CsaV3_4G007950 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G007950
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 5567348 .. 5567683 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCTTCAATGCTTCACAGAACCTCTGGATTTTGGAAACTTATTGGCTCTCTTAGATATTGAGGGTGTTGATGGTTATCCTGTTATGTAGCAGTGATGGTTTTCAATAGAAGGGATCTCAGAGGAAGTAATGGAGTTTCTCTTTCTTTTCTTAGGCAAAGAGGTGCTGAAGAAATATGCTGGTCCAGCCAAACTGGTTGTTATTCTTTTATTTTCTTTATATGTTTTTTGGTGCTTGGTGGATGGGACCGTGGTGGTGGAGTTAAGTATTGAGGCTTCTGTGAAAAAGTATATGAAGAGCTGTGGTGGCTCTGGTGATCTTGAGATCTAA

mRNA sequence

ATGGTGAAGCTTCAATGCTTCACAGAACCTCTGGATTTTGGAAACTTATTGGCTCTCTTAGATATTGAGGGTGTTGATGGCAAAGAGGTGCTGAAGAAATATGCTGGTCCAGCCAAACTGGTTGTTATTCTTTTATTTTCTTTATATGTTTTTTGGTGCTTGGTGGATGGGACCGTGGTGGTGGAGTTAAGTATTGAGGCTTCTGTGAAAAAGTATATGAAGAGCTGTGGTGGCTCTGGTGATCTTGAGATCTAA

Coding sequence (CDS)

ATGGTGAAGCTTCAATGCTTCACAGAACCTCTGGATTTTGGAAACTTATTGGCTCTCTTAGATATTGAGGGTGTTGATGGCAAAGAGGTGCTGAAGAAATATGCTGGTCCAGCCAAACTGGTTGTTATTCTTTTATTTTCTTTATATGTTTTTTGGTGCTTGGTGGATGGGACCGTGGTGGTGGAGTTAAGTATTGAGGCTTCTGTGAAAAAGTATATGAAGAGCTGTGGTGGCTCTGGTGATCTTGAGATCTAA

Protein sequence

MVKLQCFTEPLDFGNLLALLDIEGVDGKEVLKKYAGPAKLVVILLFSLYVFWCLVDGTVVVELSIEASVKKYMKSCGGSGDLEI
Homology
[Close]
BLAST of CsaV3_4G007950 vs. NCBI nr
Match: KGN53552.1 (hypothetical protein Csa_4G081300 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MVKLQCFTEPLDFGNLLALLDIEGVDGKEVLKKYAGPAKLVVILLFSLYVFWCLVDGTVV 60
          MVKLQCFTEPLDFGNLLALLDIEGVDGKEVLKKYAGPAKLVVILLFSLYVFWCLVDGTVV
Sbjct: 1  MVKLQCFTEPLDFGNLLALLDIEGVDGKEVLKKYAGPAKLVVILLFSLYVFWCLVDGTVV 60

Query: 61 VELSIEASVKKYMKSCGGSGDLEI 85
          VELSIEASVKKYMKSCGGSGDLEI
Sbjct: 61 VELSIEASVKKYMKSCGGSGDLEI 84

[Close]
BLAST of CsaV3_4G007950 vs. TrEMBL
Match: tr|A0A0A0KYV6|A0A0A0KYV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081300 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MVKLQCFTEPLDFGNLLALLDIEGVDGKEVLKKYAGPAKLVVILLFSLYVFWCLVDGTVV 60
          MVKLQCFTEPLDFGNLLALLDIEGVDGKEVLKKYAGPAKLVVILLFSLYVFWCLVDGTVV
Sbjct: 1  MVKLQCFTEPLDFGNLLALLDIEGVDGKEVLKKYAGPAKLVVILLFSLYVFWCLVDGTVV 60

Query: 61 VELSIEASVKKYMKSCGGSGDLEI 85
          VELSIEASVKKYMKSCGGSGDLEI
Sbjct: 61 VELSIEASVKKYMKSCGGSGDLEI 84

The following BLAST results are available for this feature:
BLAST of CsaV3_4G007950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53552.12.9e-39100.00hypothetical protein Csa_4G081300 [Cucumis sativus][more]
BLAST of CsaV3_4G007950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYV6|A0A0A0KYV6_CUCSA1.9e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G007950.1CsaV3_4G007950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G007950Cucumber (Gy14) v2cgybcucB171
CsaV3_4G007950Cucumber (Gy14) v1cgycucB418
CsaV3_4G007950Cucurbita maxima (Rimu)cmacucB0391
CsaV3_4G007950Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G007950Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G007950Cucurbita moschata (Rifu)cmocucB0387
CsaV3_4G007950Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G007950Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G007950Cucurbita pepo (Zucchini)cpecucB0265
CsaV3_4G007950Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G007950Cucurbita pepo (Zucchini)cpecucB0496
CsaV3_4G007950Wild cucumber (PI 183967)cpicucB213
CsaV3_4G007950Bottle gourd (USVL1VR-Ls)cuclsiB323
CsaV3_4G007950Bottle gourd (USVL1VR-Ls)cuclsiB333
CsaV3_4G007950Melon (DHL92) v3.5.1cucmeB306
CsaV3_4G007950Melon (DHL92) v3.5.1cucmeB317
CsaV3_4G007950Melon (DHL92) v3.6.1cucmedB298
CsaV3_4G007950Melon (DHL92) v3.6.1cucmedB309
CsaV3_4G007950Watermelon (Charleston Gray)cucwcgB339
CsaV3_4G007950Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G007950Watermelon (97103) v1cucwmB321
CsaV3_4G007950Watermelon (97103) v1cucwmB323
CsaV3_4G007950Watermelon (97103) v2cucwmbB327
CsaV3_4G007950Watermelon (97103) v2cucwmbB329
CsaV3_4G007950Wax gourdcucwgoB370
CsaV3_4G007950Wax gourdcucwgoB388
CsaV3_4G007950Silver-seed gourdcarcucB0052
CsaV3_4G007950Silver-seed gourdcarcucB0688
CsaV3_4G007950Silver-seed gourdcarcucB0689