CsaV3_4G008180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G008180
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 5737920 .. 5738159 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATACGGCTATTGAAAAAATTGGTATTTTGAAGACACCACCTGTAAAACCAGTCGAACTATCCTTATGTTCTTCTGCTCTTCTCGAGGAGATTCGTCGAGCCAAGATGAAAGTGGATGGCAAAGACATCGAGAACCCTCTCTCCAAAGGAGGTGTCTGTCCTACAGTGCCTTCGACGAAGGTTACATCCATGCATGCTCTCTCTCAAGATTTTCGAGCCACCTCTATGAAATAG

mRNA sequence

ATGGTTGATACGGCTATTGAAAAAATTGGTATTTTGAAGACACCACCTGTAAAACCAGTCGAACTATCCTTATGTTCTTCTGCTCTTCTCGAGGAGATTCGTCGAGCCAAGATGAAAGTGGATGGCAAAGACATCGAGAACCCTCTCTCCAAAGGAGGTGTCTGTCCTACAGTGCCTTCGACGAAGGTTACATCCATGCATGCTCTCTCTCAAGATTTTCGAGCCACCTCTATGAAATAG

Coding sequence (CDS)

ATGGTTGATACGGCTATTGAAAAAATTGGTATTTTGAAGACACCACCTGTAAAACCAGTCGAACTATCCTTATGTTCTTCTGCTCTTCTCGAGGAGATTCGTCGAGCCAAGATGAAAGTGGATGGCAAAGACATCGAGAACCCTCTCTCCAAAGGAGGTGTCTGTCCTACAGTGCCTTCGACGAAGGTTACATCCATGCATGCTCTCTCTCAAGATTTTCGAGCCACCTCTATGAAATAG

Protein sequence

MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPSTKVTSMHALSQDFRATSMK
Homology
[Close]
BLAST of CsaV3_4G008180 vs. NCBI nr
Match: KGN53577.1 (hypothetical protein Csa_4G083520 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
          MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS
Sbjct: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60

Query: 61 TKVTSMHALSQDFRATSMK 80
          TKVTSMHALSQDFRATSMK
Sbjct: 61 TKVTSMHALSQDFRATSMK 79

[Close]
BLAST of CsaV3_4G008180 vs. NCBI nr
Match: KGN54752.1 (hypothetical protein Csa_4G444640 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
          M DT IE++ ILKTP  K VE+SL  SALLEEIR+ KMKV GKDI+NP S+GGVCP VPS
Sbjct: 14 MADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPS 73

Query: 61 TKVTSMHALSQDFR---ATSMK 80
          TK TSMH   + +     TSMK
Sbjct: 74 TKATSMHTPLKIYEPPLGTSMK 95

[Close]
BLAST of CsaV3_4G008180 vs. NCBI nr
Match: ADN34118.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-11
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 1   MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
           +VD+A E++G  KTP  KP E SLC SAL EEIRR KM V GKD+E+  SK GVCP    
Sbjct: 402 VVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKAFL 461

Query: 61  TKVTSMHA 69
            KV+S HA
Sbjct: 462 PKVSSTHA 469

[Close]
BLAST of CsaV3_4G008180 vs. NCBI nr
Match: KGN50797.1 (hypothetical protein Csa_5G264300 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-11
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 13  KTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPSTKVTSMHA---L 72
           KTP  KPV++SL  SALLEEIRR KMKV GKDIEN  S+GG  P V S K TSMHA   +
Sbjct: 33  KTPAAKPVKVSLRPSALLEEIRRGKMKVGGKDIENLPSRGGAYPIVSSMKATSMHAPLKI 92

Query: 73  SQDFRATSMK 80
           S+    TSMK
Sbjct: 93  SEPPLGTSMK 102

[Close]
BLAST of CsaV3_4G008180 vs. NCBI nr
Match: KGN65353.1 (hypothetical protein Csa_1G368490 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSK 52
          M DTAIE++GILKTP  KPVE+SL  SALLEEIR  KMKV GKDI+NP S+
Sbjct: 1  MADTAIEEVGILKTPATKPVEVSLHPSALLEEIRLGKMKVGGKDIKNPPSR 51

[Close]
BLAST of CsaV3_4G008180 vs. TrEMBL
Match: tr|A0A0A0KYX3|A0A0A0KYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083520 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
          MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS
Sbjct: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60

Query: 61 TKVTSMHALSQDFRATSMK 80
          TKVTSMHALSQDFRATSMK
Sbjct: 61 TKVTSMHALSQDFRATSMK 79

[Close]
BLAST of CsaV3_4G008180 vs. TrEMBL
Match: tr|A0A0A0L2B5|A0A0A0L2B5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G444640 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-17
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
          M DT IE++ ILKTP  K VE+SL  SALLEEIR+ KMKV GKDI+NP S+GGVCP VPS
Sbjct: 14 MADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPS 73

Query: 61 TKVTSMHALSQDFR---ATSMK 80
          TK TSMH   + +     TSMK
Sbjct: 74 TKATSMHTPLKIYEPPLGTSMK 95

[Close]
BLAST of CsaV3_4G008180 vs. TrEMBL
Match: tr|E5GCB9|E5GCB9_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 1   MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
           +VD+A E++G  KTP  KP E SLC SAL EEIRR KM V GKD+E+  SK GVCP    
Sbjct: 402 VVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKAFL 461

Query: 61  TKVTSMHA 69
            KV+S HA
Sbjct: 462 PKVSSTHA 469

[Close]
BLAST of CsaV3_4G008180 vs. TrEMBL
Match: tr|A0A0A0KQU9|A0A0A0KQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 13  KTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPSTKVTSMHA---L 72
           KTP  KPV++SL  SALLEEIRR KMKV GKDIEN  S+GG  P V S K TSMHA   +
Sbjct: 33  KTPAAKPVKVSLRPSALLEEIRRGKMKVGGKDIENLPSRGGAYPIVSSMKATSMHAPLKI 92

Query: 73  SQDFRATSMK 80
           S+    TSMK
Sbjct: 93  SEPPLGTSMK 102

[Close]
BLAST of CsaV3_4G008180 vs. TrEMBL
Match: tr|A0A0A0LU69|A0A0A0LU69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G368490 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSK 52
          M DTAIE++GILKTP  KPVE+SL  SALLEEIR  KMKV GKDI+NP S+
Sbjct: 1  MADTAIEEVGILKTPATKPVEVSLHPSALLEEIRLGKMKVGGKDIKNPPSR 51

The following BLAST results are available for this feature:
BLAST of CsaV3_4G008180 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53577.13.2e-35100.00hypothetical protein Csa_4G083520 [Cucumis sativus][more]
KGN54752.15.1e-1763.41hypothetical protein Csa_4G444640 [Cucumis sativus][more]
ADN34118.12.4e-1158.82hypothetical protein [Cucumis melo subsp. melo][more]
KGN50797.14.2e-1162.86hypothetical protein Csa_5G264300 [Cucumis sativus][more]
KGN65353.16.0e-1072.55hypothetical protein Csa_1G368490 [Cucumis sativus][more]
BLAST of CsaV3_4G008180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G008180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G008180 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYX3|A0A0A0KYX3_CUCSA2.1e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083520 PE=4 SV=1[more]
tr|A0A0A0L2B5|A0A0A0L2B5_CUCSA3.4e-1763.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G444640 PE=4 SV=1[more]
tr|E5GCB9|E5GCB9_CUCME1.6e-1158.82Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A0A0KQU9|A0A0A0KQU9_CUCSA2.8e-1162.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1[more]
tr|A0A0A0LU69|A0A0A0LU69_CUCSA4.0e-1072.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G368490 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G008180.1CsaV3_4G008180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G008180Silver-seed gourdcarcucB0050
CsaV3_4G008180Silver-seed gourdcarcucB0051
CsaV3_4G008180Silver-seed gourdcarcucB0052
CsaV3_4G008180Silver-seed gourdcarcucB0345
CsaV3_4G008180Silver-seed gourdcarcucB0689
CsaV3_4G008180Cucumber (Gy14) v2cgybcucB171
CsaV3_4G008180Cucumber (Gy14) v2cgybcucB173
CsaV3_4G008180Cucumber (Gy14) v1cgycucB418
CsaV3_4G008180Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G008180Cucurbita maxima (Rimu)cmacucB0572
CsaV3_4G008180Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G008180Cucurbita maxima (Rimu)cmacucB0849
CsaV3_4G008180Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G008180Cucurbita moschata (Rifu)cmocucB0559
CsaV3_4G008180Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G008180Cucurbita moschata (Rifu)cmocucB0834
CsaV3_4G008180Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G008180Cucurbita pepo (Zucchini)cpecucB0496
CsaV3_4G008180Cucurbita pepo (Zucchini)cpecucB0506
CsaV3_4G008180Cucurbita pepo (Zucchini)cpecucB0707
CsaV3_4G008180Wild cucumber (PI 183967)cpicucB213
CsaV3_4G008180Wild cucumber (PI 183967)cpicucB220
CsaV3_4G008180Bottle gourd (USVL1VR-Ls)cuclsiB310
CsaV3_4G008180Bottle gourd (USVL1VR-Ls)cuclsiB324
CsaV3_4G008180Melon (DHL92) v3.5.1cucmeB313
CsaV3_4G008180Melon (DHL92) v3.5.1cucmeB317
CsaV3_4G008180Melon (DHL92) v3.6.1cucmedB305
CsaV3_4G008180Melon (DHL92) v3.6.1cucmedB309
CsaV3_4G008180Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G008180Watermelon (97103) v1cucwmB326
CsaV3_4G008180Watermelon (97103) v2cucwmbB284
CsaV3_4G008180Watermelon (97103) v2cucwmbB329
CsaV3_4G008180Wax gourdcucwgoB370
CsaV3_4G008180Wax gourdcucwgoB430
CsaV3_4G008180Cucumber (Chinese Long) v3cuccucB164