CsaV3_4G008330 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G008330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMyosin-4 like
Locationchr4 : 5840050 .. 5841161 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCCTATTCATGTGGCTTCATTATCAGAAATTGGTTGCAATGAATTTGGGAGCAATATGTTGCCAAATAAAGCTTTTTCTGTCTATTATGCTGCACTTCATAATGATGAGAATGATATAATCAAAGGGAATTATGATTGGATTAGTTCTCACATTGACTCAGATGGAAACTACTCTTCTAATTTTGTCTCATCAATCGACTCGTTTGGTTCGTGTTCTTCTTTCCTTCTCCTAACATCTTCTTTTTCATTCAGCTGTATTGGTTCATCACTCTAAAGTTTTGCCACTGATTTCTTGGTTGTATTGACTGACTTTTAATTTGTAGGGTCATTGGAAGACTACGAATCTACTGACTTCAACAAGGAAGCAAACGATTTGTCTCATCAAGTGGAGCTTGAAGATAACTGTGTCATCGTGGATTATCATGATGATGTCTCTAGTGAACCCCCAAACCAACCTTCATTTAAGGTATTTTGTTTCCCATATAAATTCCTTATGATGTTCTTGGAGATTATTTAAAATCACCTATGATTCACATAATCACAGAAGCTACAACTCTTGTTATTGCTTTTTGTCTTTTCTAACTCTTAAATTCAACAATGGTAGTGTAATAAACCAAATCATCTACTTCTGGGATTAATATTATAAAAAAGGCCCAAGTATAGATATGGAAACCTACAAGGATGCATTTATTTAAATATATATTTATTCTTAAGCAAAATGAATTATTTTCATATTCTTACTTTGAAATTTTGGCCATGGCTCATGTGCTTTTGGATGTTTATTAATGTCGAAATTTATATTTGAATGACTTTTGGTCAGAAGCATATACCATATAGTTGTTTTACATTAAGATAATAAAACACTATTAACATCTGTTTTTACATGTTTTTTTCCTTCTTATAATTATGATGCAGAGAACAATATCGAATGCTTTCTTTTCCATAAAGAGGTTGGCAATGGAGTACAAACAGCTAGCTATTTTGAAAGGATATGATGCAACAAAGAGCTGCCAAGGAACAAGTTTGGCTGCTCCACATACAATGCTTTTGAGGGATTCTGATCAAACAATTCAATCAAGTGACTCTGAATGGGAGCTTCTTTGA

mRNA sequence

ATGGAAGATCCTATTCATGTGGCTTCATTATCAGAAATTGGTTGCAATGAATTTGGGAGCAATATGTTGCCAAATAAAGCTTTTTCTGTCTATTATGCTGCACTTCATAATGATGAGAATGATATAATCAAAGGGAATTATGATTGGATTAGTTCTCACATTGACTCAGATGGAAACTACTCTTCTAATTTTGTCTCATCAATCGACTCGTTTGGGTCATTGGAAGACTACGAATCTACTGACTTCAACAAGGAAGCAAACGATTTGTCTCATCAAGTGGAGCTTGAAGATAACTGTGTCATCGTGGATTATCATGATGATGTCTCTAGTGAACCCCCAAACCAACCTTCATTTAAGAGAACAATATCGAATGCTTTCTTTTCCATAAAGAGGTTGGCAATGGAGTACAAACAGCTAGCTATTTTGAAAGGATATGATGCAACAAAGAGCTGCCAAGGAACAAGTTTGGCTGCTCCACATACAATGCTTTTGAGGGATTCTGATCAAACAATTCAATCAAGTGACTCTGAATGGGAGCTTCTTTGA

Coding sequence (CDS)

ATGGAAGATCCTATTCATGTGGCTTCATTATCAGAAATTGGTTGCAATGAATTTGGGAGCAATATGTTGCCAAATAAAGCTTTTTCTGTCTATTATGCTGCACTTCATAATGATGAGAATGATATAATCAAAGGGAATTATGATTGGATTAGTTCTCACATTGACTCAGATGGAAACTACTCTTCTAATTTTGTCTCATCAATCGACTCGTTTGGGTCATTGGAAGACTACGAATCTACTGACTTCAACAAGGAAGCAAACGATTTGTCTCATCAAGTGGAGCTTGAAGATAACTGTGTCATCGTGGATTATCATGATGATGTCTCTAGTGAACCCCCAAACCAACCTTCATTTAAGAGAACAATATCGAATGCTTTCTTTTCCATAAAGAGGTTGGCAATGGAGTACAAACAGCTAGCTATTTTGAAAGGATATGATGCAACAAAGAGCTGCCAAGGAACAAGTTTGGCTGCTCCACATACAATGCTTTTGAGGGATTCTGATCAAACAATTCAATCAAGTGACTCTGAATGGGAGCTTCTTTGA

Protein sequence

MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNYSSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWELL
BLAST of CsaV3_4G008330 vs. NCBI nr
Match: XP_011654345.1 (PREDICTED: uncharacterized protein LOC105435348 [Cucumis sativus] >KGN53593.1 hypothetical protein Csa_4G083670 [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 1.0e-97
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0

Query: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60
           MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY
Sbjct: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60

Query: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR 120
           SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR
Sbjct: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR 120

Query: 121 TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL 180
           TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL
Sbjct: 121 TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL 180

Query: 181 L 182
           L
Sbjct: 181 L 181

BLAST of CsaV3_4G008330 vs. NCBI nr
Match: XP_021595871.1 (uncharacterized protein LOC110602615 isoform X1 [Manihot esculenta] >OAY28751.1 hypothetical protein MANES_15G092100 [Manihot esculenta] >OAY28752.1 hypothetical protein MANES_15G092100 [Manihot esculenta])

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 57/156 (36.54%), Postives = 78/156 (50.00%), Query Frame = 0

Query: 34  ALHNDENDIIKGNYDWISSHIDSDG--NYSSNFVSSIDSFGSLEDYESTDFNKEANDLSH 93
           A+H   N ++          ++S G  NYSSNF  +I           TDF  E  D++ 
Sbjct: 400 AVHTCSNSVLS---------LESTGCSNYSSNFGDTI-----------TDFGMENIDMAD 459

Query: 94  QVELEDNCVIVDYH--DDVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILKGYDATK 153
           +V+LED+CVIVD     +VS       S+K+ + +AF S KRL+ EY+QLAI  G    +
Sbjct: 460 KVKLEDSCVIVDNRMLYEVSRRIRKLRSYKKKVQDAFTSNKRLSKEYEQLAIWYGDLDME 519

Query: 154 SCQGTSLAA---PHTMLLRDSDQTI-QSSDSEWELL 182
             Q T+L         +  D D  I Q  DSEWELL
Sbjct: 520 GSQDTTLQGQLQSSNSVTFDPDYRIHQIHDSEWELL 535

BLAST of CsaV3_4G008330 vs. NCBI nr
Match: XP_009335193.1 (PREDICTED: uncharacterized protein LOC103927937 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 0

Query: 70  SFGSLEDYESTDFNK---EANDLSHQVELEDNCVIVD--YHDDVSSEPPNQPSFKRTISN 129
           +FGS  D  S+DF++   E  DL  +V+LE++CVIVD      VSS    Q S+K+ I +
Sbjct: 439 AFGS-SDESSSDFSRSSMETIDLHDKVKLEESCVIVDDSVLHAVSSRARKQRSYKKRIQD 498

Query: 130 AFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWELL 182
           AF S KRLA EY+QLAI  G    ++ Q        T+    S +T  + DSEWELL
Sbjct: 499 AFTSKKRLAKEYEQLAIWFGDSHIETSQ-------QTLSNVKSLETDDACDSEWELL 547

BLAST of CsaV3_4G008330 vs. NCBI nr
Match: XP_021687983.1 (uncharacterized protein LOC110670300 isoform X1 [Hevea brasiliensis] >XP_021687984.1 uncharacterized protein LOC110670300 isoform X1 [Hevea brasiliensis])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 0

Query: 73  SLEDYESTDFNKEANDLSHQVELEDNCVIVDYH--DDVSSEPPNQPSFKRTISNAFFSIK 132
           S+   ESTDF  E  D+S +V+LED+CVIVD     +VS       S+K+ I +AF S K
Sbjct: 405 SVLSLESTDFGMETIDVSDKVKLEDSCVIVDNSMLYEVSRRTHKLRSYKKKIQDAFTSKK 464

Query: 133 RLAMEYKQLAILKG---YDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWELL 182
           +L+ EY+QLAI  G    + +       L +  T+ L    +     DSEWELL
Sbjct: 465 KLSKEYEQLAIWYGDLDIEGSHDTLQGQLQSGTTVTLDSDFRMHHMHDSEWELL 518

BLAST of CsaV3_4G008330 vs. NCBI nr
Match: XP_021687987.1 (uncharacterized protein LOC110670300 isoform X3 [Hevea brasiliensis])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 0

Query: 73  SLEDYESTDFNKEANDLSHQVELEDNCVIVDYH--DDVSSEPPNQPSFKRTISNAFFSIK 132
           S+   ESTDF  E  D+S +V+LED+CVIVD     +VS       S+K+ I +AF S K
Sbjct: 385 SVLSLESTDFGMETIDVSDKVKLEDSCVIVDNSMLYEVSRRTHKLRSYKKKIQDAFTSKK 444

Query: 133 RLAMEYKQLAILKG---YDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWELL 182
           +L+ EY+QLAI  G    + +       L +  T+ L    +     DSEWELL
Sbjct: 445 KLSKEYEQLAIWYGDLDIEGSHDTLQGQLQSGTTVTLDSDFRMHHMHDSEWELL 498

BLAST of CsaV3_4G008330 vs. TrEMBL
Match: tr|A0A0A0KVL5|A0A0A0KVL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083670 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 6.7e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0

Query: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60
           MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY
Sbjct: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60

Query: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR 120
           SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR
Sbjct: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR 120

Query: 121 TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL 180
           TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL
Sbjct: 121 TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL 180

Query: 181 L 182
           L
Sbjct: 181 L 181

BLAST of CsaV3_4G008330 vs. TrEMBL
Match: tr|A0A251J521|A0A251J521_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G092100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-07
Identity = 57/156 (36.54%), Postives = 78/156 (50.00%), Query Frame = 0

Query: 34  ALHNDENDIIKGNYDWISSHIDSDG--NYSSNFVSSIDSFGSLEDYESTDFNKEANDLSH 93
           A+H   N ++          ++S G  NYSSNF  +I           TDF  E  D++ 
Sbjct: 400 AVHTCSNSVLS---------LESTGCSNYSSNFGDTI-----------TDFGMENIDMAD 459

Query: 94  QVELEDNCVIVDYH--DDVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILKGYDATK 153
           +V+LED+CVIVD     +VS       S+K+ + +AF S KRL+ EY+QLAI  G    +
Sbjct: 460 KVKLEDSCVIVDNRMLYEVSRRIRKLRSYKKKVQDAFTSNKRLSKEYEQLAIWYGDLDME 519

Query: 154 SCQGTSLAA---PHTMLLRDSDQTI-QSSDSEWELL 182
             Q T+L         +  D D  I Q  DSEWELL
Sbjct: 520 GSQDTTLQGQLQSSNSVTFDPDYRIHQIHDSEWELL 535

BLAST of CsaV3_4G008330 vs. TrEMBL
Match: tr|B9GGV2|B9GGV2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G376800v3 PE=4 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = 0

Query: 58  GNYSSNFVSSIDSFGSLED---YESTDFNKEANDLSHQVELEDNCVIVD--YHDDVSSEP 117
           G  SSN V S+ S G  +D    + T+   E  DLS  V+L+++CVIVD  +  +VS   
Sbjct: 343 GLASSNSVLSLVSIGCSDDSAIEDLTESEMENIDLSENVKLDESCVIVDNSFLYEVSRRN 402

Query: 118 PNQPSFKRTISNAFFSIKRLAMEYKQLAI----LKGYDATKSCQGTSLAAPHTMLLRDSD 177
               S+K+ I +AF S KRL  EY+QLAI    L G+D  +      L++  T+ L    
Sbjct: 403 RRLRSYKKKIQDAFSSKKRLTKEYEQLAIWFGDLDGHDTMQH----ELSSSTTITL--DP 462

Query: 178 QTIQSSDSEWELL 182
           QT    DSEWELL
Sbjct: 463 QTNWRQDSEWELL 469

BLAST of CsaV3_4G008330 vs. TrEMBL
Match: tr|A0A1S3CKE3|A0A1S3CKE3_CUCME (uncharacterized protein LOC103501804 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501804 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-05
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 0

Query: 56   SDGNYSSN--FVSSIDSFGSLED----YESTDF----NKEANDLSHQVELEDNCVIVDYH 115
            S GN +SN   VSS  S  S+E     ++S+D+      E  DL H+V  E+ C ++DY 
Sbjct: 894  SYGNNASNMKLVSSKSSLSSMESLGCPHDSSDYILDAEMETVDLGHKVTHENECDVLDYK 953

Query: 116  --DDVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTML 175
                VS       S+K+ I +AF S KRLA EY+QLAI  G    +    +S       L
Sbjct: 954  ALHAVSRRTQKLRSYKKRIQDAFTSKKRLAKEYEQLAIWYGDTDMEFSTNSS-----QKL 1013

Query: 176  LRDSDQTIQSSDSEWELL 182
             +++  T   SDSEWELL
Sbjct: 1014 EKENTSTNYLSDSEWELL 1026

BLAST of CsaV3_4G008330 vs. TrEMBL
Match: tr|A0A068VCE9|A0A068VCE9_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00009712001 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 42/116 (36.21%), Postives = 58/116 (50.00%), Query Frame = 0

Query: 69  DSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYH--DDVSSEPPNQPSFKRTISNAF 128
           DS   ++D E      E  DLS +V++ED+CV++D      VS  P    SFK+ I  AF
Sbjct: 714 DSVNDIDDAE-----METIDLSDEVKVEDSCVVMDNEILHAVSCRPRKFRSFKKLIQEAF 773

Query: 129 FSIKRLAMEYKQLAILKG-YDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWELL 182
            S +RL  EY+QL+I  G  +A  S       +P+        Q     +SEWELL
Sbjct: 774 ASRRRLIKEYEQLSIQFGDIEADTSFHSEQFLSPYMPSASRPSQAHDLGESEWELL 824

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011654345.11.0e-97100.00PREDICTED: uncharacterized protein LOC105435348 [Cucumis sativus] >KGN53593.1 hy... [more]
XP_021595871.14.9e-0736.54uncharacterized protein LOC110602615 isoform X1 [Manihot esculenta] >OAY28751.1 ... [more]
XP_009335193.11.4e-0642.74PREDICTED: uncharacterized protein LOC103927937 isoform X1 [Pyrus x bretschneide... [more]
XP_021687983.11.4e-0639.47uncharacterized protein LOC110670300 isoform X1 [Hevea brasiliensis] >XP_0216879... [more]
XP_021687987.11.4e-0639.47uncharacterized protein LOC110670300 isoform X3 [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KVL5|A0A0A0KVL5_CUCSA6.7e-98100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083670 PE=4 SV=1[more]
tr|A0A251J521|A0A251J521_MANES3.2e-0736.54Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G092100 PE=4 SV=... [more]
tr|B9GGV2|B9GGV2_POPTR3.6e-0639.85Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G376800v3 PE=... [more]
tr|A0A1S3CKE3|A0A1S3CKE3_CUCME1.8e-0537.68uncharacterized protein LOC103501804 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A068VCE9|A0A068VCE9_COFCA3.9e-0536.21Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00009712001 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G008330.1CsaV3_4G008330.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34659FAMILY NOT NAMEDcoord: 74..181

The following gene(s) are paralogous to this gene:

None