CsaV3_4G008580 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G008580
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pleiotropic drug resistance protein 3-like
Location	chr4 : 6083627 .. 6083975 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGATAGCTTAGCTTCAATCTTCCAAAGCAATGGTGCTTCCTTTACCGTAGGTAATTTTGTAATATTATTTGCCTTGTTATTTGGTGGCTTCATCATCTTACATCATAAGTTTTCTTAATAACTAAGGTCTTTGTTAGATTACGATTTCATTATTTGAAACTACGTACGTTTCATTTCTCCCGCAGTATGATATTAAAGCATCATAGAGAGAGTTTGATTTTCAATTTTTGAAATTATGCAGCATCCATGCCAGCTTGGTTGAAATGGGGTTTTCGGGTTTCACCAATAAGTTACGGAGAAATTGGCCTTTCTCTGAATGAATTTCTCGCACCAAGGTGGCAAAACGG

mRNA sequence

AATGATAGCTTAGCTTCAATCTTCCAAAGCAATGGTGCTTCCTTTACCGTAGCATCCATGCCAGCTTGGTTGAAATGGGGTTTTCGGGTTTCACCAATAAGTTACGGAGAAATTGGCCTTTCTCTGAATGAATTTCTCGCACCAAGGTGGCAAAACGG

Coding sequence (CDS)

AATGATAGCTTAGCTTCAATCTTCCAAAGCAATGGTGCTTCCTTTACCGTAGCATCCATGCCAGCTTGGTTGAAATGGGGTTTTCGGGTTTCACCAATAAGTTACGGAGAAATTGGCCTTTCTCTGAATGAATTTCTCGCACCAAGGTGGCAAAACGG

Protein sequence

NDSLASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQNX

Homology

[Close]

BLAST of CsaV3_4G008580 vs. NCBI nr
Match: XP_018845350.1 (PREDICTED: pleiotropic drug resistance protein 3-like [Juglans regia])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 4   LASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           LASIF++N ASFT ASMP WL+WGF VSPI+YGEIGLSLNEFLAPRWQ
Sbjct: 416 LASIFRTNNASFTAASMPVWLRWGFWVSPITYGEIGLSLNEFLAPRWQ 463

[Close]

BLAST of CsaV3_4G008580 vs. NCBI nr
Match: XP_018814339.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Juglans regia])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 4   LASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           LASIF++N ASFT ASMP WL+WGF VSPI+YGEIGLSLNEFLAPRWQ
Sbjct: 141 LASIFRTNNASFTAASMPVWLRWGFWVSPITYGEIGLSLNEFLAPRWQ 188

[Close]

BLAST of CsaV3_4G008580 vs. NCBI nr
Match: XP_011652141.1 (PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] >KGN59365.1 hypothetical protein Csa_3G814320 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-14
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 4   LASIFQSNGASFTVA------------------SMPAWLKWGFRVSPISYGEIGLSLNEF 52
           +ASIFQSNGASFTV                   S+PAWLKWGF VSPISYGEIGLSLNEF
Sbjct: 677 IASIFQSNGASFTVGNFVILFALLFGGFIISHPSIPAWLKWGFWVSPISYGEIGLSLNEF 736

[Close]

BLAST of CsaV3_4G008580 vs. NCBI nr
Match: XP_008443150.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 41/66 (62.12%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 4   LASIFQSNGASFTVA------------------SMPAWLKWGFRVSPISYGEIGLSLNEF 52
           ++SIFQS+GAS TV                   SMPAWL+WGF VSPISYGEIGLSLNEF
Sbjct: 683 ISSIFQSHGASITVGNFAILFALLFGGFIISHPSMPAWLEWGFWVSPISYGEIGLSLNEF 742

[Close]

BLAST of CsaV3_4G008580 vs. NCBI nr
Match: XP_008443151.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 41/66 (62.12%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 4   LASIFQSNGASFTVA------------------SMPAWLKWGFRVSPISYGEIGLSLNEF 52
           ++SIFQS+GAS TV                   SMPAWL+WGF VSPISYGEIGLSLNEF
Sbjct: 497 ISSIFQSHGASITVGNFAILFALLFGGFIISHPSMPAWLEWGFWVSPISYGEIGLSLNEF 556

[Close]

BLAST of CsaV3_4G008580 vs. TAIR10
Match: AT2G37280.1 (pleiotropic drug resistance 5)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-12
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 4   LASIFQSNGASFTVAS------------------MPAWLKWGFRVSPISYGEIGLSLNEF 52
           +A+IFQ+  A+ T  S                  MP WLKWGF V+PISY EIGLS+NEF
Sbjct: 643 IAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEF 702

[Close]

BLAST of CsaV3_4G008580 vs. TAIR10
Match: AT3G53480.1 (pleiotropic drug resistance 9)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-12
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 4   LASIFQSNGASFTVA------------------SMPAWLKWGFRVSPISYGEIGLSLNEF 51
           LA+IFQ+  AS T                    SMPAWLKWGF  +P+SYGEIGLS+NEF
Sbjct: 678 LAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEF 737

[Close]

BLAST of CsaV3_4G008580 vs. TAIR10
Match: AT4G15233.2 (ABC-2 and Plant PDR ABC-type transporter family protein)

HSP 1 Score: 60.5 bits (145), Expect = 3.7e-10
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 19  SMPAWLKWGFRVSPISYGEIGLSLNEFLAPRW 51
           SMP+WL+WGF +SP+SY EIGL+ NEF APRW
Sbjct: 677 SMPSWLEWGFWLSPLSYAEIGLTANEFFAPRW 708

[Close]

BLAST of CsaV3_4G008580 vs. TAIR10
Match: AT4G15230.1 (pleiotropic drug resistance 2)

HSP 1 Score: 59.7 bits (143), Expect = 6.3e-10
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 18  ASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRW 51
           +SMPAWL WGF +SP+SY EIGL+ NEF +PRW
Sbjct: 677 SSMPAWLGWGFWLSPLSYAEIGLTANEFFSPRW 709

[Close]

BLAST of CsaV3_4G008580 vs. TAIR10
Match: AT4G15215.1 (pleiotropic drug resistance 13)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-09
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 18  ASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           +SMP WL WGF +SP+SY EIGL+ NEF +PRW+
Sbjct: 667 SSMPTWLGWGFWLSPLSYAEIGLTANEFFSPRWR 700

[Close]

BLAST of CsaV3_4G008580 vs. Swiss-Prot
Match: sp|Q9ZUT8|AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-11
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 4   LASIFQSNGASFTVAS------------------MPAWLKWGFRVSPISYGEIGLSLNEF 52
           +A+IFQ+  A+ T  S                  MP WLKWGF V+PISY EIGLS+NEF
Sbjct: 643 IAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEF 702

[Close]

BLAST of CsaV3_4G008580 vs. Swiss-Prot
Match: sp|Q9LFH0|AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-11
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 4   LASIFQSNGASFTVA------------------SMPAWLKWGFRVSPISYGEIGLSLNEF 51
           LA+IFQ+  AS T                    SMPAWLKWGF  +P+SYGEIGLS+NEF
Sbjct: 678 LAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEF 737

[Close]

BLAST of CsaV3_4G008580 vs. Swiss-Prot
Match: sp|Q5W274|PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-11
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 19  SMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           SMP WLKWGF +SP++YGEIGL++NEFLAPRWQ
Sbjct: 709 SMPIWLKWGFWISPLTYGEIGLAVNEFLAPRWQ 741

[Close]

BLAST of CsaV3_4G008580 vs. Swiss-Prot
Match: sp|Q8GU83|AB41G_ORYSJ (ABC transporter G family member 41 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG41 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-09
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 19  SMPAWLKWGFRVSPISYGEIGLSLNEFLAPRW 51
           SMP WLKWGF +SP+SY EIGL+ NEFLAPRW
Sbjct: 696 SMPNWLKWGFWISPLSYAEIGLTGNEFLAPRW 727

[Close]

BLAST of CsaV3_4G008580 vs. Swiss-Prot
Match: sp|Q2QV81|AB49G_ORYSJ (ABC transporter G family member 49 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG49 PE=2 SV=3)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-09
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 3   SLASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRW 51
           SL  I    G      SMP WLKWGF +SP+SY EIGL+ NEFLAPRW
Sbjct: 733 SLLVILLFGGFLIPRPSMPNWLKWGFWLSPLSYAEIGLTGNEFLAPRW 780

[Close]

BLAST of CsaV3_4G008580 vs. TrEMBL
Match: tr|A0A2I4E4L5|A0A2I4E4L5_9ROSI (pleiotropic drug resistance protein 3-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108986237 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 4   LASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           LASIF++N ASFT ASMP WL+WGF VSPI+YGEIGLSLNEFLAPRWQ
Sbjct: 141 LASIFRTNNASFTAASMPVWLRWGFWVSPITYGEIGLSLNEFLAPRWQ 188

[Close]

BLAST of CsaV3_4G008580 vs. TrEMBL
Match: tr|A0A2I4GN81|A0A2I4GN81_9ROSI (pleiotropic drug resistance protein 3-like OS=Juglans regia OX=51240 GN=LOC109009355 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 4   LASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           LASIF++N ASFT ASMP WL+WGF VSPI+YGEIGLSLNEFLAPRWQ
Sbjct: 416 LASIFRTNNASFTAASMPVWLRWGFWVSPITYGEIGLSLNEFLAPRWQ 463

[Close]

BLAST of CsaV3_4G008580 vs. TrEMBL
Match: tr|A0A2N9H4C9|A0A2N9H4C9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34570 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.9e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 4   LASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           LAS+FQ+N +S T ASMP WLKWGF VSP++YGEIGLSLNEFLAPRWQ
Sbjct: 445 LASVFQTNTSSMTAASMPVWLKWGFWVSPLTYGEIGLSLNEFLAPRWQ 492

[Close]

BLAST of CsaV3_4G008580 vs. TrEMBL
Match: tr|A0A2N9G6D3|A0A2N9G6D3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26098 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.9e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 4   LASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           LAS+FQ+N +S T ASMP WLKWGF VSP++YGEIGLSLNEFLAPRWQ
Sbjct: 769 LASVFQTNTSSMTAASMPVWLKWGFWVSPLTYGEIGLSLNEFLAPRWQ 816

[Close]

BLAST of CsaV3_4G008580 vs. TrEMBL
Match: tr|A0A2N9HR14|A0A2N9HR14_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42006 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.9e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 4   LASIFQSNGASFTVASMPAWLKWGFRVSPISYGEIGLSLNEFLAPRWQ 52
           LAS+FQ+N +S T ASMP WLKWGF VSP++YGEIGLSLNEFLAPRWQ
Sbjct: 173 LASVFQTNTSSMTAASMPVWLKWGFWVSPLTYGEIGLSLNEFLAPRWQ 220

The following BLAST results are available for this feature:

BLAST of CsaV3_4G008580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018845350.1	1.8e-15	83.33	PREDICTED: pleiotropic drug resistance protein 3-like [Juglans regia]	[more]
XP_018814339.1	1.8e-15	83.33	PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Juglans regia]	[more]
XP_011652141.1	4.5e-14	66.67	PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] >KGN5936...	[more]
XP_008443150.1	1.9e-12	62.12	PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo]	[more]
XP_008443151.1	1.9e-12	62.12	PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo]	[more]

BLAST of CsaV3_4G008580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37280.1	1.8e-12	51.52	pleiotropic drug resistance 5	[more]
AT3G53480.1	1.8e-12	53.85	pleiotropic drug resistance 9	[more]
AT4G15233.2	3.7e-10	71.88	ABC-2 and Plant PDR ABC-type transporter family protein	[more]
AT4G15230.1	6.3e-10	69.70	pleiotropic drug resistance 2	[more]
AT4G15215.1	1.4e-09	64.71	pleiotropic drug resistance 13	[more]

BLAST of CsaV3_4G008580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUT8\|AB33G_ARATH	3.2e-11	51.52	ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=...	[more]
sp\|Q9LFH0\|AB37G_ARATH	3.2e-11	53.85	ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=...	[more]
sp\|Q5W274\|PDR3_TOBAC	4.2e-11	78.79	Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 ...	[more]
sp\|Q8GU83\|AB41G_ORYSJ	2.3e-09	78.13	ABC transporter G family member 41 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]
sp\|Q2QV81\|AB49G_ORYSJ	3.0e-09	60.42	ABC transporter G family member 49 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]

BLAST of CsaV3_4G008580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4E4L5\|A0A2I4E4L5_9ROSI	1.2e-15	83.33	pleiotropic drug resistance protein 3-like isoform X1 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2I4GN81\|A0A2I4GN81_9ROSI	1.2e-15	83.33	pleiotropic drug resistance protein 3-like OS=Juglans regia OX=51240 GN=LOC10900...	[more]
tr\|A0A2N9H4C9\|A0A2N9H4C9_FAGSY	7.9e-15	79.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34570 PE=3 SV=1	[more]
tr\|A0A2N9G6D3\|A0A2N9G6D3_FAGSY	7.9e-15	79.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26098 PE=3 SV=1	[more]
tr\|A0A2N9HR14\|A0A2N9HR14_FAGSY	7.9e-15	79.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42006 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G008580.1	CsaV3_4G008580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19241:SF259	ABC TRANSPORTER G FAMILY MEMBER 33-RELATED	coord: 17..49
None	No IPR available	PANTHER	PTHR19241	ATP-BINDING CASSETTE TRANSPORTER	coord: 17..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G008580	CsGy4G008230	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G008580	Wax gourd	cucwgoB370
CsaV3_4G008580	Wax gourd	cucwgoB385
CsaV3_4G008580	Silver-seed gourd	carcucB1034
CsaV3_4G008580	Cucumber (Gy14) v1	cgycucB418
CsaV3_4G008580	Cucurbita maxima (Rimu)	cmacucB0395
CsaV3_4G008580	Cucurbita maxima (Rimu)	cmacucB0493
CsaV3_4G008580	Cucurbita moschata (Rifu)	cmocucB0392
CsaV3_4G008580	Cucurbita moschata (Rifu)	cmocucB0482
CsaV3_4G008580	Cucurbita pepo (Zucchini)	cpecucB0271
CsaV3_4G008580	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G008580	Bottle gourd (USVL1VR-Ls)	cuclsiB324
CsaV3_4G008580	Melon (DHL92) v3.5.1	cucmeB317
CsaV3_4G008580	Melon (DHL92) v3.5.1	cucmeB323
CsaV3_4G008580	Melon (DHL92) v3.6.1	cucmedB296
CsaV3_4G008580	Melon (DHL92) v3.6.1	cucmedB309
CsaV3_4G008580	Melon (DHL92) v3.6.1	cucmedB316
CsaV3_4G008580	Watermelon (Charleston Gray)	cucwcgB343
CsaV3_4G008580	Watermelon (97103) v1	cucwmB326
CsaV3_4G008580	Watermelon (97103) v2	cucwmbB329