CsaV3_4G007820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G007820
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 5463447 .. 5464016 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTGCCCGAAGGATTTAGGGTTCGTCCCACATTTTTTTATTTCGATCTTCGACCTTCGTGGCATTGCTTATTATTGAATTTCTTTCTCTCAATGGTTTTGTGCAGTATGTTCCTTTTGTTTCTTTCTTTCTGGTGATTGTTGTTGGATATTACTTGTAGGGAAGAAAAATTAGGGTTCTGAACATTGTGAATTTGCTTGGATTTTTGTTCTTTTTCTTTATTATGTGCTGAAGCTTATTTTCTCTCTCTTTCTTAGGGCTGGATTTTTTTCGGTTGAGCTTTCAAGCCTGGAAAATGTCTATGGTTCTTCAACTGATTGTACTATGCTAAAACAGGTACAGAGCTCTGACCATAATTCTCCAACCTTATAACCTTAGGGATAAATTTGGATAATTGGATTACAAGTTTTTCATTCTTCTTCTTCAATAATAATAATAAGTAAGAATCTGGCTCTCAGATTTTGTTTTTGTTTTGCTTTCACGTTATGCAGGATTGTGAAGATTTCAATTTGCCACGGATATCACGTATTGACACAAAAAAGTATCTGATGGCCAGTGTAATGTAG

mRNA sequence

ATGCTTCTGCCCGAAGGATTTAGGCTTATTTTCTCTCTCTTTCTTAGGGCTGGATTTTTTTCGGTTGAGCTTTCAAGCCTGGAAAATGTCTATGGTTCTTCAACTGATTGTACTATGCTAAAACAGGATTGTGAAGATTTCAATTTGCCACGGATATCACGTATTGACACAAAAAAGTATCTGATGGCCAGTGTAATGTAG

Coding sequence (CDS)

ATGCTTCTGCCCGAAGGATTTAGGCTTATTTTCTCTCTCTTTCTTAGGGCTGGATTTTTTTCGGTTGAGCTTTCAAGCCTGGAAAATGTCTATGGTTCTTCAACTGATTGTACTATGCTAAAACAGGATTGTGAAGATTTCAATTTGCCACGGATATCACGTATTGACACAAAAAAGTATCTGATGGCCAGTGTAATGTAG

Protein sequence

MLLPEGFRLIFSLFLRAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM
Homology
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BLAST of CsaV3_4G007820 vs. NCBI nr
Match: KGN53543.1 (hypothetical protein Csa_4G075240 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 16  RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM 67
           RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM
Sbjct: 107 RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM 157

[Close]
BLAST of CsaV3_4G007820 vs. TrEMBL
Match: tr|A0A0A0KVH8|A0A0A0KVH8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075240 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 16  RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM 67
           RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM
Sbjct: 107 RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM 157

The following BLAST results are available for this feature:
BLAST of CsaV3_4G007820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53543.14.1e-20100.00hypothetical protein Csa_4G075240 [Cucumis sativus][more]
BLAST of CsaV3_4G007820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVH8|A0A0A0KVH8_CUCSA2.7e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075240 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G007820.1CsaV3_4G007820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G007820CSPI04G07610Wild cucumber (PI 183967)cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G007820Silver-seed gourdcarcucB0052
CsaV3_4G007820Silver-seed gourdcarcucB0688
CsaV3_4G007820Silver-seed gourdcarcucB0689
CsaV3_4G007820Cucumber (Gy14) v2cgybcucB171
CsaV3_4G007820Cucurbita maxima (Rimu)cmacucB0391
CsaV3_4G007820Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G007820Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G007820Cucurbita moschata (Rifu)cmocucB0387
CsaV3_4G007820Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G007820Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G007820Cucurbita pepo (Zucchini)cpecucB0265
CsaV3_4G007820Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G007820Cucurbita pepo (Zucchini)cpecucB0496
CsaV3_4G007820Bottle gourd (USVL1VR-Ls)cuclsiB323
CsaV3_4G007820Bottle gourd (USVL1VR-Ls)cuclsiB333
CsaV3_4G007820Melon (DHL92) v3.5.1cucmeB306
CsaV3_4G007820Melon (DHL92) v3.5.1cucmeB317
CsaV3_4G007820Melon (DHL92) v3.6.1cucmedB298
CsaV3_4G007820Melon (DHL92) v3.6.1cucmedB309
CsaV3_4G007820Watermelon (Charleston Gray)cucwcgB339
CsaV3_4G007820Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G007820Watermelon (97103) v1cucwmB321
CsaV3_4G007820Watermelon (97103) v1cucwmB323
CsaV3_4G007820Watermelon (97103) v2cucwmbB327
CsaV3_4G007820Watermelon (97103) v2cucwmbB329
CsaV3_4G007820Wax gourdcucwgoB370
CsaV3_4G007820Wax gourdcucwgoB388