CsaV3_4G008390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G008390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 5876039 .. 5876516 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATACAAATGAGAAGAGGCCAATGCCTAACAATGGTAGAATAAGTAATAACTACATTGGGGTTACAGATCATGAGCAAAAAAATCAGAGAGCAAGTATCAACATCAACCGAATGGACTGAAAAAAGATATTATGTCATTTTGGGGTTTCTATTGGAGAGGCAAGAGGGAAGTATGAGCGGAGAAGGGACTAGAACAAGGGAAAAAATGACAAAACCCTAAAGCCCAAAGAAATTGAACATGCAAGAGGGTGAAGGGAGTACGAAACTGTGGGACAATGAGGGAGAGGGAGACAAAGAGTTTTGGAGAAGGGAGACGGCACAGAAAGGAGTAGGTGAGGGAGATAGGAGGGATTCGGAGAAGGGAAAACGAGAGGAGAGGGAAGGATAATAGCTTGGGAGAATGGGAGTAGTGAACATTGCGAGGAGGGAGAGAGTGGACATAAACAGTGCAAGGGGGATTTGGGAGAGGAGTGATAAG

mRNA sequence

ATGCAAGAGGGTGAAGGGAGTACGAAACTGTGGGACAATGAGGGAGAGGGAGACAAAGAGTTTTGGAGAAGGGAGACGGCACAGAAAGGAGTAGGTGAGGGAGATAGGAGGGATTCGGAGAAGGGAAAACGAGAGGAGAGGGAAGGATAA

Coding sequence (CDS)

ATGCAAGAGGGTGAAGGGAGTACGAAACTGTGGGACAATGAGGGAGAGGGAGACAAAGAGTTTTGGAGAAGGGAGACGGCACAGAAAGGAGTAGGTGAGGGAGATAGGAGGGATTCGGAGAAGGGAAAACGAGAGGAGAGGGAAGGATAA

Protein sequence

MQEGEGSTKLWDNEGEGDKEFWRRETAQKGVGEGDRRDSEKGKREEREG
Homology
[Close]
BLAST of CsaV3_4G008390 vs. NCBI nr
Match: KGN53598.1 (hypothetical protein Csa_4G088710 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQEGEGSTKLWDNEGEGDKEFWRRETAQKGVGEGDRRDSEKGKREEREG 50
          MQEGEGSTKLWDNEGEGDKEFWRRETAQKGVGEGDRRDSEKGKREEREG
Sbjct: 1  MQEGEGSTKLWDNEGEGDKEFWRRETAQKGVGEGDRRDSEKGKREEREG 49

[Close]
BLAST of CsaV3_4G008390 vs. TrEMBL
Match: tr|A0A0A0KVL8|A0A0A0KVL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G088710 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.4e-18
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQEGEGSTKLWDNEGEGDKEFWRRETAQKGVGEGDRRDSEKGKREEREG 50
          MQEGEGSTKLWDNEGEGDKEFWRRETAQKGVGEGDRRDSEKGKREEREG
Sbjct: 1  MQEGEGSTKLWDNEGEGDKEFWRRETAQKGVGEGDRRDSEKGKREEREG 49

The following BLAST results are available for this feature:
BLAST of CsaV3_4G008390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53598.11.4e-17100.00hypothetical protein Csa_4G088710 [Cucumis sativus][more]
BLAST of CsaV3_4G008390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G008390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G008390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVL8|A0A0A0KVL8_CUCSA9.4e-18100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G088710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G008390.1CsaV3_4G008390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G008390Watermelon (97103) v2cucwmbB284
CsaV3_4G008390Watermelon (97103) v2cucwmbB329
CsaV3_4G008390Wax gourdcucwgoB370
CsaV3_4G008390Wax gourdcucwgoB385
CsaV3_4G008390Wax gourdcucwgoB430
CsaV3_4G008390Cucumber (Chinese Long) v3cuccucB164
CsaV3_4G008390Silver-seed gourdcarcucB0050
CsaV3_4G008390Silver-seed gourdcarcucB0345
CsaV3_4G008390Silver-seed gourdcarcucB0689
CsaV3_4G008390Cucumber (Gy14) v2cgybcucB171
CsaV3_4G008390Cucumber (Gy14) v2cgybcucB173
CsaV3_4G008390Cucumber (Gy14) v1cgycucB418
CsaV3_4G008390Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G008390Cucurbita maxima (Rimu)cmacucB0572
CsaV3_4G008390Cucurbita maxima (Rimu)cmacucB0849
CsaV3_4G008390Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G008390Cucurbita moschata (Rifu)cmocucB0559
CsaV3_4G008390Cucurbita moschata (Rifu)cmocucB0834
CsaV3_4G008390Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G008390Cucurbita pepo (Zucchini)cpecucB0506
CsaV3_4G008390Cucurbita pepo (Zucchini)cpecucB0707
CsaV3_4G008390Wild cucumber (PI 183967)cpicucB213
CsaV3_4G008390Wild cucumber (PI 183967)cpicucB220
CsaV3_4G008390Bottle gourd (USVL1VR-Ls)cuclsiB310
CsaV3_4G008390Bottle gourd (USVL1VR-Ls)cuclsiB324
CsaV3_4G008390Melon (DHL92) v3.5.1cucmeB313
CsaV3_4G008390Melon (DHL92) v3.5.1cucmeB317
CsaV3_4G008390Melon (DHL92) v3.6.1cucmedB305
CsaV3_4G008390Melon (DHL92) v3.6.1cucmedB309
CsaV3_4G008390Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G008390Watermelon (97103) v1cucwmB326