGTGTGGGTTGATACAGTGAAAATACCAAATTTCTTCTTATGGAGACGTACCTCTGACATTATTGTTATTGACAATGTTGTGGGCACTACTATAGCATGGCTGATGGATGAAGCCAAACTAT

Protein sequence

SVTTNTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFLWRRTSDIIVIDNVVGTTIAWLMDEAKLX
Homology
[Close]
BLAST of CsaV3_4G009050 vs. NCBI nr
Match: XP_022154305.1 (uncharacterized protein LOC111021601 isoform X1 [Momordica charantia])

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 0 

Query: 1   SVTTNTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFL 60
           ++  N   KC+LLDW+ SG++I EGRWSSNDPS+LV H+PLGPNVVRVWVDTVK PN +L
Sbjct: 167 TINDNAPRKCMLLDWIGSGKVIAEGRWSSNDPSVLVHHIPLGPNVVRVWVDTVKKPNSYL 226

Query: 61  WRRTSDIIVIDNVVGTTIAWLMDEAKL 88
           WR TSD++VIDN +GTTIAW  D+ K+
Sbjct: 227 WRPTSDMMVIDNALGTTIAWPADKVKI 253

[Close]
BLAST of CsaV3_4G009050 vs. NCBI nr
Match: XP_022154306.1 (uncharacterized protein LOC111021601 isoform X2 [Momordica charantia])

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 0 

Query: 1   SVTTNTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFL 60
           ++  N   KC+LLDW+ SG++I EGRWSSNDPS+LV H+PLGPNVVRVWVDTVK PN +L
Sbjct: 117 TINDNAPRKCMLLDWIGSGKVIAEGRWSSNDPSVLVHHIPLGPNVVRVWVDTVKKPNSYL 176

Query: 61  WRRTSDIIVIDNVVGTTIAWLMDEAKL 88
           WR TSD++VIDN +GTTIAW  D+ K+
Sbjct: 177 WRPTSDMMVIDNALGTTIAWPADKVKI 203

[Close]
BLAST of CsaV3_4G009050 vs. NCBI nr
Match: XP_022883204.1 (uncharacterized protein LOC111399957 [Olea europaea var. sylvestris])

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 0 

Query: 1   SVTTNT-RHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFF 60
           SV TNT  +KC LLDW   GE + EGRWSSNDP ILV HVPLGPN  RVWVD    P+ F
Sbjct: 61  SVNTNTLNNKCKLLDWTGKGEEVAEGRWSSNDPKILVHHVPLGPNAARVWVDVAMKPDAF 120

Query: 61  LWRRTSDIIVIDNVVGTTIAWLMDE 85
           LWR T DI  I+  VGTT+AW +D+
Sbjct: 121 LWRPTCDITYIEECVGTTVAWPIDK 145

[Close]
BLAST of CsaV3_4G009050 vs. NCBI nr
Match: XP_016903682.1 (PREDICTED: uncharacterized protein LOC103504411 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 2.6e-22
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1   SVTTNTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFL 60
           S+  N++ KC LLDW  SGEI+ EGRWSSNDP+ +V HVP+GP+ +RVWVD  K PN +L
Sbjct: 57  SINNNSQTKCKLLDWYGSGEIVAEGRWSSNDPTAMVYHVPIGPHAIRVWVDVAKKPNAYL 116

Query: 61  WRRTSDIIVIDNVVGTTIAWLMDE 85
           WR TS++  I+  +G+T+AW  D+
Sbjct: 117 WRPTSEMTCIEEALGSTVAWPSDK 140

[Close]
BLAST of CsaV3_4G009050 vs. NCBI nr
Match: XP_008467069.2 (PREDICTED: uncharacterized protein LOC103504506 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-21
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 1   SVTTNTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFL 60
           S+  N++ KC LLDW   GEI+ EGRWSSNDP+ +V H+P+GP+ +RVWVD  K PN +L
Sbjct: 43  SINNNSQTKCKLLDWYGLGEIVAEGRWSSNDPTAMVHHIPIGPHAIRVWVDVAKKPNAYL 102

Query: 61  WRRTSDIIVIDNVVGTTIAWLMDE 85
           WR TS++  I+  +G+T+AW  D+
Sbjct: 103 WRPTSEMTCIEEALGSTVAWPSDK 126

[Close]
BLAST of CsaV3_4G009050 vs. TrEMBL
Match: tr|A0A1S4E638|A0A1S4E638_CUCME (uncharacterized protein LOC103504411 OS=Cucumis melo OX=3656 GN=LOC103504411 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1   SVTTNTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFL 60
           S+  N++ KC LLDW  SGEI+ EGRWSSNDP+ +V HVP+GP+ +RVWVD  K PN +L
Sbjct: 57  SINNNSQTKCKLLDWYGSGEIVAEGRWSSNDPTAMVYHVPIGPHAIRVWVDVAKKPNAYL 116

Query: 61  WRRTSDIIVIDNVVGTTIAWLMDE 85
           WR TS++  I+  +G+T+AW  D+
Sbjct: 117 WRPTSEMTCIEEALGSTVAWPSDK 140

[Close]
BLAST of CsaV3_4G009050 vs. TrEMBL
Match: tr|A0A1S3CSU8|A0A1S3CSU8_CUCME (uncharacterized protein LOC103504506 OS=Cucumis melo OX=3656 GN=LOC103504506 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.5e-22
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 1   SVTTNTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFL 60
           S+  N++ KC LLDW   GEI+ EGRWSSNDP+ +V H+P+GP+ +RVWVD  K PN +L
Sbjct: 43  SINNNSQTKCKLLDWYGLGEIVAEGRWSSNDPTAMVHHIPIGPHAIRVWVDVAKKPNAYL 102

Query: 61  WRRTSDIIVIDNVVGTTIAWLMDE 85
           WR TS++  I+  +G+T+AW  D+
Sbjct: 103 WRPTSEMTCIEEALGSTVAWPSDK 126

[Close]
BLAST of CsaV3_4G009050 vs. TrEMBL
Match: tr|A0A1S4E621|A0A1S4E621_CUCME (uncharacterized protein LOC107992334 OS=Cucumis melo OX=3656 GN=LOC107992334 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 1   SVTTNTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFL 60
           S+  N++ KC LLDW  SGEI+ EGRWSSNDP+ LV HVP+GP+ +RVWVD  K  N +L
Sbjct: 82  SINNNSQTKCKLLDWYGSGEIVTEGRWSSNDPTALVHHVPIGPHAIRVWVDVAKKSNAYL 141

Query: 61  WRRTSDIIVIDNVVGTTIAWLMDE 85
           WR TS++  I+  +G+T AW  D+
Sbjct: 142 WRPTSEMTCIEEALGSTFAWPSDK 165

[Close]
BLAST of CsaV3_4G009050 vs. TrEMBL
Match: tr|A0A1S4DZ27|A0A1S4DZ27_CUCME (uncharacterized protein LOC103493280 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493280 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-20
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 0 

Query: 5   NTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFLWRRT 64
           N   KC +LDW  +GE++ EGRWSSNDP ++V HVPLGP  VRVWVD  K P+ FLWR  
Sbjct: 868 NALRKCKMLDWCGTGEVVAEGRWSSNDPKVIVHHVPLGPQAVRVWVDLPKRPDAFLWRPN 927

Query: 65  SDIIVIDNVVGTTIAWLMDE 85
           S++  + + VG+TIAW  D+
Sbjct: 928 SEMTYVKDAVGSTIAWPFDK 947

[Close]
BLAST of CsaV3_4G009050 vs. TrEMBL
Match: tr|A0A1S4DZ36|A0A1S4DZ36_CUCME (uncharacterized protein LOC103493280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493280 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-20
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 0 

Query: 5   NTRHKCLLLDWVVSGEIIVEGRWSSNDPSILVSHVPLGPNVVRVWVDTVKIPNFFLWRRT 64
           N   KC +LDW  +GE++ EGRWSSNDP ++V HVPLGP  VRVWVD  K P+ FLWR  
Sbjct: 869 NALRKCKMLDWCGTGEVVAEGRWSSNDPKVIVHHVPLGPQAVRVWVDLPKRPDAFLWRPN 928

Query: 65  SDIIVIDNVVGTTIAWLMDE 85
           S++  + + VG+TIAW  D+
Sbjct: 929 SEMTYVKDAVGSTIAWPFDK 948

The following BLAST results are available for this feature:
BLAST of CsaV3_4G009050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154305.12.2e-2966.67uncharacterized protein LOC111021601 isoform X1 [Momordica charantia][more]
XP_022154306.12.2e-2966.67uncharacterized protein LOC111021601 isoform X2 [Momordica charantia][more]
XP_022883204.11.2e-2262.35uncharacterized protein LOC111399957 [Olea europaea var. sylvestris][more]
XP_016903682.12.6e-2254.76PREDICTED: uncharacterized protein LOC103504411 [Cucumis melo][more]
XP_008467069.21.3e-2152.38PREDICTED: uncharacterized protein LOC103504506 [Cucumis melo][more]
BLAST of CsaV3_4G009050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E638|A0A1S4E638_CUCME1.7e-2254.76uncharacterized protein LOC103504411 OS=Cucumis melo OX=3656 GN=LOC103504411 PE=... [more]
tr|A0A1S3CSU8|A0A1S3CSU8_CUCME8.5e-2252.38uncharacterized protein LOC103504506 OS=Cucumis melo OX=3656 GN=LOC103504506 PE=... [more]
tr|A0A1S4E621|A0A1S4E621_CUCME1.4e-2154.76uncharacterized protein LOC107992334 OS=Cucumis melo OX=3656 GN=LOC107992334 PE=... [more]
tr|A0A1S4DZ27|A0A1S4DZ27_CUCME1.6e-2055.00uncharacterized protein LOC103493280 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4DZ36|A0A1S4DZ36_CUCME1.6e-2055.00uncharacterized protein LOC103493280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G009050.1CsaV3_4G009050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G009050Bhi11G000799Wax gourdcucwgoB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G009050Watermelon (97103) v2cucwmbB278
CsaV3_4G009050Silver-seed gourdcarcucB0981
CsaV3_4G009050Silver-seed gourdcarcucB1062
CsaV3_4G009050Cucumber (Gy14) v2cgybcucB171
CsaV3_4G009050Cucumber (Gy14) v1cgycucB604
CsaV3_4G009050Cucurbita maxima (Rimu)cmacucB0390
CsaV3_4G009050Cucurbita maxima (Rimu)cmacucB0845
CsaV3_4G009050Cucurbita moschata (Rifu)cmocucB0386
CsaV3_4G009050Cucurbita moschata (Rifu)cmocucB0831
CsaV3_4G009050Cucurbita pepo (Zucchini)cpecucB0264
CsaV3_4G009050Cucurbita pepo (Zucchini)cpecucB0501
CsaV3_4G009050Wild cucumber (PI 183967)cpicucB213
CsaV3_4G009050Melon (DHL92) v3.5.1cucmeB304
CsaV3_4G009050Melon (DHL92) v3.5.1cucmeB326
CsaV3_4G009050Melon (DHL92) v3.6.1cucmedB296
CsaV3_4G009050Melon (DHL92) v3.6.1cucmedB319
CsaV3_4G009050Watermelon (Charleston Gray)cucwcgB284