CsaV3_4G007500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G007500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 5111659 .. 5111986 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATGAAGATGAGAAGACGAGTAAGGAAATGGTTGGAATTGGTATTAAGGTTCAGACCAAGTTTTCCCAACCAGCTCATGCGCTTCAATTTCCAAACTCCTGAAGCCACAGTCAGGTTAGTATTCCCGTCCGATCGACCGGAATTCCTATGATGGACTGCAGCTTCAAGTGTATCGAAGAAGAATTATGATCGGAGAAGGAAGATCGTCGGAAAACCAAAGGGATATTCTGAGTTAAAAAGGAAATTTCAAGAAAGAGAAGGAGAAACGAGAAAGGAAATCAGTTTGAGATTCCCAAATCCCACTTTCACCCCTTATTTATAG

mRNA sequence

ATGGAGGATGAAGATGAGAAGACGAGTAAGGAAATGGTTGGAATTGCTTCAAGTGTATCGAAGAAGAATTATGATCGGAGAAGGAAGATCGTCGGAAAACCAAAGGGATATTCTGAGTTAAAAAGGAAATTTCAAGAAAGAGAAGGAGAAACGAGAAAGGAAATCAGTTTGAGATTCCCAAATCCCACTTTCACCCCTTATTTATAG

Coding sequence (CDS)

ATGGAGGATGAAGATGAGAAGACGAGTAAGGAAATGGTTGGAATTGCTTCAAGTGTATCGAAGAAGAATTATGATCGGAGAAGGAAGATCGTCGGAAAACCAAAGGGATATTCTGAGTTAAAAAGGAAATTTCAAGAAAGAGAAGGAGAAACGAGAAAGGAAATCAGTTTGAGATTCCCAAATCCCACTTTCACCCCTTATTTATAG

Protein sequence

MEDEDEKTSKEMVGIASSVSKKNYDRRRKIVGKPKGYSELKRKFQEREGETRKEISLRFPNPTFTPYL
Homology
[Close]
BLAST of CsaV3_4G007500 vs. NCBI nr
Match: KGN53508.1 (hypothetical protein Csa_4G062930 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MEDEDEKTSKEMVGIASSVSKKNYDRRRKIVGKPKGYSELKRKFQEREGETRKEISLRFP 60
          MEDEDEKTSKEMVGIASSVSKKNYDRRRKIVGKPKGYSELKRKFQEREGETRKEISLRFP
Sbjct: 1  MEDEDEKTSKEMVGIASSVSKKNYDRRRKIVGKPKGYSELKRKFQEREGETRKEISLRFP 60

Query: 61 NPTFTPYL 69
          NPTFTPYL
Sbjct: 61 NPTFTPYL 68

[Close]
BLAST of CsaV3_4G007500 vs. TrEMBL
Match: tr|A0A0A0KVF3|A0A0A0KVF3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G062930 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MEDEDEKTSKEMVGIASSVSKKNYDRRRKIVGKPKGYSELKRKFQEREGETRKEISLRFP 60
          MEDEDEKTSKEMVGIASSVSKKNYDRRRKIVGKPKGYSELKRKFQEREGETRKEISLRFP
Sbjct: 1  MEDEDEKTSKEMVGIASSVSKKNYDRRRKIVGKPKGYSELKRKFQEREGETRKEISLRFP 60

Query: 61 NPTFTPYL 69
          NPTFTPYL
Sbjct: 61 NPTFTPYL 68

The following BLAST results are available for this feature:
BLAST of CsaV3_4G007500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53508.11.9e-28100.00hypothetical protein Csa_4G062930 [Cucumis sativus][more]
BLAST of CsaV3_4G007500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVF3|A0A0A0KVF3_CUCSA1.3e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G062930 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G007500.1CsaV3_4G007500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..68

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G007500Cucumber (Chinese Long) v3cuccucB166
CsaV3_4G007500Silver-seed gourdcarcucB0052
CsaV3_4G007500Silver-seed gourdcarcucB0689
CsaV3_4G007500Cucumber (Gy14) v2cgybcucB171
CsaV3_4G007500Cucumber (Gy14) v2cgybcucB176
CsaV3_4G007500Cucumber (Gy14) v1cgycucB289
CsaV3_4G007500Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G007500Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G007500Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G007500Cucurbita moschata (Rifu)cmocucB0560
CsaV3_4G007500Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G007500Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G007500Cucurbita pepo (Zucchini)cpecucB0496
CsaV3_4G007500Wild cucumber (PI 183967)cpicucB213
CsaV3_4G007500Wild cucumber (PI 183967)cpicucB226
CsaV3_4G007500Bottle gourd (USVL1VR-Ls)cuclsiB317
CsaV3_4G007500Bottle gourd (USVL1VR-Ls)cuclsiB323
CsaV3_4G007500Melon (DHL92) v3.5.1cucmeB317
CsaV3_4G007500Melon (DHL92) v3.6.1cucmedB309
CsaV3_4G007500Watermelon (Charleston Gray)cucwcgB295
CsaV3_4G007500Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G007500Watermelon (97103) v1cucwmB323
CsaV3_4G007500Watermelon (97103) v2cucwmbB329
CsaV3_4G007500Wax gourdcucwgoB370